Contig 008655:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF006G09-                                GAAACGGTGTAGCAGAGAGTAGCAACGGTAACAGTAACA
JMSF047H18-                                GAAACGGTGTAGCAGAGAGTAGCAACGGTAACAGTAACA
                      ____________________________________________________________
consensus                                  GAAACGGTGTAGCAGAGAGTAGCAACGGTAACAGTAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF006G09-           ATGACAGTTCCAGTGAAGAAGACGTTCTCGACCGCAGATTTCTTCGATCTCGATACCTCA
JMSF047H18-           ATGACAGTTCCAGTGAAGAAGACGTTCTCGACCGCAGATTTCTTCGATCTCGATACCTCA
                      ____________________________________________________________
consensus             ATGACAGTTCCAGTGAAGAAGACGTTCTCGACCGCAGATTTCTTCGATCTCGATACCTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF006G09-           ACGTTAAGTCTCGGATTTGTGATGAAAAGGATGATCTGTCCAAGGCTGATTCAGATAAGT
JMSF047H18-           ACGTTAAGTCTCGGATTTGTGATGAAAAGGATGATCTGTCCAAGGCTGATTCAGATAAGT
                      ____________________________________________________________
consensus             ACGTTAAGTCTCGGATTTGTGATGAAAAGGATGATCTGTCCAAGGCTGATTCAGATAAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF006G09-           TTACATCAATATTTGAAGAAGTTGAAAGGCTGCATGAGAAAGTTCAAAACCCCCGAGAAC
JMSF047H18-           TTACATCAATATTTGAAGAAGTTGAAAGGCTGCATGAGAAAGTTCAAAACCCCCGAGAAC
                      ____________________________________________________________
consensus             TTACATCAATATTTGAAGAAGTTGAAAGGCTGCATGAGAAAGTTCAAAACCCCCGAGAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF006G09-           AAGTTGCAGATGCAGAAGCCTTGTTGGACATCACAAACACTTTGGTGACTTCTGTTAAGG
JMSF047H18-           AAGTTGCAGATGCAGAAGCCTTGTTGGACATCACAAACACTTTGGTGACTTCTGTTAAGG
                      ____________________________________________________________
consensus             AAGTTGCAGATGCAGAAGCCTTGTTGGACATCACAAACACTTTGGTGACTTCTGTTAAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF006G09-           CGCATAGCAATGAAGGAGTGACTCCTACAGATTTTCTTAGTTGTTTGCTTAGAGAGTTTG
JMSF047H18-           CGCATAGCAATGAAGGAGTGACTCCTACAGATTTTCTTAGTTGTTTGCTTAGAGAGTTTG
                      ____________________________________________________________
consensus             CGCATAGCAATGAAGGAGTGACTCCTACAGATTTTCTTAGTTGTTTGCTTAGAGAGTTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF006G09-           GTGATCAAGTAGGCATTAGTTCCAGCACAGATGCGAGTCAGAATTCTATTTGCTGGGAGG
JMSF047H18-           GTGATCAAGTAGGCATTAGTTCCAGCACAGATGCGAGTCAGAATTCTATTTGCTGGGAGG
                      ____________________________________________________________
consensus             GTGATCAAGTAGGCATTAGTTCCAGCACAGATGCGAGTCAGAATTCTATTTGCTGGGAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF006G09-           AGGTTGGGTTTGCTGTCTCC                                        
JMSF047H18-           AGGTTGGGTTTGCTGTCTCCAATGTTTTCAAGAGTGCTCCTGGATGTTGCACAATGACCG
                      ____________________________________________________________
consensus             AGGTTGGGTTTGCTGTCTCCAATGTTTTCAAGAGTGCTCCTGGATGTTGCACAATGACCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047H18-           GGCCTATGACTTGTGAAGTTAAGCCACGGAAGCCTGTGGTGCAGAGAAAGCGTGTAAGGC
rJMSF047H18+                                  CACGGAAGCCTGTGGTGCAGAGAAAGCGTGTAAGGC
                      ____________________________________________________________
consensus             GGCCTATGACTTGTGAAGTTAAGCCACGGAAGCCTGTGGTGCAGAGAAAGCGTGTAAGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047H18-           CAACAGGAAATGAACGTCCAGAAGAGCTTCCAGAAAGTGAAGCTGAAAAGAACACAGACA
rJMSF047H18+          CANCAGGAAATGAACGTCCAGAAGAGCTTCCAGAAAGTGAAGCTGAAAAGAACACAGACA
                      ____________________________________________________________
consensus             CAACAGGAAATGAACGTCCAGAAGAGCTTCCAGAAAGTGAAGCTGAAAAGAACACAGACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047H18-           CAGACCAAAATATGGCAACAATGTTCCAAATCTTAAGGAAGCACCGGAGGGTCAGACTTG
rJMSF047H18+          CAGACAAAAATATGGCAACAATGTTCCAAATCTTAAGGAAGCACCGGAGGGTCAGACTTG
                      ____________________________________________________________
consensus             CAGACCAAAATATGGCAACAATGTTCCAAATCTTAAGGAAGCACCGGAGGGTCAGACTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047H18-           AAGCTTTGCTGCTGAA                                            
rJMSF047H18+          AAGCTTTGCTGCTGAATAGAAGATCATTTGCACAAACAGTTGAGAATCTATTTGCTCTAT
                      ____________________________________________________________
consensus             AAGCTTTGCTGCTGAATAGAAGATCATTTGCACAAACAGTTGAGAATCTATTTGCTCTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF006G11+               CTAGCCAAAGATGGTAGGGCTCAAATAACTGTTGATGATAAGGGCGNTCACACAG
rJMSF047H18+          CTTTTCTAGCCAAAGATGGTAGGGCTCAAATAACTGTTGATGATAAGGGCGTTCACACAG
                      ____________________________________________________________
consensus             CTTTTCTAGCCAAAGATGGTAGGGCTCAAATAACTGTTGATGATAAGGGCGTTCACACAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF006G11+          NGGGACCAAGGAACGCCCCTTCTGCCAATGCAGTTCTTTCTGGAGAAGTTTCTTACAAAC
rJMSF047H18+          TGGGACCAAGGAACGCCCCTTCTGCCAATGCAGTTCTTTCTGGAGAAGTTTCTTACAAAC
                      ____________________________________________________________
consensus             TGGGACCAAGGAACGCCCCTTCTGCCAATGCAGTTCTTTCTGGAGAAGTTTCTTACAAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF006G11+          ATTTTGNTTTCAGATTTNACTTTAANGATTGGAAGCTAATGTTGGCATCTGTTGAGGTTG
rJMSF047H18+          ATTTTGTTTTCAGATTTGACTTTAATGATTGGAAGCTAATGTTGGCATCTGTTGAGGTTG
                      ____________________________________________________________
consensus             ATTTTGTTTTCAGATTTGACTTTAATGATTGGAAGCTAATGTTGGCATCTGTTGAGGTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF006G11+          GGGAGGAATTAATGCCTCACAGAAATGAAGATGTCCCGGATACTTTTCANCCAGCANTGA
rJMSF047H18+          GGGAGGAATTAATGCCTCACAGAAATGAAGATGTCCCGGATAATTTTCAACCAGCATTGA
                      ____________________________________________________________
consensus             GGGAGGAATTAATGCCTCACAGAAATGAAGATGTCCCGGATACTTTTCAACCAGCATTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF006G11+          CTAATGAAGAAACAACAGAAAGAGGTCCTTCAACCCCAATAAGGAAGTTCTCCAGGAACC
rJMSF047H18+          CTAATGAAGAAACAACAGAAAGAGGTCCTTCAACCCCAATAAGGAAGTTGTCCAGGAACC
                      ____________________________________________________________
consensus             CTAATGAAGAAACAACAGAAAGAGGTCCTTCAACCCCAATAAGGAAGTTGTCCAGGAACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF006G11+          GAGGCCTGGTTTTGCAGGAGCAGACAGTTGTGGNAGATTCACCCGAAGCTGANGATTCAG
rJMSF047H18+          GAGGCCTGGTTTTGCAGGAGCAGACAGTTGTGGAAGATTCACCCGAAGGTGATGATTCAG
                      ____________________________________________________________
consensus             GAGGCCTGGTTTTGCAGGAGCAGACAGTTGTGGAAGATTCACCCGAAGGTGATGATTCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF006G11+          GAGCAAGAGCGGCTGCGATTCGTANGGGGAAGCGGAAACTAGGAATCTGATTCTTCCATA
rJMSF047H18+          GAGCAAGAGCGGCTGCGATTCGTAAGGGGAAGCGGAAACTAGGAATCTGATTCTTCCATA
                      ____________________________________________________________
consensus             GAGCAAGAGCGGCTGCGATTCGTAAGGGGAAGCGGAAACTAGGAATCTGATTCTTCCATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF006G11+          GAATGTGATTTCGGAATTCCAAGGAAAACTAACTTCGTTGTGA                 
rJMSF047H18+          GAATGTGATTTAGGAATTCCAAGGAAAACTAACTTCGTTGTGATTTGTATATCCTTTTAG
                      ____________________________________________________________
consensus             GAATGTGATTTCGGAATTCCAAGGAAAACTAACTTCGTTGTGATTTGTATATCCTTTTAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047H18+          AATTTCTAAGGAAGGTGTAATGTTTTTTGGTACATCATAGATGTTACTTTCTTGGTAATA
                      ____________________________________________________________
consensus             AATTTCTAAGGAAGGTGTAATGTTTTTTGGTACATCATAGATGTTACTTTCTTGGTAATA