| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF016O21 | Sequence | 612 | 000778 (22) | ref|XP_009625859.1| | 4e-34 | PREDICTED: 50S ribosomal protein L1, chloroplastic [Nicotiana tomentosiformis] | 760 | 000778 (22) | ref|XP_009625859.1| | 4e-83 | PREDICTED: 50S ribosomal protein L1, chloroplastic [Nicotiana tomentosiformis] |
| JMFF021I13 | Sequence | 519 | 000778 (22) | ref|XP_009625859.1| | 8e-26 | PREDICTED: 50S ribosomal protein L1, chloroplastic [Nicotiana tomentosiformis] | 705 | 000778 (22) | emb|CBI24963.3| | 2e-94 | unnamed protein product [Vitis vinifera] |
| JMFF028J02 | Sequence | 540 | 000778 (22) | ref|XP_009625859.1| | 1e-22 | PREDICTED: 50S ribosomal protein L1, chloroplastic [Nicotiana tomentosiformis] | 609 | 000778 (22) | emb|CBI24963.3| | 5e-56 | unnamed protein product [Vitis vinifera] |
| JMFN037O02 | Sequence | 574 | 000778 (22) | emb|CDP17822.1| | 4e-77 | unnamed protein product [Coffea canephora] | |||||
| JMSF006G11 | Sequence | 266 | 000778 (22) | 489 | 008655 (4) | ref|XP_006362231.1| | 3e-47 | PREDICTED: non-structural maintenance of chromosomes element 4 homolog A-like [ | |||
| JMSF012G19 | Sequence | 246 | 000778 (22) | 775 | 000778 (22) | emb|CBI24963.3| | 1e-124 | unnamed protein product [Vitis vinifera] | |||
| JMSF019E17 | Sequence | 545 | 000778 (22) | ref|XP_009625859.1| | 2e-32 | PREDICTED: 50S ribosomal protein L1, chloroplastic [Nicotiana tomentosiformis] | 763 | 000778 (22) | emb|CDP17822.1| | 1e-118 | unnamed protein product [Coffea canephora] |
| JMSF025M05 | Sequence | 660 | 000778 (22) | ref|XP_009625859.1| | 2e-60 | PREDICTED: 50S ribosomal protein L1, chloroplastic [Nicotiana tomentosiformis] | 783 | 000778 (22) | emb|CDP17822.1| | 2e-120 | unnamed protein product [Coffea canephora] |
| JMSF026K06 | Sequence | 651 | 000778 (22) | ref|XP_009625859.1| | 1e-40 | PREDICTED: 50S ribosomal protein L1, chloroplastic [Nicotiana tomentosiformis] | 714 | 000778 (22) | emb|CBI24963.3| | 3e-107 | unnamed protein product [Vitis vinifera] |
| JMSF032B12 | Sequence | 672 | 000778 (22) | ref|XP_009625859.1| | 3e-63 | PREDICTED: 50S ribosomal protein L1, chloroplastic [Nicotiana tomentosiformis] | 755 | 000778 (22) | emb|CDP17822.1| | 4e-114 | unnamed protein product [Coffea canephora] |
| JMSF037P18 | Sequence | 652 | 000778 (22) | ref|XP_009625859.1| | 2e-48 | PREDICTED: 50S ribosomal protein L1, chloroplastic [Nicotiana tomentosiformis] | 731 | 000778 (22) | emb|CBI24963.3| | 1e-96 | unnamed protein product [Vitis vinifera] |
| JMSF041L13 | Sequence | 750 | 000778 (22) | ref|XP_009625859.1| | 3e-83 | PREDICTED: 50S ribosomal protein L1, chloroplastic [Nicotiana tomentosiformis] | 748 | 000778 (22) | emb|CBI24963.3| | 6e-85 | unnamed protein product [Vitis vinifera] |
This contig is upended
. : . : . : . : . : . :
rJMFF028J02- ATGGACAG
____________________________________________________________
consensus ATGGACAG
. : . : . : . : . : . :
rJMFF028J02- AAATCAGAATAAAGAACATATGGATGGATACATCCCAATTTCATGGAAAGAAAAGTTGCC
rJMFF016O21- TGGATGGATACATCCCAATTTCATGGAAAGAAAAGTTGCC
____________________________________________________________
consensus AAATCAGAATAAAGAACATATGGATGGATACATCCCAATTTCATGGAAAGAAAAGTTGCC
. : . : . : . : . : . :
rJMFF028J02- TTTAACTGAAACTAGAAAGGTTATGGTAAGTTAAATTTGATGACATTAAACACAGCAGAC
rJMFF016O21- TTTAACTGAAACTAGAAAGGTTATGGTAAGTTAAATTTGATGACATTAAACACAGCAGAC
rJMSF041L13- ACTGAAACTAGAAAGGTTATGGTAAGTTAAATTTGATGACATTAAACACAGCAGAC
rJMSF026K06- AATTTGATGACATTAAACACAGCAGAC
rJMFF021I13- TATGGTAAGTTAAATTTGATGACATTAAACACAGCAGAC
rJMSF032B12- AGGTTATGGTAAGTTAAATTTGATGACATTAAACACAGCAGAC
rJMSF019E17- GTAAGTTAAATTTGATGACATTAAACACAGCAGAC
rJMSF025M05- TTATGGTAAGTTAAATTTGATGACATTAAACACAGCAGAC
____________________________________________________________
consensus TTTAACTGAAACTAGAAAGGTTATGGTAAGTTAAATTTGATGACATTAAACACAGCAGAC
. : . : . : . : . : . :
rJMFF028J02- ATACAAGGAAGGGCAAAAAACCCAAGCTTCTGGAAACAAAAGGGAACTTAGAAATTCCTT
rJMFF016O21- ATACAAGGAAGGGCAAAAAACCCAAGCTTCTGGAAACAAAAGGGAACTTAGAAATTCCTT
rJMSF041L13- ATACAAGGAAGGGCAAAAAACCCAAGCTTCTGGAAACAAAAGGGAACTTAGAAATTCCTT
rJMSF026K06- ATACAAGGAAGGGCAAAAAACCCAAGCTTCTGGAAACAAAAGGGAACTTAGAAATTCCTT
rJMFF021I13- ATACAAGGAAGGGCAAAAAACCCAAGCTTCTGGAAACAAAAGGGAACTTAGAAATTCCTT
rJMSF037P18- GGGCAAAAAACCCAAGCTTCTGGAAACAAAAGGGAACTTAGAAATTCCTT
rJMSF032B12- ATACAAGGAAGGGCAAAAAACCCAAGCTTCTGGAAACAAAAGGGAACTTAGAAATTCCTT
rJMSF019E17- ATACAAGGAAGGGCAAAAAACCCAAGCTTCTGGAAACAAAAGGGAACTTAGAAATTCCTT
rJMSF025M05- ATACAAGGAAGGGCAAAAAACCCAAGCTTCTGGAAACAAAAGGGAACTTAGAAATTCCTT
rJMSF012G19- AAAAACCCAAGCTTCTGGAAACAAAAGGGAACTTAGAAATTCCTT
____________________________________________________________
consensus ATACAAGGAAGGGCAAAAAACCCAAGCTTCTGGAAACAAAAGGGAACTTAGAAATTCCTT
. : . : . : . : . : . :
rJMFF028J02- CCTTTCCCTCCTCATATTGCACCCTCTTTGCCAAGTAAGAAGCTCATATAGGCGCCCAAC
rJMFF016O21- CCTTTCCCTCCTCATATTGCACCCTCTTTGCCAAGTAAGAAGCTCATATAGGCGCCCAAC
rJMSF041L13- CCTTTCCCTCCTCATATTGCACCCTCTTTGCCAAGTAAGAAGCTCATATAGGCGCCCAAC
rJMSF026K06- CCTTTCCCTCCTCATATTGCACCCTCTTTGCCAAGTAAGAAGCTCATATAGGCGCCCAAC
rJMFF021I13- CCTTTCCCTCCTCATATTGCACCCTCTTTGCCAAGTAAGAAGCTCATATAGGCGCCCAAC
rJMSF037P18- CCTTTCCCTCCTCATATTGCACCCTCTTTGCCAAGTAAGAAGCTCATATAGGCGCCCAAC
rJMSF032B12- CCTTTCCCTCCTCATATTGCACCCTCTTTGCCAAGTAAGAAGCTCATATAGGCGCCCAAC
rJMSF019E17- CCTTTCCCTCCTCATATTGCACCCTCTTTGCCAAGTAAGAAGCTCATATAGGCGCCCAAC
rJMSF025M05- CCTTTCCCTCCTCATATTGCACCCTCTTTGCCAAGTAAGAAGCTCATATAGGCGCCCAAC
rJMSF012G19- CCTTTCCCTCCTCATATTGCACCCTCTTTGCCAAGTAAGAAGCTCATATAGGCGCCCAAC
____________________________________________________________
consensus CCTTTCCCTCCTCATATTGCACCCTCTTTGCCAAGTAAGAAGCTCATATAGGCGCCCAAC
. : . : . : . : . : . :
rJMFF028J02- AGAGCGTTTCCNATGGCNCAAGATACAATTTACACGTGATTGTTAACTAAGCAGTTGTCG
rJMFF016O21- AGAGCGTTTCCAATGGCACAAGATACAATTTACACGTGATTGTTAACTAAGCAGTTGTCG
rJMSF041L13- AGAGCGTTTCCAATGGCACAAGATACAATTTACACGTGATTGTTAACTAAGCAGTTGTCG
rJMSF026K06- AGAGCGTTTCCAATGGCACAAGATACAATTTACACGTGATTGTTAACTAAGCAGTTGTCG
rJMFF021I13- AGAGCGTTTCCAATGGCACAAGATACAATTTACACGTGATTGTTAACTAAGCAGTTGTCG
rJMSF037P18- AGAGCGTTTCCAATGGCACAAGATACAATTTACACGTGATTGTTAACTAAGCAGTTGTCG
rJMSF032B12- AGAGCGTTTCCAATGGCACAAGATACAATTTACACGTGATTGTTAACTAAGCAGTTGTCG
rJMSF019E17- AGAGCGTTTCCAATGGCACAAGATACAATTTACACGTGATTGTTAACTAAGCAGTTGTCG
rJMSF025M05- AGAGCGTTTCCAATGGCACAAGATACAATTTACACGTGATTGTTAACTAAGCAGTTGTCG
rJMSF012G19- AGAGCGTTTCCAATGGCACAAGATACAATTTACACGTGATTGTTAACTAAGCAGTTGTCG
____________________________________________________________
consensus AGAGCGTTTCCAATGGCACAAGATACAATTTACACGTGATTGTTAACTAAGCAGTTGTCG
. : . : . : . : . : . :
rJMFF028J02- AACTCTTGAAATCGAGCATCTCCCTTACATTTAACCGAATGGAAGGCCCCATTGATGAAC
rJMFF016O21- AACTCTTGAAATCGAGCATCTCCCTTACATTTAACCGAATGGAAGGCCCCATTGATGAAC
rJMSF041L13- AACTCTTGAAATCGAGCATCTCCCTTACATTTAACCGAATGGAAGGCCCCATTGATGAAC
rJMSF026K06- AACTCTTGAAATCGAGCATCTCCCTTACATTTAACCGAATGGAAGGCCCCATTGATGAAC
rJMFF021I13- AACTCTTGAAATCGAGCATCTCCCTTACATTTAACCGAATGGAAGGNCCCATTGATGAAC
rJMSF037P18- AACTCTTGAAATCGAGCATCTCCCTTACATTTAACCGAATGGAAGGCCCCATTGATGAAC
rJMSF032B12- AACTCTTGAAATCGAGCATCTCCCTTACATTTAACCGAATGGAAGGCCCCATTGATGAAC
rJMSF019E17- AACTCTTGAAATCGAGCATCTCCCTTACATTTAACCGAATGGAAGGCCCCATTGATGAAC
rJMSF025M05- AACTCTTGAAATCGAGCATCTCCCTTACATTTAACCGAATGGAAGGCCCCATTGATGAAC
JMFN037O02+ CTTGAAATCCAGCATCTCCCTTACGTTTAATCAAATCGAAGGACCCATGGATGAAC
rJMSF012G19- AACTCTTGAAATCGAGCATCTCCCTTACATTTAACCGAATGGAAGGCCCCATTGATGAAC
____________________________________________________________
consensus AACTCTTGAAATCGAGCATCTCCCTTACATTTAACCGAATGGAAGGCCCCATTGATGAAC
. : . : . : . : . : . :
rJMFF028J02- ACACGTGAGCGGTTTTCCAGTACACTCCTTTTGCGCCGGATGGCTTGTTTGTTTCCACTG
rJMFF016O21- ACACGTGAG--GTTTTCCAGTACACTCCTTTTGCGCCGGATGGCTTGTTTGTTTCCACTG
rJMSF041L13- ACACGTGAGCGGTTTTCCAGTACACTCCTTTTGCGCCGGATGGCTTGTTTGTTTCCACTG
rJMSF026K06- ACACGTGAGCGGTTTTCCAGTACACTCCTTTTGCGCCGGATGGCTTGTTTGTTTCCACTG
rJMFF021I13- ACACGTGAGCGGTTTTCCAGTACACTCCTTTTGCGCCGGATGGCTTGTTTGTTTCCACTG
rJMSF037P18- ACACGTGAGCGGTTTTCCAGTACACTCCTTTTGCGCCGGATGGCTTGTTTGTTTCCACTG
rJMSF032B12- ACACGTGAGCGGTTTTCCAGTACACTCCTTTTGCGCCGGATGGCTTGTTTGTTTCCACTG
rJMSF019E17- ACACGTGAGCGGTTTTCCAGTACACTCCTTTTGCGCCGGATGGCTTGTTTGTTTCCACTG
rJMSF025M05- ACACGTGAGCGGTTTTCCAGTACACTCCTTTTGCGCCGGATGGCTTGTTTGTTTCCACTG
JMFN037O02+ ACACATGGGCACTTTTCCAGTACAACACTTTCGCGCCCAATGGCTTGTTTGATTCTACTG
rJMSF012G19- ACACGTGAGCGGTTTTCCAGTACACTCCTTTTGCGCCGGATGGCTTGTTTGTTTCCACTG
____________________________________________________________
consensus ACACGTGAGCGGTTTTCCAGTACACTCCTTTTGCGCCGGATGGCTTGTTTGTTTCCACTG
. : . : . : . : . : . :
rJMFF028J02- ATTTCACAACTGCGAGGAAGTTTTCAAGAAGATCTTCATCTGAGAAACCTATTTTCCCAA
rJMFF016O21- ATTTCACAACTGCGAGGAAGTTTTCAAGAAGATCTTCATCTGAGAAACCTATTTTCCCAA
rJMSF041L13- ATTTCACAACTGCGAGGAAGTTTTCAAGAAGATCTTCATCTGAGAAACCTATTTTCCCAA
rJMSF026K06- ATTTCACAACTGCGAGGAAGTTTTCAAGAAGATCTTCATCTGAGAAACCTATTTTCCCAA
rJMFF021I13- ATTTCACAACTGCGAGGAAGTTTTCAAGAAGATCTTCATCTGAGAAACCTATTTTCCCAA
rJMSF037P18- ATTTCACAACTGCGAGGAAGTTTTCAAGAAGATCTTCATCTGAGAAACCTATTTTCCCAA
rJMSF032B12- ATTTCACAACTGCGAGGAAGTTTTCAAGAAGATCTTCATCTGAGAAACCTATTTTCCCAA
rJMSF019E17- ATTTCACAACTGCGAGGAAGTTTTCAAGAAGATCTTCATCTGAGAAACCTATTTTCCCAA
rJMSF025M05- ATTTCACAACTGCGAGGAAGTTTTCAAGAAGATCTTCATCTGAGAAACCTATTTTCCCAA
JMFN037O02+ ATTGCACTGCTGCAAGAAAGTTTTCGAGAAGGTCCTCCTCTGAGAACCTGACTTTTCCAA
rJMSF012G19- ATTTCACAACTGCGAGGAAGTTTTCAAGAAGATCTTCATCTGAGAAACCTATTTTCCCAA
____________________________________________________________
consensus ATTTCACAACTGCGAGGAAGTTTTCAAGAAGATCTTCATCTGAGAAACCTATTTTCCCAA
. : . : . : . : . : . :
rJMFF028J02- ATGGTATGTGGACAATCCCGGTTTTATCTGCACGGTATTCAACTTTCCCCTTCTTAAATT
rJMFF016O21- ATGGTATGTGGACAATCCCGGTTTTATCTGCACGGTATTCAACTTTCCCCTTCTTAAATT
rJMSF041L13- ATGGTATGTGGACAATCCCGGTTTTATCTGCACGGTATTCAACTTTCCCCTTCTTAAATT
rJMSF026K06- ATGGTATGTGGACAATCCCGGTTTTATCTGCACGGTATTCAACTTTCCCCTTCTTAAATT
rJMFF021I13- ATGGTATGTGGACAATCCCGGTTTTATCTGCACGGTATTCAACTTTCCCTTTCTTAAATT
rJMSF037P18- ATGGTATGTGGACAATCCCGGTTTTATCTGCACGGTATTCAACTTTCCCCTTCTTAAATT
rJMSF032B12- ATGGTATGTGGACAATCCCGGTTTTATCTGCACGGTATTCAACTTTCCCCTTCTTAAATT
rJMSF019E17- ATGGTATGTGGACAATCCCGGTTTTATCTGCACGGTATTCAACTTTCCCCTTCTTAAATT
rJMSF025M05- ATGGTATGTGGACAATCCCGGTTTTATCTGCACGGTATTCAACTTTCCCCTTCTTAAATT
JMFN037O02+ AAGGCATGTGTACAATCCCGGTTTTATCAGCCCGATATTCAACTTTGCCCTTTTTGAATT
rJMSF012G19- ATGGTATGTGGACAATCCCGGTTTTATCTGCACGGTATTCAACTTTCCCCTTCTTAAATT
____________________________________________________________
consensus ATGGTATGTGGACAATCCCGGTTTTATCTGCACGGTATTCAACTTTCCCCTTCTTAAATT
. : . : . : . : . : . :
rJMFF028J02- CCTGTATGGCCTGAGGTATATTTGTTGTAACTGTACCCGCTTTTGGATTTGGCATGAGTC
rJMFF016O21- CCTGTATGGCCTGAGGTATATTTGTTGTAACTGTACCCGCTTTTGGATTTGGCATGAGTC
rJMSF041L13- CCTGTATGGCCTGAGGTATATTTGTTGTAACTGTACCCGCTTTTGGATTTGGCATGAGTC
rJMSF026K06- CCTGTATGGCCTGAGGTATATTTGTTGTAACTGTACCCGCTTTTGGATTTGGCATGAGTC
rJMFF021I13- CCTGTATGGCCTGAGGTATATTTGTTGTAACTGTACCCGCTTTTGGATTTGGCATGAGTC
rJMSF037P18- CCTGTATGGCCTGAGGTATATTTGTTGTAACTGTACCCGCTTTTGGATTTGGCATGAGTC
rJMSF032B12- CCTGTATGGCCTGAGGTATATTTGTTGTAACTGTACCCGCTTTTGGATTTGGCATGAGTC
rJMSF019E17- CCTGTATGGCCTGAGGTATATTTGTTGTAACTGTACCCGCTTTTGGATTTGGCATGAGTC
rJMSF025M05- CCTGTATGGCCTGAGGTATATTTGTTGTAACTGTACCCGCTTTTGGATTTGGCATGAGTC
JMFN037O02+ CCTCTATAGCCTGGGGTATATTTGTCGTAACTGTACCCGCTTTTGGATTTGGCATTAGTC
rJMSF012G19- CCTGTATGGCCTGAGGTATATTTGTTGTAACTGTACCCGCTTTTGGATTTGGCATGAGTC
____________________________________________________________
consensus CCTGTATGGCCTGAGGTATATTTGTTGTAACTGTACCCGCTTTTGGATTTGGCATGAGTC
. : . : . : . : . : . :
rJMFF028J02- C
rJMFF016O21- CCCGAGGCCCCAAGATTCTTCCTAAACTGGCAACCTTAGGCATCATATCTGGTGTCGCAA
rJMSF041L13- CCCGAGGCCCCAAGATTCTTCCTAAACTGGCAACCTTAGGCATCATATCTGGTGTTGCAA
rJMSF026K06- CCCGAGGCCCCAAGATTCTTCCTAAACTGGCAACCTTAGGCATCATATCTGGTGTTGCAA
rJMFF021I13- CCCGAGGCCCCAAGATTCTTCCTAAACTGGCAACCTTAGGCATCATATCTGGTGTTGCAA
rJMSF037P18- CCCGAGGCCCCAAGATTCTTCCTAAACTGGCAACCTTAGGCATCATATCTGGTGTTGCAA
rJMSF032B12- CCCGAGGCCCCAAGATTCTTCCTAAACTGGCAACCTTAGGCATCATATCTGGTGTTGCAA
rJMSF019E17- CCCGAGGCCCCAAGATTCTTCCTAAACTGGCAACCTTAGGCATCATATCTGGTGTTGCAA
rJMSF025M05- CCCGAGGCCCCAAGATTCTTCCTAAACTGGCAACCTTAGGCATCATATCTGGTGTTGCAA
JMFN037O02+ CTCGAGGCCCTAAAATTCTTCCTAGACTGGCAACCTTAGGCATCATATCTGGCGTTGCAA
rJMSF012G19- CCCGAGGCCCCAAGATTCTTCCTAAACTGGCAACCTTAGGCATCATATCTGGTGTTGCAA
JMSF041L13+ CCTAAACTGGCAACCTTAGGCATCATATCTGGTGTTGCAA
____________________________________________________________
consensus CCCGAGGCCCCAAGATTCTTCCTAAACTGGCAACCTTAGGCATCATATCTGGTGTTGCAA
. : . : . : . : . : . :
rJMFF016O21- TTAGTTTATCAAAATCCATGAATCCTCCTTTTATTTGTTCGATCAAATCCTCTCCACC-A
rJMSF041L13- TTAGTTTATCAAAATCCATGAATCCTCCTTTTATTTGTTCGATCAAATCCTCTCCACCNA
rJMSF026K06- TTAGTTTATCAAAATCCATGAATCCTCCTTTTATTTGTTCGATCAAATCCTCTCCACC-A
rJMFF021I13- TTAGTTTATCAAAATCCATGAATCCTCCTTTTATTTGTTCGATCAAATCCTCTCCACC-A
rJMSF037P18- TTAGTTTATCAAAATCCATGAATCCTCCTTTTATTTGTTCGATCAAATCCTCTCCACC-A
rJMSF032B12- TTAGTTTATCAAAATCCATGAATCCTCCTTTTATTTGTTCGATCAAATCCTCTCCACC-A
rJMSF019E17- TTAGTTTATCAAAATCCATGAATCCTCCTTTTATTTGTTCGATCAAATCCTCTCCACC-A
rJMSF025M05- TTAGTTTATCAAAATCCATGAATCCTCCTTTTATTTGTTCGATCAAATCCTCTCCACC-A
JMFN037O02+ TTAATTTATCAAAATCCAT
rJMSF012G19- TTAGTTTATCAAAATCCATGAATCCTCCTTTTATTTGTTCGATCAAATCCTCTCCACC-A
JMSF041L13+ TTAGTTTATCAAAATCCATGAATCCTCCTTTTATTTGTTCGATCAAATCCTCTCCACC-A
JMSF025M05+ TCTCCACC-A
JMSF032B12+ CGATCAAATCCTCTCCACC-A
____________________________________________________________
consensus TTAGTTTATCAAAATCCATGAATCCTCCTTTTATTTGTTCGATCAAATCCTCTCCACC-A
. : . : . : . : . : . :
rJMFF016O21- ACCAGATCAGCTCCAGCATTTTTTGCATCATCG-AACTTCTCACCTTGGGTAAGTACAGC
rJMSF041L13- ACCAGATCAGCTCCAGCATTTTTTGGCTTCATCGAACTTCTCACCTTGGGTAAGTACAGC
rJMSF026K06- ACCAGATCAGCTCCAGCATTTTTTGCTTCATCG-AACTTCTCACCTTGGGTAAGTACAGC
rJMFF021I13- ACCAGATCAGCTCCAGCATTTTTTGCTTCATCGAAACTTCTCACCTTGGGTAAGTACAGC
rJMSF037P18- ACCAGATCAGCTCCAGCATTTTTTGCTTCATCG-AACTTCTCACCT
rJMSF032B12- ACCAGATCAGCTCCAGCATTTTTTGCTTCATCG-AACTTCTCACCTTGGGTAAGTACAGC
rJMSF019E17- ACCAGATCAGCTCCAGCATTTTTTGCTTCATCG-AACTTCTCACCTTGGGTAAGTACAGC
rJMSF025M05- ACCAGATCAGCTCCAGCATTTTTTGCTTCATCG-AACTTCTCACCTTGGGTAAGTACAGC
rJMSF012G19- ACCAGATCAGCTCCAGCATTTTTTGCTTCATCG-AACTTCTCACCTTGGGTAAGTACAGC
JMSF041L13+ ACCAGATCAGCTCCAGCATTTTTTGCTTCATCG-AACTTCTCACCTTGGGTAAGTACAGC
JMSF025M05+ ACCAGATCAGCTCCAGCATTTTTTGCTTCATCG-AACTTCTCACCTTGGGTAAGTACAGC
JMSF037P18+ ACCTTGGGTAAGTACAGC
JMSF032B12+ ACCAGATCAGCTCCAGCATTTTTTGCTTCATCG-AACTTCTCACCTTGGGTAAGTACAGC
____________________________________________________________
consensus ACCAGATCAGCTCCAGCATTTTTTGCTTCATCG-AACTTCTCACCTTGGGTAAGTACAGC
. : . : . : . : . : . :
rJMFF016O21- CACT
rJMSF041L13- CACTTTAATAGTCTGG
rJMSF026K06- CACTTTAATAGTCTGGCCCGTTCCCTTGG
rJMFF021I13- CACTTTA
rJMSF032B12- CACTTTAATAGTCTGGCCCGTTCCCTTGGGCAAATTTACAGTCGCCCTCAGCTG
rJMSF019E17- CACTTTAATAGTCTGGCCCGTTCCCTTGGGCAAATTTACAGTCGCCCTCAGCTGTTGGTC
rJMSF025M05- CACTTTAATAGTCTGGNCCGTTCCCTTGGGCAAATTTACAGTCGCCCTCAGCTGNTGGTC
rJMSF012G19- CACTTTAATAGTCTGGCCCGTTCCCTTGGGCAAATTTACAGTCGCCCTCAGCTGTTGGTC
JMSF041L13+ CACTTTAATAGTCTGGCCCGTTCCCTTGGGCAAATTTACAGTCACCCTCAGCTGTTGGTC
JMSF025M05+ CACTTTAATAGTCTGGCCCGTTCCCTTGGGCAAATTTACAGTCGCCCTCAGCTGTTGGTC
JMSF037P18+ CACTTTAATAGTCTGGCCCGTTCCCTTGGGCAAATTTACAGTCGCCCTCAGCTGTTGGTC
JMSF019E17+ TCAGCTGTTGGTC
JMSF032B12+ CACTTTAATAGTCTGGCCCGTTCCCTTGGGCAAATTTACAGTCGCCCTCAGCTGTTGGTC
JMFF016O21+ TTTACAGTCGCCCTCAGCTGTTGGTC
JMSF026K06+ AGTCTGGCCCGTTCCCTTGGGCAAATTTACAGTCGCCNTCAGCTGTTGGTC
____________________________________________________________
consensus CACTTTAATAGTCTGGCCCGTTCCCTTGGGCAAATTTACAGTCGCCCTCAGCTGTTGGTC
. : . : . : . : . : . :
rJMSF019E17- GTTATATTTT
rJMSF025M05- GTTATATTTTGGGTCAATATTTAAC
rJMSF012G19- GTTATATTTTGGGTCAATATTTAACCG-AAATGGGCTTCAGCTGNTTCCACAAACTTTGT
JMSF041L13+ GTTATATTTTGGGTCAATATTTAACCGAAAATGGGCTTCAGCTGTTTCCACAAACTTTGT
JMSF025M05+ GTTATATTTTGGGTCAATATTTAACCGAAAATGGGCTTCAGCTGTTTCCACAAACTTTGT
JMSF037P18+ GTTATATTTTGGGTCAATATTTAACCGAAAATGGGCTTCAGCTGTTTCCACAAACTTTGT
JMSF019E17+ GTTATATTTTGGGTCAATATTTAACCGAAAATGGGCTTCAGCTGTTTCCACAAACTTTGT
JMFF021I13+ GTCAATATTTAACCGAAAATGGGCTTCAGCTGTTTCCACAAACTTTGT
JMSF032B12+ GTTATATTTTGGGTCAATATTTAACCGAAAATGGGCTTCAGCTGTTTCCACAAACTTTGT
JMFF028J02+ ATGGGCTTCAGCTGTTTCCACAAACTTTGT
JMFF016O21+ GTTATATTTTGGGTCAATATTTANCCGAAAATGGGCTTCAGCTGTTTCCACAAACTTTGT
JMSF026K06+ GTTATATTTTGGGTCAATATTTAACCGAAAATGGGCTTCAGCTGTTTCCACAAACTTTGT
____________________________________________________________
consensus GTTATATTTTGGGTCAATATTTAACCGAAAATGGGCTTCAGCTGTTTCCACAAACTTTGT
. : . : . : . : . : . :
rJMSF012G19- GCGTGCTGTTTCC
JMSF041L13+ GCGTGCTGTTTCCTTGAGCAGTGATATAGCTGTTTTCAAGTCATACTCTTTCTTATTCTC
JMSF025M05+ GCGTGCTGTTTCCTTGAGCAGTGATATAGCTGTTTTCAAGTCATACTCTTTCTTATTCTC
JMSF037P18+ GCGTGCTGTTTCCTTGAGCAGTGATATAGCTGTTTTCAAGTCATACTCTTTCTTATTCTC
JMSF019E17+ GCGTGCTGTTTCCTTGAGCAGTGATATAGCTGTTTTCAAGTCATACTCTTTCTTATTCTC
JMFF021I13+ GCGTGCTGTTTCCTTGAGCAGTGATATAGCTGTTTTCAAGTCATACTCTTTCTTATTCTC
JMSF032B12+ GCGTGCTGTTTCCTTGAGCAGTGATATAGCTGTTTTCAAGTCATACTCTTTCTTATTCTC
JMFF028J02+ GCGTGCTGTTTCCTTGAGCAGTGATATAGCTGTTTTCAAGTCATACTCTTTCTTATTCTC
JMFF016O21+ GCGTGCTGTTTCCTTGAGCAGTGATATAGCTGTTTTCAAGTCATACTCTTTCTTATTCTC
JMSF026K06+ GCGTGCTGTTTCCTTGAGCAGTGATATAGCTGTTTTCAAGTCATACTCTTTCTTATTCTC
____________________________________________________________
consensus GCGTGCTGTTTCCTTGAGCAGTGATATAGCTGTTTTCAAGTCATACTCTTTCTTATTCTC
. : . : . : . : . : . :
JMSF041L13+ CCTCAACTTCTGAATCTCCAAGAATCTCTTAGACCTTGTTCTATCCCTCTTGAGAGGCAA
JMSF025M05+ CCTCAACTTCTGAATCTCCAAGAATCTCTTAGACCTTGTTCTATCCCTCTTGAGAGGCAA
JMSF037P18+ CCTCAACTTCTGAATCTCCAAGAATCTCTTAGACCTTGTTCTATCCCTCTTGAGAGGCAA
JMSF019E17+ CCTCAACTTCTGAATCTCCAAGAATCTCTTAGACCTTGTTCTATCCCTCTTGAGAGGCAA
JMFF021I13+ CCTCAACTTCTGAATCTCCAAGAATCTCTTAGACCTTGTTCTATCCCTCTTGAGAGGCAA
JMSF032B12+ CCTCAACTTCTGAATCTCCAAGAATCTCTTAGACCTTGTTCTATCCCTCTTGAGAGGCAA
JMFF028J02+ CCTCAACTTCTGAATCTCCAAGAATCTCTTAGACCTTGTTCTATCCCTCTTGAGAGGCAA
JMFF016O21+ CCTCAACTTCTGAATCTCCAAGAATCTCTTAGACCTTGTTCTATCCCTCTTGAGAGGCAA
JMSF026K06+ CCTCAACTTCTGAATCTCCAAGAATCTCTTAGACCTTGTTCTATCCCTCTTGAGAGGCAA
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consensus CCTCAACTTCTGAATCTCCAAGAATCTCTTAGACCTTGTTCTATCCCTCTTGAGAGGCAA
. : . : . : . : . : . :
JMSF041L13+ CGCGGCCTTGCCTTTCTTGGGCTTCGTGGGAGCGGTTGAAACGGCGGCGGCGGCGGCAGA
JMSF025M05+ CGCGGCCTTGCCTTTCTTGGGCTTCGTGGGAGCGGTTGAAACGGCGGCGGCGGCGGCAGA
JMSF037P18+ CGCGGCCTTGCCTTTCTTGGGCTTCGTGGGAGCGGTTGAAACGGCGGCGGCGGCGGCAGA
JMSF019E17+ CGCGGCCTTGCCTTTCTTGGGCTTCGTGGGAGCGGTTGAAACGGCGGCGGCGGCGGCAGA
JMFF021I13+ CGCGGCCTTGCCTTTCTTGGGCTTCGTGGGAGCGGTTGAAACGGCGGCGGCGGCGGCAGA
JMSF032B12+ CGCGGCCTTGCCTTTCTTGGGCTTCGTGGGAGCGGTTGAAACGGCGGCGGCGGCGGCAGA
JMFF028J02+ CGCGGCCTTGCCTTTCTTGGGCTTCGTGGGANCGGTTGAAACGGCGGCGGCGGCGGCAGA
JMFF016O21+ CGCGGCCTTGCCTTTCTTGGGCTTCGTGGGAGCGGTTGAAACGGCGGCGGCGGCGGCAGA
JMSF026K06+ CGCGGCCTTGCCTTTCTTGGGCTTCGTGGGAGCGGTTGAAACGGCGGCGGCGGCGGCAGA
____________________________________________________________
consensus CGCGGCCTTGCCTTTCTTGGGCTTCGTGGGAGCGGTTGAAACGGCGGCGGCGGCGGCAGA
. : . : . : . : . : . :
JMSF041L13+ CTCTTCCCCGTCTAACCCTTCCACATCCTCAGAAACCTCAGCTTCCGCGGCGACAGCAGC
JMSF006G11+ TCAGAAACNTCAGCTTCCGCGGCGACAGCAGC
JMSF025M05+ CTCTTCCCCGTCTAACCCTTCCACATCCTCAGAAACCTCAGCTTCCGCGGCGACAGCAGC
JMSF012G19+ CGCGGCGACAGCAGC
JMSF037P18+ CTCTTCCCCGTCTAACCCTTCCACATCCTCAGAAACCTCAGCTTCCGCGGCGACAGCAGC
JMSF019E17+ CTCTTCCCCGTCTAACCCTTCCACATCCTCAGAAACCTCAGCTTCCGCGGCGACAGCAGC
JMFF021I13+ CTCTTCCCCGTCTAACCCTTCCACATCCTCAGAAACCTCAGCTTCCGCGGCGACAGCAGC
JMSF032B12+ CTCTTCCCCGTCTAACCCTTCCACATCCTCAGAAACCTCAGCTTCCGCGGCGACAGCAGC
JMFF028J02+ CTCTTCCCCGTCTAACCCTTCCACATCCTCAGAAACCTCAGCTTCCGCGGCGACAGCAGC
JMFF016O21+ CTCTTCCCCGTCTAACCCTTCCACATCCTCAGAAACCTCAGCTTCCGCGGCGACAGCAGC
JMSF026K06+ CTCTTCCCCGTCTAACCCTTCCACATCCTCAGAAACCTCAGCTTCCGCGGCGACAGCAGC
____________________________________________________________
consensus CTCTTCCCCGTCTAACCCTTCCACATCCTCAGAAACCTCAGCTTCCGCGGCGACAGCAGC
. : . : . : . : . : . :
JMSF041L13+ GGCGGCCGCAGCGATTGATTTTGAGGAATGCCCATTTTCAGCGGAGTTGAAAAGAGAGGG
JMSF006G11+ GGCGGCCGCAGCGATTGATTTTGAGGAATGCCCATTTTCAGCGGAGTTGAAAAGAGAGGG
JMSF025M05+ GGCGGCCGCAGCGATTGATTTTGAGGAATGCCCATTTTCAGCGGAGTTGAAAAGAGAGGG
JMSF012G19+ GGCGGCCGCAGCGATTGATTTTGAGGAATGCCCATTTTCAGCGGAGTTGAAAAGAGAGGG
JMSF037P18+ GGCGGCCGCAGCGATTGATTTTGAGGAATGCCCATTTTCAGCGGAGTTGAAAAGAGAGGG
JMSF019E17+ GGCGGCCGCAGCGATTGATTTTGAGGAATGCCCATTTTCAGCGGAGTTGAAAAGAGAGGG
JMFF021I13+ GGCGGCCGCAGCGATTGATTTTGAGGAATGCCCATTTTCAGCGGAGTTGAAAAGAGAGGG
JMSF032B12+ GGCGGCCGCAGCGATTGATTTTGAGGAATGCCCATTTTCAGCGGAGTTGAAAAGAGAGGG
JMFF028J02+ GGCGGCCGCAGCGATTGATTTTGAGGAATGCCCATTTTCAGCGGAGTTGAAAAGAGAGGG
JMFF016O21+ GGCGGCCGCAGCGATTGATTTTGAGGAATGCCCATTTTCAGCGGAGTTGAAAAGAGAGGG
JMSF026K06+ GGCGGCCGCAGCGATTGATTTTGAGGAATGCCCATTTTCAGCGGGGTTGAAAAGAGAGGG
____________________________________________________________
consensus GGCGGCCGCAGCGATTGATTTTGAGGAATGCCCATTTTCAGCGGAGTTGAAAAGAGAGGG
. : . : . : . : . : . :
JMSF041L13+ CTTTCTGTCTCGGAAATGAAGGATGAGAGGGTTGAAAGAGAAAGTCTTGTTGGGGGAGAA
JMSF006G11+ CTTTCTGTCTCGGAAATGAAGGATGAGAGGGTTGAAAGAGAAAGTCTTGTTGGGGGAGAA
JMSF025M05+ CTTTCTGTCTCGGAAATGAAGGATGAGAGGGTTGAAAGAGAAAGTCTTGTTGGGGGAGAA
JMSF012G19+ CTTTCTGTCTCGGAAATGAAGGATGAGAGGGTTGAAAGAGAAAGTCTTGTTGGGGGAGAA
JMSF037P18+ CTTTCTGTCTCGGAAATGAAGGATGAGAGGGTTGAAAGAGAAAGTCTTGTTGGGGGAGAA
JMSF019E17+ CTTTCTGTCTCGGAAATGAAGGATGAGAGGGTTGAAAGAGAAAGTCTTGTTGGGGGAGAA
JMFF021I13+ CTTTCTGTCTCGGAAATGAAGGATGAGAGGGTTGAAAGAGAAAGTCTTGTTGGGGGAGAA
JMSF032B12+ CTTTCTGTCTCGGAAATGAAGGATGAGAGGGTTGAAAGAGAAAGTCTTGTTGGGGGAGAA
JMFF028J02+ CTTTCTGTCTCGGAAATGAAGGATGAGAGGGTTGAAAGAGAAAGTCTTGTTGGGGGAGAA
JMFF016O21+ CTTTCTGTCTCGGAAATGAAGGATGAGAGGGTTGAAAGAGAAAGTCTTGTTGGGGGAGAA
JMSF026K06+ CTTTCTGTCTCGGAAATGAAGGATGAGAGGGTTGAAAGAGAAAGTCTTGTTGGGGGAGAA
____________________________________________________________
consensus CTTTCTGTCTCGGAAATGAAGGATGAGAGGGTTGAAAGAGAAAGTCTTGTTGGGGGAGAA
. : . : . : . : . : . :
JMSF041L13+ GAAGAGGGGAGCTTTGCAGGAGAGAGGGTGGGTGCAGGGACTATGTTCCTGGTGAAGAAG
JMSF006G11+ GAAGAGGGGAGCTTTGCAGGAGAGAGGGTGGGTGCAGGGACTATGTTCCTGGTGAAGAAG
JMSF025M05+ GAAGAGGGGAGCTTTGCAGGAGAGAGGGTGGGTGCAGGGACTATGTTCCTGGTGAAGAAG
JMSF012G19+ GAAGAGGGGAGCTTTGCAGGAGAGAGGGTGGGTGCAGGGACTATGTTCCTGGTGAAGAAG
JMSF037P18+ GAAGAGGGGAGCTTTGCAGGAGAGAGGGTGGGTGCAGGGACTATGTTCCTGGTGAAGAAG
JMSF019E17+ GAAGAGGGGAGCTTTGCAGGAGAGAGGGTGGGTGCAGGGACTATGTTCCTGGTGAAGAAG
JMFF021I13+ GAAGAGGGGAGCTTTGCAGGAGAGAGGGTGGGTGCAGGGACTATGTTCCTGGTGAAGAAG
JMSF032B12+ GAAGAGGGGAGCTTTGCAGGAGAGAGGGTGGGTGCAGGGACTATGTTCCTGGTGAAGAAG
JMFF028J02+ GAAGAGGGGAGCTTTGCAGGAGAGAGGGTGGGTGCAGGGACTATGTTCCTGGTGAAGAAG
JMFF016O21+ GAAGAGGGGAGCTTTGCAGGAGAGAGGGTGGGTGCAGGGACTATGTTCCTGGTGAAGAAG
JMSF026K06+ GAAGAGGGGAGCTTTGCAGGAGAGAGGGTGGGTGCAGGGACTATGTTCCTGGTGAAGAAG
____________________________________________________________
consensus GAAGAGGGGAGCTTTGCAGGAGAGAGGGTGGGTGCAGGGACTATGTTCCTGGTGAAGAAG
. : . : . : . : . : . :
JMSF041L13+ TGAAGAGGAGAGAGTGAGAGTAGAAGTGGTAGCAGAGGAAGCCATTGTTC
JMSF006G11+ TGAAGAGGAGAGAGTGAGAGTAGAAGTGGTAGCAGAGGAAGCCATTGTT
JMSF025M05+ TGAAGAGGAGAGAGTGAGAGTAGAAGTGGTAGCAGAGGAAGCCATTGTT
JMSF012G19+ TGAAGAGGAGAGAGTGAGAGTAGAAGTGGTAGCAGAGGAAGCCATTGTTCC
JMSF037P18+ TGAAGAGGAGAGAGTGAGAGTAGAAGTGGTAGCAGAGGAAGCCATTGTTCC
JMSF019E17+ TGAAGAGGAGAGAGTGAGAGTAGAAGTGGTAGCAGAGGAAGCCATTGTTCC
JMFF021I13+ TGAAGAGGAGAGAGTGAGAGTAGAAGTGGTAGCAGAGGAAGCCATTGTTCC
JMSF032B12+ TGAAGAGGAGAGAGTGAGAGTAGAAGTGGTAGCAGAGGAAGCCATTGTTCC
JMFF028J02+ TGAAGAGGAGAGAGTGAGAGTAGAAGTGGTAGCAGAGGAAGCCATTGTTCCAGAGAAGCT
JMFF016O21+ TGAAGAGGAGAGAGTGAGAGTAGAAGTGGTAGCAGAGGAAGCCATTGTTCCAGAGAAGCT
JMSF026K06+ TGAAGAGGAGAGAGTGAGAGTAGAAGTGGTAGCAGAGGAAGCCATTGTTCCAGAGAAGCT
____________________________________________________________
consensus TGAAGAGGAGAGAGTGAGAGTAGAAGTGGTAGCAGAGGAAGCCATTGTTCCAGAGAAGCT
. : . : . : . : . : . :
JMFF028J02+ TCTAGTTGGGAACTCTGTTTATACGTCTAT
JMFF016O21+ TCTAGTTGGGAACTCTGTTTATACGTCTATGGCTTATCCATGTGGC
JMSF026K06+ TCTAGTTGGGAACTCTGTTTATACGTCTATGGCTTATCCATGTGGCAAGTGATGACGATC
____________________________________________________________
consensus TCTAGTTGGGAACTCTGTTTATACGTCTATGGCTTATCCATGTGGCAAGTGATGACGATC