| clone | seq. | 5'-sequence | 3'-sequence | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
| JMFN028K03 | Sequence | 356 | 006720 (11) | ||||||||
| JMSF003G13 | Sequence | 361 | 006720 (11) | 726 | 006720 (11) | ref|XP_009590591.1| | 2e-101 | PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Nicotiana tomentosiformis] | |||
| JMSF015N05 | Sequence | 470 | 006720 (11) | ref|XP_007035265.1| | 6e-16 | RNA-binding family protein [Theobroma cacao] gb|EOY06191.1| RNA-binding family p | 734 | 006720 (11) | ref|XP_009590591.1| | 2e-101 | PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Nicotiana tomentosiformis] |
| JMSF044C11 | Sequence | 751 | 006720 (11) | emb|CDO99317.1| | 8e-63 | unnamed protein product [Coffea canephora] | 744 | 006720 (11) | ref|XP_009590591.1| | 6e-99 | PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Nicotiana tomentosiformis] |
| JMSF047M16 | Sequence | 677 | 006720 (11) | ref|XP_007035265.1| | 1e-32 | RNA-binding family protein [Theobroma cacao] gb|EOY06191.1| RNA-binding family p | 750 | 006720 (11) | ref|XP_004247794.1| | 5e-101 | PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Solanum lycopersicum] |
| JMSF050J18 | Sequence | 623 | 006720 (11) | ref|XP_010650156.1| | 1e-43 | PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Vitis vinifera] emb|CBI23720 | 735 | 006720 (11) | ref|XP_009590591.1| | 2e-101 | PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Nicotiana tomentosiformis] |
Explanatory notes: "*" The opposite end is in another contig. "**" The opposite end is in same contig. "#" The opposite end is singlet. "-" The opposite end has no seqence.
SCORE============================================Contig006720============================================1142 80 ---------------------------------------------------------->JMSF047M16 <-----------------------------------------------------------------rJMSF047M16 108 ----------------------------------------------------->JMSF050J18 <---------------------------------------------------------------rJMSF050J18 120 ------------------------------->JMSF003G13 <---------------------------------------------------------------rJMSF003G13 137 ---------------------------------------->JMSF015N05 <---------------------------------------------------------------rJMSF015N05 173 ---------------------------------------------------------------->JMSF044C11 <---------------------------------------------------------------rJMSF044C11
The following clones don't have the opposite end in this pair.
-------------------------->JMFN028K03-