clone | seq. | 5'-sequence | 3'-sequence | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
JMFF041A23 | Sequence | 651 | 003749 (10) | ref|XP_009779793.1| | 1e-110 | PREDICTED: outer envelope pore protein 24A, chloroplastic [Nicotiana sylvestris | 569 | 003749 (10) | emb|CDP07535.1| | 1e-34 | unnamed protein product [Coffea canephora] |
JMFN004H08 | Sequence | 672 | 003749 (10) | ref|XP_009779793.1| | 2e-105 | PREDICTED: outer envelope pore protein 24A, chloroplastic [Nicotiana sylvestris | |||||
JMFN029M01 | Sequence | 627 | 003749 (10) | ref|XP_009779793.1| | 2e-106 | PREDICTED: outer envelope pore protein 24A, chloroplastic [Nicotiana sylvestris | |||||
JMSF007F09 | Sequence | 457 | 003749 (10) | ref|XP_009779793.1| | 2e-74 | PREDICTED: outer envelope pore protein 24A, chloroplastic [Nicotiana sylvestris | 763 | 003749 (10) | ref|XP_009779793.1| | 5e-111 | PREDICTED: outer envelope pore protein 24A, chloroplastic [Nicotiana sylvestris |
JMSF031B16 | Sequence | 606 | 003749 (10) | ref|XP_004238246.1| | 5e-107 | PREDICTED: outer envelope pore protein 24A, chloroplastic [Solanum lycopersicum | 734 | 003749 (10) | emb|CDP07535.1| | 2e-80 | unnamed protein product [Coffea canephora] |
JMSF032G10 | Sequence | 626 | 003749 (10) | ref|XP_004238246.1| | 2e-106 | PREDICTED: outer envelope pore protein 24A, chloroplastic [Solanum lycopersicum | 716 | 003749 (10) | emb|CDP07535.1| | 8e-103 | unnamed protein product [Coffea canephora] |
Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.
SCORE============================================Contig003749============================================1015 17 -------------------------------------------------------------->JMFF041A23 <-------------------------------------------------------rJMFF041A23 68 ----------------------------------------------------------->JMSF031B16 <-----------------------------------------------------------------------rJMSF031B16 168 ------------------------------------------------------------>JMSF032G10 <----------------------------------------------------------------------rJMSF032G10 220 ------------------------------------------>JMSF007F09 <-------------------------------------------------------------------------rJMSF007F09
The following clones don't have the opposite end in this pair.
------------------------------------------------------------->JMFN029M01- ---------------------------------------------------------------->JMFN004H08-