| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF041A23 | Sequence | 651 | 003749 (10) | ref|XP_009779793.1| | 1e-110 | PREDICTED: outer envelope pore protein 24A, chloroplastic [Nicotiana sylvestris | 569 | 003749 (10) | emb|CDP07535.1| | 1e-34 | unnamed protein product [Coffea canephora] |
| JMFN004H08 | Sequence | 672 | 003749 (10) | ref|XP_009779793.1| | 2e-105 | PREDICTED: outer envelope pore protein 24A, chloroplastic [Nicotiana sylvestris | |||||
| JMFN029M01 | Sequence | 627 | 003749 (10) | ref|XP_009779793.1| | 2e-106 | PREDICTED: outer envelope pore protein 24A, chloroplastic [Nicotiana sylvestris | |||||
| JMSF007F09 | Sequence | 457 | 003749 (10) | ref|XP_009779793.1| | 2e-74 | PREDICTED: outer envelope pore protein 24A, chloroplastic [Nicotiana sylvestris | 763 | 003749 (10) | ref|XP_009779793.1| | 5e-111 | PREDICTED: outer envelope pore protein 24A, chloroplastic [Nicotiana sylvestris |
| JMSF031B16 | Sequence | 606 | 003749 (10) | ref|XP_004238246.1| | 5e-107 | PREDICTED: outer envelope pore protein 24A, chloroplastic [Solanum lycopersicum | 734 | 003749 (10) | emb|CDP07535.1| | 2e-80 | unnamed protein product [Coffea canephora] |
| JMSF032G10 | Sequence | 626 | 003749 (10) | ref|XP_004238246.1| | 2e-106 | PREDICTED: outer envelope pore protein 24A, chloroplastic [Solanum lycopersicum | 716 | 003749 (10) | emb|CDP07535.1| | 8e-103 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMFF041A23- GTGTATAACCAATAGACTACATTCATTTTATTCAGTGGGCATGAAAATGGTGCTT
rJMSF031B16- TGGTGCTT
____________________________________________________________
consensus GTGTATAACCAATAGACTACATTCATTTTATTCAGTGGGCATGAAAATGGTGCTT
. : . : . : . : . : . :
rJMFF041A23- GGCAAGCTGCTGAAATCATCAGTAACCTAACCAAAACATTTTTTCTAAGACTTGATGCAA
rJMSF031B16- GGCAAGCTGCTGAAATCATCAGTAACCTAACCAAAACATTTTTTCTAAGACTTGATGCAA
____________________________________________________________
consensus GGCAAGCTGCTGAAATCATCAGTAACCTAACCAAAACATTTTTTCTAAGACTTGATGCAA
. : . : . : . : . : . :
rJMFF041A23- AGGTTTCTTGAACAATGGACACAGTATCTAAACAAAACCATTGGAAAATAAAATTTTGGA
rJMSF031B16- AGGTTTCTTGAACAATGGACACAGTATCTAAACAAAACCATTGGAAAATAAAATTTTGGA
rJMSF032G10- TTTTGGA
____________________________________________________________
consensus AGGTTTCTTGAACAATGGACACAGTATCTAAACAAAACCATTGGAAAATAAAATTTTGGA
. : . : . : . : . : . :
rJMFF041A23- TTTGTCCACGACACAATATTCGGCTCCATGTTTTGAATACACCGACAATATTAGCTGTGG
rJMSF031B16- TTTGTCCACGACACAATATTCGGCTCCATGTTTTGAATACACCGACAATATTAGCTGTGG
rJMSF032G10- TTTGTCCACGACACAATATTCGGCTCCATGTTTTGAATACACCGACAATATTAGCTGTGG
rJMSF007F09- GTTTTGAATACACCGACAATATTAGCTGTGG
____________________________________________________________
consensus TTTGTCCACGACACAATATTCGGCTCCATGTTTTGAATACACCGACAATATTAGCTGTGG
. : . : . : . : . : . :
rJMFF041A23- AAAGAAGCCAGACGATGATAGTCACTAGGTCAATGAATATGGTTTGTTTGTATGATTGCA
rJMSF031B16- AAAGAAGCCAGACGATGATAGTCACTAGGTCAATGAATATGGTTTGTTTGTATGATTGCA
rJMSF032G10- AAAGAAGCCAGACGATGATAGTCACTAGGTCAATGAATATGGTTTGTTTGTATGATTGCA
JMFN004H08+ TTGTTTGTATGATGNCA
rJMSF007F09- AAAGAAGCCAGACGATGATAGTCACTAGGTCAATGAATATGGTTTGTTTGTATGATTGCA
____________________________________________________________
consensus AAAGAAGCCAGACGATGATAGTCACTAGGTCAATGAATATGGTTTGTTTGTATGATTGCA
. : . : . : . : . : . :
rJMFF041A23- GCAAGAAGATGAAAACGACAGAATCATGATACAGAGAAGCATCACATTTCAAAGTCCCAG
rJMSF031B16- GCAAGAAGATGAAAACGACAGAATCATGATACAGAGAAGCATCACATTTCAAAGTCCCAG
rJMSF032G10- GCAAGAAGATGAAAACGACAGAATCATGATACAGAGAAGCATCACATTTCAAAGTCCCAG
JMFN004H08+ GCAAGAAGATGAAAACGACAGAATCATGATACAGAGAAGCATCACATTTCANAGTCNCAG
rJMSF007F09- GCAAGAAGATGAAAACGACAGAATCATGATACAGAGAAGCTTCACATTTCAAAGTCCCAG
____________________________________________________________
consensus GCAAGAAGATGAAAACGACAGAATCATGATACAGAGAAGCATCACATTTCAAAGTCCCAG
. : . : . : . : . : . :
rJMFF041A23- GTGCTCTCGGCAATAACCTTTGGCCTTTTAAGATCCTCGGCCAAATTAAGAGATGCAGAA
rJMSF031B16- GTGCTCTCGGCAATAACCTTTGGCCTTTTAAGATCCTCGGCCAAATTAAGAGATGCAGAA
rJMSF032G10- GTGCTCTCGGCAATAACCTTTGGCCTTTTAAGATCCTCGGCCAAATTAAGAGATGCAGAA
JMFN004H08+ GTGCTCTCGGCAATAACCTTTGGCCTTNTAAGATCCTCGGCCAAATTAAGAGATGCAGAA
rJMSF007F09- GTGCTCTCGGCAATAACCTTTGGCCTTTTAAGATCCTCGGCCAAATTAAGAGATGCAGAA
JMSF031B16+ CCTCGGCCAAATTAAGAGATGCAGAA
JMFN029M01+ GCAATAACCTTGGCCCTTTNAAGATCCTCGGCCAAATTAAGAGATGCAGAA
JMFF041A23+ CTCTCGGCAATAACCTTTGGCCTTTTAAGATCCTCGGCCAAATTAAGAGATGCAGAA
JMSF032G10+ TCGGCCAAATTAAGAGATGCAGAA
____________________________________________________________
consensus GTGCTCTCGGCAATAACCTTTGGCCTTTTAAGATCCTCGGCCAAATTAAGAGATGCAGAA
. : . : . : . : . : . :
rJMFF041A23- ATCTTGAAAGTGCCATTCAATTTGGAATTCCTGGACCATTCTAGGCCCAAGTTCTTGTTG
rJMSF031B16- ATCTTGAAAGTGCCATTCAATTTGGAATTCCTGGACCATTCTAGGCCCAAGTTCTTGTTG
rJMSF032G10- ATCTTGAAAGTGCCATTCAATTTGGAATTCCTGGACCATTCTAGGCCCAAGTTCTTGTTG
JMFN004H08+ ATCTTGAAAGTGCCATTCAATTTGGAATTCCTGGACCATTCTAGGCCCAAGTTCTTGTTG
rJMSF007F09- ATCTTGAAAGTGCCATTCAATTTGGAATTCCTGGACCATTCTAGGCCCAAGTTCTTGTTG
JMSF031B16+ ATCTTGAAAGTGCCATTCAATTTGGAATTCCTGGACCATTCTAGGCCCAAGTTCTTGTTG
JMFN029M01+ ATCTGAAAGTGCCCATTCAATTTGGAATTCCTGGACCATTCTAGGCCCAAGTTCTTGTTG
JMFF041A23+ ATCTTGAAAGTGCCATTCAATTTGGAATTCCTGGACCATTCTAGGCCCAAGTTCTTGTTG
JMSF032G10+ ATCTTGAAAGTGCCATTCAATTTGGAATTCCTGGACCATTCTAGGCCCAAGTTCTTGTTG
____________________________________________________________
consensus ATCTTGAAAGTGCCATTCAATTTGGAATTCCTGGACCATTCTAGGCCCAAGTTCTTGTTG
. : . : . : . : . : . :
rJMFF041A23- GACGTCTGGAACATAGCTTTCAACACATCGTCCCCGTAAACCCTCTGCGAAATAGAGAAA
rJMSF031B16- GACGTCTGGAACATAGCTTTCAACACATCGTCCCCGTAAACCCTCTGCGAAATAGAGAAA
rJMSF032G10- GACGTCTGGAACATAGCTTTCAACACATCGTCCCCGTAAACCCTCTGCGAAATAGAGAAA
JMFN004H08+ GACGTCTGGAACATAGCTTTCAACACATCGTCCCCGTAAACCCTCTGCGAAATAGAGAAA
rJMSF007F09- GACGTCTGGAACATAGCTTTCAACACATCGTCCCCGTAAACCCTCTGCGAAATAGAGAAA
JMSF031B16+ GACGTCTGGAACATAGCTTTCAACACATCGTCCCCGTAAACCCTCTGCGAAATAGAGAAA
JMFN029M01+ GACGTCTGGAACATAGCTTTCAACACATCGTCCCCGTAAACCCTCTGCGAAATAGAGAAA
JMFF041A23+ GACGTCTGGAACATAGCTTTCAACACATCGTCCCCGTAAACCCTCTGCGAAATAGAGAAA
JMSF032G10+ GACGTCTGGAACATAGCTTTCAACACATCGTCCCCGTAAACCCTCTGCGAAATAGAGAAA
____________________________________________________________
consensus GACGTCTGGAACATAGCTTTCAACACATCGTCCCCGTAAACCCTCTGCGAAATAGAGAAA
. : . : . : . : . : . :
rJMFF041A23- TCCCAGGCATTCTTGGCGAAATCGTAGCTGGGCT
rJMSF031B16- TCCCAGGCATTCTTGGCGAAATCGTAGCTGGGCTCAAAGGTAGTCTGCCCCTTGTGCACA
rJMSF032G10- TCCCAGGCATTCTTGGCGAAATCGTAGCTGGGCTCAAAGGTAGTCTGCCCCTTGTGCACA
JMFN004H08+ TCCCAGGCATTCTTGGCGAAATCGTAGCTGGGCTCAAAGGTAGTCTGCCCCTTGTGCACA
rJMSF007F09- TCCCAGGCATTCTTGGCGAAATCGTAGCTGGGCTCAAAGGTAGTCTGCCCCTTGTGCACA
JMSF031B16+ TCCCAGGCATTCTTGGCGAAATCGTAGCTGGGCTCAAAGGTAGTCTGCCCCTTGTGCACA
JMFN029M01+ TCCCAGGCATTCTTGGCGAAATCGTAGCTGGGCTCAAAGGTAGTCTGCCCCTTGTGCACA
JMFF041A23+ TCCCAGGCATTCTTGGCGAAATCGTAGCTGGGCTCAAAGGTAGTCTGCCCCTTGTGCACA
JMSF007F09+ GTAGCTGGGCTCAAAGGTAGTCTGCCCCTTGTGCACA
JMSF032G10+ TCCCAGGCATTCTTGGCGAAATCGTAGCTGGGCTCAAAGGTAGTCTGCCCCTTGTGCACA
____________________________________________________________
consensus TCCCAGGCATTCTTGGCGAAATCGTAGCTGGGCTCAAAGGTAGTCTGCCCCTTGTGCACA
. : . : . : . : . : . :
rJMSF031B16- TAAGTATACTTAAGCTTACAATTCCCGGAGCCGATCAAGTGATTAGCCGAAACCTTGTTA
rJMSF032G10- TAAGTATACTTAAGCTTACAATTCCCGGAGCCGATCAAGTGATTAGCCGAAACCTTGTTA
JMFN004H08+ TAAGTATACTTAAGCTTACAATTCCCGGAGCCGATCAAGTGATTAGCCGAAACCTTGTTA
rJMSF007F09- TAAGTATACTTAAGCTTACAATTCCCGGAGCCGATCAAGTGATTAGCCGAAACCTTGTTA
JMSF031B16+ TAAGTATACTTAAGCTTACAATTCCCGGAGCCGATCAAGTGATTAGCCGAAACCTTGTTA
JMFN029M01+ TAAGTATACTTAAGCTTACAATTCCCGGAGCCGATCAAGTGATTAGCCGAAACCTTGTTA
JMFF041A23+ TAAGTATACTTAAGCTTACAATTCCCGGAGCCGATCAAGTGATTAGCCGAAACCTTGTTA
JMSF007F09+ TAAGTATACTTAAGCTTACAATTCCCGGAGCCGATCAAGTGATTAGCCGAAACCTTGTTA
JMSF032G10+ TAAGTATACTTAAGCTTACAATTCCCGGAGCCGATCAAGTGATTAGCCGAAACCTTGTTA
____________________________________________________________
consensus TAAGTATACTTAAGCTTACAATTCCCGGAGCCGATCAAGTGATTAGCCGAAACCTTGTTA
. : . : . : . : . : . :
rJMSF031B16- GCCGGATCCAAAACCAAAGTCCCATCCACCGTTGTCCGTTTATCTCCTTTGAAGTGGATG
rJMSF032G10- GCCGGATCCAAAACCAAAGTCCCATCCACCGTTGTCCGTTTATCTCCTTTGAAGTGGATG
JMFN004H08+ GCCGGATCCAAAACCAAAGTCCCATCCACCGTTGTCCGTTTATCTCCTTTGAAGTGGATG
rJMSF007F09- GCCGGATCCAAAACCAAAGTCCCATCCACCGTTGTCCGTTTATCTCCTTTGAAGTGGATG
JMSF031B16+ GCCGGATCCAAAACCAAAGTCCCATCCACCGTTGTCCGTTTATCTCCTTTGAAGTGGATG
JMFN029M01+ GCCGGATCCAAAACCAAAGTCCCATCCACCGTTGTCCGTTTATCTCCTTTGAAGTGGATG
JMFF041A23+ GCCGGATCCAAAACCAAAGTCCCATCCACCGTTGTCCGTTTATCTCCTTTGAAGTGGATG
JMSF007F09+ GCCGGATCCAAAACCAAAGTCCCATCCACCGTTGTCCGTTTATCTCCTTTGAAGTGGATG
JMSF032G10+ GCCGGATCCAAAACCAAAGTCCCATCCACCGTTGTCCGTTTATCTCCTTTGAAGTGGATG
____________________________________________________________
consensus GCCGGATCCAAAACCAAAGTCCCATCCACCGTTGTCCGTTTATCTCCTTTGAAGTGGATG
. : . : . : . : . : . :
rJMSF031B16- TAATTCAGGTTCAACGGCTTCTCCAAAACCCTAACCGTACTCATAAATTGAAACCTAAAA
rJMSF032G10- TAATTCAAGTTCAACGGCTTCTCCAAAACCCTAACCGTACTCATAAATTGAAACCTAAAA
JMFN004H08+ TAATTCAAGTTCAACGGCTTCTCCAAAACCCTAACCGTACTCATAAATTGAAACCTAAAA
rJMSF007F09- TAATTCAAGTTCAACGGCTTCTCCAAAACCCTAACCGTACTCATAAATTGAAACCTAAAA
JMSF031B16+ TAATTCAAGTTCAACGGCTTCTCCAAAACCCTAACCGTACTCATAAATTGAAACCTAAAA
JMFN029M01+ TAATTCAAGTTCAACGGCTTCTCCAAAACCCTAACCGTACTCATAAATTGAAACCTAAAA
JMFF041A23+ TAATTCAAGTTCAACGGCTTCTCCAAAACCCTAACCGTACTCATAAATTGAAACCTAAAA
JMSF007F09+ TAATTCAAGTTCAACGGCTTCTCCAAAACCCTAACCGTACTCATAAATTGAAACCTAAAA
JMSF032G10+ TAATTCAAGTTCAACGGCTTCTCCAAAACCCTAACCGTACTCATAAATTGAAACCTAAAA
____________________________________________________________
consensus TAATTCAAGTTCAACGGCTTCTCCAAAACCCTAACCGTACTCATAAATTGAAACCTAAAA
. : . : . : . : . : . :
rJMSF031B16- TCCTTG
rJMSF032G10- TCCTTGTTGGGGACGTTGTAGTCGACAATGAAAGAGCCAGGTTTCTCAAGTGAAAGAGCT
JMFN004H08+ TCCTTGTTGGGGACGTTGTAGTCGACAATGAAAGAGCCAGGTTTCTCAAGTGAAAGAGCT
rJMSF007F09- TCCTTGTTGGGGACGTTGTAGTCGACAATGAAAGAGCCAGGTTTCTCAAGTGAAAGAGCT
JMSF031B16+ TCCTTGTTGGGGACGTTGTAGTCGACAATGAAAGAGCCAGGTTTCTCAAGTGAAAGAGCT
JMFN029M01+ TCCTTGTTGGGGACGTTGTAGTCGACAATGAAAGAGCCAGGTTTCTCAAGTGAAAGAGCT
JMFF041A23+ TCCTTGTTGGGGACGTTGTAGTCGACAATGAAAGAGCCAGGTTTCTCAAGTGAAAGAGCT
JMSF007F09+ TCCTTGTTGGGGACGTTGTAGTCGACAATGAAAGAGCCAGGTTTCTCAAGTGAAAGAGCT
JMSF032G10+ TCCTTGTTGGGGACGTTGTAGTCGACAATGAAAGAGCCAGGTTTCTCAAGTGAAAGAGCT
____________________________________________________________
consensus TCCTTGTTGGGGACGTTGTAGTCGACAATGAAAGAGCCAGGTTTCTCAAGTGAAAGAGCT
. : . : . : . : . : . :
rJMSF032G10- AAGCCGTTCAAGGAGGGGCCTTTGACGACGGTGGCGTCAGTCATGGTAG
JMFN004H08+ AAGCCGTTCAAGGAGGGGCCTTTGACGACGGTGGCGTCAGTCATGGTAGCTCGGAGTTTG
rJMSF007F09- AAGCCGTTCAAGGAGGGGCCTTTGACGACGGTGGCGTCAGTCATGGTAGCTCGGAGTTTG
JMSF031B16+ AAGCCGTTCAAGGAGGGGCCTTTGACGACGGTGGCGTCAGTCATGGTAGCTCGGAGTTTG
JMFN029M01+ AAGCCGTTCAAGGAGGGGCCTTTGACGACGGTGGCGTCAGTCATGGTAGCTCGGAGTTTG
JMFF041A23+ AAGCCGTTCAAGGAGGGGCCTTTGACGACGGTGGCGTCAGTCATGGTAGCTCGGAGTTTG
JMSF007F09+ AAGCCGTTCAAGGAGGGGCCTTTGACGACGGTGGCGTCAGTCATGGTAGCTCGGAGTTTG
JMSF032G10+ AAGCCGTTCAAGGAGGGGCCTTTGACGACGGTGGCGTCAGTCATGGTAGCTCGGAGTTTG
____________________________________________________________
consensus AAGCCGTTCAAGGAGGGGCCTTTGACGACGGTGGCGTCAGTCATGGTAGCTCGGAGTTTG
. : . : . : . : . : . :
JMFN004H08+ ATGTCGCCGGCGTTGACGGAGACAGTGGCGCCGGCCGCC
rJMSF007F09- ATGTCGCCGGCGTTGACGGAGACAGTGGCGCCGGCCGCCATTTTGTCGAGGTCATAT
JMSF031B16+ ATGTCGCCGGCGTTGACGGAGACAGTGGCGCCGGCCGCCATTTTGTCGAGGTCATATCGG
JMFN029M01+ ATGTCGCCGGCGTTGACGGAGACAGTGGCGCCGGCCGCCATTTTGTCGAGGTCATATCGG
JMFF041A23+ ATGTCGCCGGCGTTGACGGAGACAGTGGCGCCGGCCGCCATTTTGTCGAGGTCATATCGG
JMSF007F09+ ATGTCGCCGGCGTTGACGGAGACAGTGGCGCCGGCCGCCATTTTGTCGAGGTCATATCGG
JMSF032G10+ ATGTCGCCGGCGTTGACGGAGACAGTGGCGCCGGCCGCCATTTTGTCGAGGTCATATCGG
____________________________________________________________
consensus ATGTCGCCGGCGTTGACGGAGACAGTGGCGCCGGCCGCCATTTTGTCGAGGTCATATCGG
. : . : . : . : . : . :
JMSF031B16+ GTTTTGAGCGAGCCCTTCATTCTCTCCGAGAGAGAAGCT
JMFN029M01+ GTTTTGAGCGAGCCCTTCATTCTCTCCGAGAGAGAA
JMFF041A23+ GTTTTGAGCGAGCCCTTCATTATCTCCGAGAGAGAAGCTAGATG
JMSF007F09+ GTTTTGAGCGAGCCCTTCATTCTCTCCGAGAGAGAAGCTAGATG
JMSF032G10+ GTTTTGAGCGAGCCCTTCATTCTCTCCGAGAGAGAAGCTAGATGGAGAGAAGAGTAAACC
____________________________________________________________
consensus GTTTTGAGCGAGCCCTTCATTCTCTCCGAGAGAGAAGCTAGATGGAGAGAAGAGTAAACC