clone | seq. | 5'-sequence | 3'-sequence | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
JMFF016O21 | Sequence | 612 | 000778 (22) | ref|XP_009625859.1| | 4e-34 | PREDICTED: 50S ribosomal protein L1, chloroplastic [Nicotiana tomentosiformis] | 760 | 000778 (22) | ref|XP_009625859.1| | 4e-83 | PREDICTED: 50S ribosomal protein L1, chloroplastic [Nicotiana tomentosiformis] |
JMFF021I13 | Sequence | 519 | 000778 (22) | ref|XP_009625859.1| | 8e-26 | PREDICTED: 50S ribosomal protein L1, chloroplastic [Nicotiana tomentosiformis] | 705 | 000778 (22) | emb|CBI24963.3| | 2e-94 | unnamed protein product [Vitis vinifera] |
JMFF028J02 | Sequence | 540 | 000778 (22) | ref|XP_009625859.1| | 1e-22 | PREDICTED: 50S ribosomal protein L1, chloroplastic [Nicotiana tomentosiformis] | 609 | 000778 (22) | emb|CBI24963.3| | 5e-56 | unnamed protein product [Vitis vinifera] |
JMFN037O02 | Sequence | 574 | 000778 (22) | emb|CDP17822.1| | 4e-77 | unnamed protein product [Coffea canephora] | |||||
JMSF006G09 | Sequence | 419 | 008655 (4) | ref|XP_009611208.1| | 6e-51 | PREDICTED: non-structural maintenance of chromosomes element 4 homolog A-like i | |||||
JMSF006G11 | Sequence | 266 | 000778 (22) | 489 | 008655 (4) | ref|XP_006362231.1| | 3e-47 | PREDICTED: non-structural maintenance of chromosomes element 4 homolog A-like [ | |||
JMSF012G19 | Sequence | 246 | 000778 (22) | 775 | 000778 (22) | emb|CBI24963.3| | 1e-124 | unnamed protein product [Vitis vinifera] | |||
JMSF019E17 | Sequence | 545 | 000778 (22) | ref|XP_009625859.1| | 2e-32 | PREDICTED: 50S ribosomal protein L1, chloroplastic [Nicotiana tomentosiformis] | 763 | 000778 (22) | emb|CDP17822.1| | 1e-118 | unnamed protein product [Coffea canephora] |
JMSF025M05 | Sequence | 660 | 000778 (22) | ref|XP_009625859.1| | 2e-60 | PREDICTED: 50S ribosomal protein L1, chloroplastic [Nicotiana tomentosiformis] | 783 | 000778 (22) | emb|CDP17822.1| | 2e-120 | unnamed protein product [Coffea canephora] |
JMSF026K06 | Sequence | 651 | 000778 (22) | ref|XP_009625859.1| | 1e-40 | PREDICTED: 50S ribosomal protein L1, chloroplastic [Nicotiana tomentosiformis] | 714 | 000778 (22) | emb|CBI24963.3| | 3e-107 | unnamed protein product [Vitis vinifera] |
JMSF032B12 | Sequence | 672 | 000778 (22) | ref|XP_009625859.1| | 3e-63 | PREDICTED: 50S ribosomal protein L1, chloroplastic [Nicotiana tomentosiformis] | 755 | 000778 (22) | emb|CDP17822.1| | 4e-114 | unnamed protein product [Coffea canephora] |
JMSF037P18 | Sequence | 652 | 000778 (22) | ref|XP_009625859.1| | 2e-48 | PREDICTED: 50S ribosomal protein L1, chloroplastic [Nicotiana tomentosiformis] | 731 | 000778 (22) | emb|CBI24963.3| | 1e-96 | unnamed protein product [Vitis vinifera] |
JMSF041L13 | Sequence | 750 | 000778 (22) | ref|XP_009625859.1| | 3e-83 | PREDICTED: 50S ribosomal protein L1, chloroplastic [Nicotiana tomentosiformis] | 748 | 000778 (22) | emb|CBI24963.3| | 6e-85 | unnamed protein product [Vitis vinifera] |
JMSF047H18 | Sequence | 655 | 008655 (4) | ref|XP_009611208.1| | 1e-75 | PREDICTED: non-structural maintenance of chromosomes element 4 homolog A-like i | 756 | 008655 (4) | ref|XP_004249168.1| | 2e-80 | PREDICTED: non-structural maintenance of chromosomes element 4 homolog A [Solan |
Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.
SCORE============================================Contig000778============================================1448 31 ------------------------------------>JMFF028J02 <-----------------------------------------rJMFF028J02 42 ----------------------------------------->JMFF016O21 <----------------------------------------------------rJMFF016O21 101 -------------------------------------------->JMSF026K06 <------------------------------------------------rJMSF026K06 142 --------------------------------------------------->JMSF041L13 <--------------------------------------------------rJMSF041L13 154 --------------------------------------------->JMSF032B12 <---------------------------------------------------rJMSF032B12 158 ----------------------------------->JMFF021I13 <------------------------------------------------rJMFF021I13 159 --------------------------------------------->JMSF025M05 <-----------------------------------------------------rJMSF025M05 162 ------------------------------------->JMSF019E17 <----------------------------------------------------rJMSF019E17 207 ----------------------------------------->JMSF037P18 <-------------------------------------------rJMSF037P18 212 ---------------->JMSF012G19 <-----------------------------------------------------rJMSF012G19
The following clones don't have the opposite end in this pair.
----------------->JMSF006G11* ------------------------->JMFN037O02-