| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN028K03 | Sequence | 356 | 006720 (11) | ||||||||
| JMSF003G13 | Sequence | 361 | 006720 (11) | 726 | 006720 (11) | ref|XP_009590591.1| | 2e-101 | PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Nicotiana tomentosiformis] | |||
| JMSF015N05 | Sequence | 470 | 006720 (11) | ref|XP_007035265.1| | 6e-16 | RNA-binding family protein [Theobroma cacao] gb|EOY06191.1| RNA-binding family p | 734 | 006720 (11) | ref|XP_009590591.1| | 2e-101 | PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Nicotiana tomentosiformis] |
| JMSF044C11 | Sequence | 751 | 006720 (11) | emb|CDO99317.1| | 8e-63 | unnamed protein product [Coffea canephora] | 744 | 006720 (11) | ref|XP_009590591.1| | 6e-99 | PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Nicotiana tomentosiformis] |
| JMSF047M16 | Sequence | 677 | 006720 (11) | ref|XP_007035265.1| | 1e-32 | RNA-binding family protein [Theobroma cacao] gb|EOY06191.1| RNA-binding family p | 750 | 006720 (11) | ref|XP_004247794.1| | 5e-101 | PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Solanum lycopersicum] |
| JMSF050J18 | Sequence | 623 | 006720 (11) | ref|XP_010650156.1| | 1e-43 | PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Vitis vinifera] emb|CBI23720 | 735 | 006720 (11) | ref|XP_009590591.1| | 2e-101 | PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMSF015N05- AA
rJMSF050J18- AA
____________________________________________________________
consensus AA
. : . : . : . : . : . :
rJMSF015N05- TGGTCATCAACCAACTATTTGATGCTGTGCAAGAAACAGTCATCTTTCCACTAGAATTCC
rJMSF050J18- TGGTCATCAAACAACTATTTGATGCTGTGCAAGAAACAGTCATCTTTCCACTAGAATTCC
rJMSF003G13- CAACTATTTGATGCTGTGCAAGAAACAGTCATCTTTCCACTAGAATTCC
rJMSF044C11- CTAGAATTCC
____________________________________________________________
consensus TGGTCATCAACCAACTATTTGATGCTGTGCAAGAAACAGTCATCTTTCCACTAGAATTCC
. : . : . : . : . : . :
rJMSF015N05- CACTAATACTGCAAACCAAATGGTAATTTCATGCTTTGTTTAGTTCACAACTTTACAAAA
rJMSF050J18- CACTAATACTGCAAACCAAATGGTAATTTCATGCTTTGTTTAGTTCACAACTTTACAAAA
rJMSF003G13- CACTAATACTGCAAACCAAATGGTAATTTCATGCTTTGTTTAGTTCACAACTTTACAAAA
rJMSF044C11- CACTAATACTGCAAACCAAATGGTAATTTCATGCTTTGTTTAGTTCACAACTTTACAAAA
rJMSF047M16- AATGGTAATTTCATGCTTTGTTTAGTTCACAACTTTACAAAA
____________________________________________________________
consensus CACTAATACTGCAAACCAAATGGTAATTTCATGCTTTGTTTAGTTCACAACTTTACAAAA
. : . : . : . : . : . :
rJMSF015N05- TTCTATTCGCCCTACTGTTTCTTGCCCTGTGCTTGGCTGATTCGCATTGCCCTTCCTTCC
rJMSF050J18- TTCTATTCGCCCTACTGTTTCTTGCCCTGTGCTTGGCTGATTCGCATTGCCCTTCCTTCC
rJMSF003G13- TTCTATTCGCCCTACTGTTTCTTGCCCTGTGCTTGGCTGATTCGCATTGCCCTTCCTTCC
rJMSF044C11- TTCTATTCGCCCTACTGTTTCTTGCCCTGTGCTTGGCTGATTCGCATTGCCCTTCCTTCC
rJMSF047M16- TTCTATTCGCCCTACTGTTTCTTGCCCTGTGCTTGGCTGATTCGCATTGCCCTTCCTTCC
____________________________________________________________
consensus TTCTATTCGCCCTACTGTTTCTTGCCCTGTGCTTGGCTGATTCGCATTGCCCTTCCTTCC
. : . : . : . : . : . :
rJMSF015N05- AGCTCCACTTCATTCAGAGAAGTGATCGCGTTTTCCATCTCCTCCCTCGTTTCATAGCTA
rJMSF050J18- AGCTCCACTTCATTCAGAGAAGTGATCGCGTTTTCCATCTCCTCCCTCGTTTCATAGCTA
rJMSF003G13- AGCTCCACTTCATTCAGAGAAGTGATCGCGTTTTCCATCTCCTCCCTCGTTTCATAGCTA
rJMSF044C11- AGCTCCACTTCATTCAGAGAAGTGATCGCGTTTTCCATCTCCTCCCTCGTTTCATAGCTA
rJMSF047M16- AGCTCCACTTCATTCAGAGAAGTGATCGCGTTTTCCATCTCCTCCCTCGTTTCATAGCTA
____________________________________________________________
consensus AGCTCCACTTCATTCAGAGAAGTGATCGCGTTTTCCATCTCCTCCCTCGTTTCATAGCTA
. : . : . : . : . : . :
rJMSF015N05- ACAAAGCCATAGCCACGGGACCTTCCGGTCTCCCCATCATACAGAACCCTCGCTCCAACC
rJMSF050J18- ACAAAGCCATAGCCACGGGACCTTCCGGTCTCCCCATCATACAGAACCCTCGCTCCAACC
rJMSF003G13- ACAAAGCCATAGCCACGGGACCTTCCGGTCTCCCCATCATACAGAACCCTCGCTCCAACC
rJMSF044C11- ACAAAGCCATAGCCACGGGACCTTCCGGTCTCCCCATCATACAGAACCCTCGCTCCAACC
rJMSF047M16- ACAAAGCCATAGCCACGGGACCTTCCGGTCTCCCCATCATACAGAACCCTCGCTCCAACC
JMSF044C11+ CCCATCATACAGAACCCTCGCTCCAACC
____________________________________________________________
consensus ACAAAGCCATAGCCACGGGACCTTCCGGTCTCCCCATCATACAGAACCCTCGCTCCAACC
. : . : . : . : . : . :
rJMSF015N05- ACACTGCCATATGCTCCAAACG-TTTCTGTTAGCATTTCGGATGTGACAGACCAGGCTAA
rJMSF050J18- ACACTGCCATATGCTCCAAACG-TTTCTGTTAGCATTTCGGATGTGACAGACCAGGCTAA
rJMSF003G13- ACACTGCCATATGCTCCAAACG-TTTCTGTTAGCATTTCGGATGTGACAGACCAGGCTAA
rJMSF044C11- ACACTGCCATATGCTCCAAACG-TTTCTGTTAGCATTTCGGATGTGACAGACCAGGCTAA
rJMSF047M16- ACACTGCCATATGCTCCAAACG-TTTCTGTTAGCATTTCGGATGTGACAGACCAGGCTAA
JMSF044C11+ ACACTGCCATATGCTCCAAACGTTTTCTGTTAGCATTTCGGATGTGACAGACCAGGCTAA
____________________________________________________________
consensus ACACTGCCATATGCTCCAAACG-TTTCTGTTAGCATTTCGGATGTGACAGACCAGGCTAA
. : . : . : . : . : . :
rJMSF015N05- GTTGCCAACGAAAAGTTTGTACTCGGTTTCTGGATATAGAGGCTCCTTTGCCTTAGGCTT
rJMSF050J18- GTTGCCAACGAAAAGTTTGTACTCGGTTTCTGGATATAGAGGCTCCTTTGCCTTAGGCTT
rJMSF003G13- GTTGCCAACGAAAAGTTTGTACTCGGTTTCTGGATATAGAGGCTCCTTTGCCTTAGGCTT
rJMSF044C11- GTTGCCAACGAAAAGTTTGTACTCGGTTTCTGGATATAGAGGCTCCTTTGCCTTAGGCTT
rJMSF047M16- GTTGCCAACGAAAAGTTTGTACTCGGTTTCTGGATATAGAGGCTCCTTTGCCTTAGGCTT
JMSF044C11+ GTTGCCAACGAAAAGTTTGTACTCGGTTTCTGGATATAGAGGCTCCTTTGCCTTAGGCTT
JMSF050J18+ CTTAGGCTT
____________________________________________________________
consensus GTTGCCAACGAAAAGTTTGTACTCGGTTTCTGGATATAGAGGCTCCTTTGCCTTAGGCTT
. : . : . : . : . : . :
rJMSF015N05- GTCCGAGAAGTTCACCCTCAGTGTTCTACCGCCAAACACTCTTCCGTCAAGATTTTCAAT
rJMSF050J18- GTCCGAGAAGTTCACCCTCAGTGTTCTACCGCCAAACACTCTTCCGTCAAGATTTTCAAT
rJMSF003G13- GTCCGAGAAGTTCACCCTCAGTGTTCTACCGCCAAACACTCTTCCGTCAAGATTTTCAAT
rJMSF044C11- GTCCGAGAAGTTCACCCTCAGTGTTCTACCGCCAAACACTCTTCCGTCAAGATTTTCAAT
rJMSF047M16- GTCCGAGAAGTTCACCCTCAGTGTTCTACCGCCAAACACTCTTCCGTCAAGATTTTCAAT
JMSF044C11+ GTCCGAGAAGTTCACCCTCAGTGTTCTACCGCCAAACACTCTTCCGTCAAGATTTTCAAT
JMSF050J18+ GTCCGAGAAGTTCACCCTCAGTGTTCTACCGCCAAACACTCTTCCGTCAAGATTTTCAAT
JMSF047M16+ CCGTCAAGATTTTCAAT
____________________________________________________________
consensus GTCCGAGAAGTTCACCCTCAGTGTTCTACCGCCAAACACTCTTCCGTCAAGATTTTCAAT
. : . : . : . : . : . :
rJMSF015N05- GACAGCATTGCAATCTTCAACACAGCTCATCGTCACGAAAGCAAACCCTCTGCTTTTGCC
rJMSF050J18- GACAGCATTGCAATCTTCAACACAGCTCATCGTCACGAAAGCAAACCCTCTGCTTTTGCC
rJMSF003G13- GACAGCATTGCAATCTTCAACACAGCTCATCGTCACGAAAGCAAACCCTCTGCTTTTGCC
rJMSF044C11- GACAGCATTGCAATCTTCAACACAGCTCATCGTCACGAAAGCAAACCCTCTGCTTTTGCC
rJMSF047M16- GACAGCATTGCAATCTTCAACACAGCTCATCGTCACGAAAGCAAACCCTCTGCTTTTGCC
JMSF015N05+ CC
JMSF044C11+ GACAGCATTGCAATCTTCAACACAGCTCATCGTCACGAAAGCAAACCCTCTGCTTTTGCC
JMSF050J18+ GACAGCATTGCAATCTTCAACACAGCTCATCGTCACGAAAGCAAACCCTCTGCTTTTGCC
JMSF047M16+ GACAGCATTGCAATCTTCAACACAGCTCATCGTCACGAAAGCAAACCCTCTGCTTTTGCC
____________________________________________________________
consensus GACAGCATTGCAATCTTCAACACAGCTCATCGTCACGAAAGCAAACCCTCTGCTTTTGCC
. : . : . : . : . : . :
rJMSF015N05- AGTTTCTCTATCGTACAGAACCTCAACAAGCTCAGGGCTACCATAGTCTTGAACGATCCC
rJMSF050J18- AGTTTCTCTATCGTACAGAACCTCAACAAGCTCAGGGCTACCATAGTCTTGAACGATCCC
rJMSF003G13- AGTTTCTCTATCGTACAGAACCTCAACAAGCTCAGGGCTACCATAGTCTTGAACGATCCC
rJMSF044C11- AGTTTCTCTATCGTACAGAACCTCAACAAGCTCAGGGCTACCATAGTCTTGAACGATCCC
rJMSF047M16- AGTTTCTCTATCGTACAGAACCTCAACAAGCTCAGGGCTACCATAGTCTTGAACGATCCC
JMSF015N05+ AGTTTCTCTATCGTACAGAACCTCAACAAGCTCAGGGCTACCATAGTCTTGAACGATCCC
JMSF044C11+ AGTTTCTCTATCGTACAGAACCTCAACAAGCTCAGGGCTACCATAGTCTTGAACGATCCC
JMSF050J18+ AGTTTCTCTATCGTACAGAACCTCAACAAGCTCAGGGCTACCATAGTCTTGAACGATCCC
JMSF047M16+ AGTTTCTCTATCGTACAGAACCTCAACAAGCTCAGGGCTACCATAGTCTTGAACGATCCC
____________________________________________________________
consensus AGTTTCTCTATCGTACAGAACCTCAACAAGCTCAGGGCTACCATAGTCTTGAACGATCCC
. : . : . : . : . : . :
rJMSF015N05- AGCAAGCTGCGCACTGTCACAATTATACGGCAAATTCCCAAAGTAGAGCTTACAATTCAC
rJMSF050J18- AGCAAGCTGCGCACTGTCACAATTATACGGCAAATTCCCAAAGTAGAGCTTACAATTCAC
rJMSF003G13- AGCAAGCTGCGCACTGTCACAATTATACGGCAAATTCCCAAAGTAGAGCTTACAATTCAC
rJMSF044C11- AGCAAGCTGCGCACTGTCACAATTANACGGCAAATTCCCNAAGTAGAGCTTACAATTCAC
rJMSF047M16- AGCAAGCTGCGCACTGTCACAATTATACGGCAAATTCCCAAAGTAGAGCTTACAATTCAC
JMSF015N05+ AGCAAGCTGCGCACTGTCACAATTATACGGCAAATTCCCAAAGTAGAGCTTACAATTCAC
JMSF044C11+ AGCAAGCTGCGCACTGTCACAATTATACGGCAAATTCCCAAAGTAGAGCTTACAATTCAC
JMSF050J18+ AGCAAGCTGCGCACTGTCACAATTATACGGCAAATTCCCAAAGTAGAGCTTACAATTCAC
JMSF047M16+ AGCAAGCTGCGCACTGTCACAATTATACGGCAAATTCCCAAAGTAGAGCTTACAATTCAC
____________________________________________________________
consensus AGCAAGCTGCGCACTGTCACAATTATACGGCAAATTCCCAAAGTAGAGCTTACAATTCAC
. : . : . : . : . : . :
rJMSF015N05- GCCACTACTCTGATCATCGCCATCGCCGCCGCTTTCCTCCGGCGCGGCCGGCGTCTCCGT
rJMSF050J18- GCCACTACTCTGATCATCGCCATCGCCGCCGCTTTCCTCCGGCGCGGCNGGCGTCTCCGT
rJMSF003G13- GCCACTACTCTGATCATCGCCATCGCCGCCGCTTTCCTCCGGCGCGGCCGGCGTCTCCGT
rJMSF044C11- GCCACTACTCTGATCATCGCCATCGCCGCCGCTTTCCTCCGGCGCGGCCGGCGTCTCCGT
rJMSF047M16- GCCACTACTCTGATCATCGCCATCGCCGCCGCTTTCCTCCGGCGCGGCCGGCGTCTCCGT
JMSF015N05+ GCCACTACTCTGATCATCGCCATCGCCGCCGCTTTCCTCCGGCGCGGCCGGCGTCTCCGT
JMFN028K03+ TCGCCATCGCCGCCGTTTTCCTCCGGGGGGGCCGGTGTGTCCGT
JMSF044C11+ GCCACTACTCTGATCATCGCCATCGCCGCCGCTTTCCTCCGGCGCGGCCGGCGTCTCCGT
JMSF050J18+ GCCACTACTCTGATCATCGCCATCGCCGCCGCTTTCCTCCGGCGCGGCCGGCGTCTCCGT
JMSF003G13+ TCATCGCCATCGCCGCCGCTTTCTTCCGGCGCGGCCGGCGTCTCCGT
JMSF047M16+ GCCACTACTCTGATCATCGCCATCGCCGCCGCTTTCCTCCGGCGCGGCCGGCGTCTCCGT
____________________________________________________________
consensus GCCACTACTCTGATCATCGCCATCGCCGCCGCTTTCCTCCGGCGCGGCCGGCGTCTCCGT
. : . : . : . : . : . :
rJMSF015N05- GACAGCCGCCTCT
rJMSF050J18- GACAGCCGCCTCTT
rJMSF003G13- GACAGCCGCCTCTTCTT
rJMSF044C11- GACAGCCGCCTCTTCTTGCGCCACCGCGGCCGCTAGCCTGTGCACTCTCCATTTGCTG
rJMSF047M16- GACAGCCGCCTCTTCTTGCGCCACCGCGGCCGCTAGCCTGTGCACTCTCCATTTGCTGCT
JMSF015N05+ GACAGCCGCCTCTTCTTGCGCCACCGCGGCCGCTAGCCTGTGCACTCTCCATTTGCTGCT
JMFN028K03+ TCGAGCGGCCTCTTCTTGCGCCACCGCGGCCGCTAGCCTGTGCACTCTCCATTTGGTGTT
JMSF044C11+ GACAGCCGCCTCTTCTTGCGCCACCGCGGCCGCTAGCCTGTGCACTCTCCATTTGCTGCT
JMSF050J18+ GACAGCCGCCTCTTCTTGCGCCACCGCGGCCGCTAGCCTGTGCACTCTCCATTTGCTGCT
JMSF003G13+ GACAGCCGCCTCTTCTTGCGCCACCGCGGCCGCTAGCCTGTGCACTCTCCATTTGCTGCT
JMSF047M16+ GACAGCCGCCTCTTCTTGCGCCACCGCGGCCGCTAGCCTGTGCACTCTCCATTTGCTGCT
____________________________________________________________
consensus GACAGCCGCCTCTTCTTGCGCCACCGCGGCCGCTAGCCTGTGCACTCTCCATTTGCTGCT
. : . : . : . : . : . :
rJMSF047M16- CGTTAACAGGCACGGTTCTATCCCGAGAAAGTGCGATTGCAGCGGCGAC
JMSF015N05+ CGTTAACAGGCACGGTTCTATCCCGAGAAAGTGCGATTGCAGCGGCGACGTTTTGATGGG
JMFN028K03+ TGTTAACAGGCGCGGTTCTATCCCGAGAAAGTGCGAATGCAGCGGCGACGTTTTGATGGG
JMSF044C11+ CGTTAACAGGCACGGTTCTATCCCGAGAAAGTGCGATTGCAGCGGCGACGTTTTGATGGG
JMSF050J18+ CGTTAACAGGCACGGTTCTATCCCGAGAAAGTGCGATTGCAGCGGCGACGTTTTGATGGG
JMSF003G13+ CGTTAACAGGCACGGTTCTATCCCGAGAAAGTGCGATTGCAGCGGCGACGTTTTGATGGG
JMSF047M16+ CGTTAACAGGCACGGTTCTATCCCGAGAAAGTGCGATTGCAGCGGCGACGTTTTGATGGG
____________________________________________________________
consensus CGTTAACAGGCACGGTTCTATCCCGAGAAAGTGCGATTGCAGCGGCGACGTTTTGATGGG
. : . : . : . : . : . :
JMSF015N05+ AATAAGGGTGAGGAGGTGGTCGGAGGCGTGGCGGGTCTTGGGGCGGGTGCATTTTAGGGT
JMFN028K03+ AATAAGGGTGAGAAGGTGGTCGGAGGCGTGGCGGGTCTTGGGGCGGGTGCATTTTAGGGT
JMSF044C11+ AATAAGGGTGAGGAGGTGGTCGGAGGCGTGGCGGGTCTTGGGGCGGGTGCATTTTAGGGT
JMSF050J18+ AATAAGGGTGAGGAGGTGGTCGGAGGCGTGGCGGGTCTTGGGGCGGGTGCATTTTAGGGT
JMSF003G13+ AATAAGGGTGAGGAGGTGGTCGGAGGCGTGGCGGGTCTTGGGGCGGGTGCATTTTAGGGT
JMSF047M16+ AATAAGGGTGAGGAGGTGGTCGGAGGCGTGGCGGGTCTTGGGGCGGGTGCATTTTAGGGT
____________________________________________________________
consensus AATAAGGGTGAGGAGGTGGTCGGAGGCGTGGCGGGTCTTGGGGCGGGTGCATTTTAGGGT
. : . : . : . : . : . :
JMSF015N05+ TTGCATGGAAGTGGAGAAGGAGGAGGCCATGGCGGTGGCTGCCATGTCGCCGGAATATCG
JMFN028K03+ TTGCATGGAAGTGGAGAAGGAGGAGGCCATGGCGGTGGCTGCCATGTCGCCGGAATATCG
JMSF044C11+ TTGCATGGAAGTGGAGAAGGAGGAGGCCATGGCGGTGGCTGCCATGTCGCCGGAATATCG
JMSF050J18+ TTGCATGGAAGTGGAGAAGGAGGAGGCCATGGCGGTGGCTGCCATGTCGCCGGAATATCG
JMSF003G13+ TTGCATGGAAGTGGAGAAGGAGGAGGCCATGGCGGTGGCTGCCATGTCGCCGGAATATCG
JMSF047M16+ TTGCATGGAAGTGGAGAAGGAGGAGGCCATGGCGGTGGCTGCCATGTCGCCGGAATATCG
____________________________________________________________
consensus TTGCATGGAAGTGGAGAAGGAGGAGGCCATGGCGGTGGCTGCCATGTCGCCGGAATATCG
. : . : . : . : . : . :
JMSF015N05+ TTGGTTGATGGGCGGCGGCTCTGTGGTGGTTGTGGATCGGAGTG
JMFN028K03+ TTGGTTGATGGGCGGCGGCTC
JMSF044C11+ TTGGTTGATGGGCGGCGGCTCTGTGGTGGTTGTGGATCGGAGTGATTGAGAGAGATGGT
JMSF050J18+ TTGGTTGATGGGCGGCGGCTCTGTGGTGGTTGTGGATCGGAGTGATTGAGAGAGATGGTG
JMSF003G13+ TTGGTTGATGGGCGGCGGCTCTGTGGTGGTTGTGGATCGGAGTGATTGAGAGAGATGGTG
JMSF047M16+ TTGGTTGATGGGCGGCGGCTCTGTGGTGGTTGTGGATCGGAGTGATTGAGAGAGATGGTG
____________________________________________________________
consensus TTGGTTGATGGGCGGCGGCTCTGTGGTGGTTGTGGATCGGAGTGATTGAGAGAGATGGTG
. : . : . : . : . : . :
JMSF050J18+ CTAACCACCAACC
JMSF003G13+ CTAACCACCAACC
JMSF047M16+ CTAACCACCAACCAGTAACTAGAGTGTGAAGTATGGGGCTATCAGCTATGGCGATTCGTT
____________________________________________________________
consensus CTAACCACCAACCAGTAACTAGAGTGTGAAGTATGGGGCTATCAGCTATGGCGATTCGTT
. : . : . : . : . : . :
JMSF047M16+ TGCTGACGTGGCGAGACCGTGGCCAATGAGATCGCGGAGGATAGACGACGACGACGGATC
____________________________________________________________
consensus TGCTGACGTGGCGAGACCGTGGCCAATGAGATCGCGGAGGATAGACGACGACGACGGATC