clone | seq. | 5'-sequence | 3'-sequence | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
JMFF012E17 | Sequence | 544 | 006024 (10) | ref|XP_006343948.1| | 1e-87 | PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Solanum tuberosum] | 597 | 006024 (10) | ref|XP_006343948.1| | 3e-57 | PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Solanum tuberosum] |
JMFF034K16 | Sequence | 556 | 006024 (10) | ref|XP_006343948.1| | 1e-90 | PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Solanum tuberosum] | 462 | 006024 (10) | ref|XP_009800798.1| | 3e-43 | PREDICTED: E3 ubiquitin-protein ligase RHA1B [Nicotiana sylvestris] |
JMFF046C05 | Sequence | 624 | 006024 (10) | ref|XP_006343948.1| | 1e-100 | PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Solanum tuberosum] | 501 | 006024 (10) | ref|XP_004245579.1| | 4e-54 | PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Solanum lycopersicum] |
JMFN004P09 | Sequence | 627 | 006024 (10) | ref|XP_009800798.1| | 3e-101 | PREDICTED: E3 ubiquitin-protein ligase RHA1B [Nicotiana sylvestris] | |||||
JMFN016L10 | Sequence | 569 | 006024 (10) | ref|XP_006343948.1| | 2e-99 | PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Solanum tuberosum] | |||||
JMSF030H17 | Sequence | 641 | 006024 (10) | ref|XP_009800798.1| | 2e-101 | PREDICTED: E3 ubiquitin-protein ligase RHA1B [Nicotiana sylvestris] | 343 | 006024 (10) | ref|XP_004245579.1| | 6e-14 | PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Solanum lycopersicum] |
Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.
SCORE============================================Contig006024============================================ 840 9 ------------------------------------------------------------------------->JMFF046C05 <-----------------------------------------------------------rJMFF046C05 77 ----------------------------------------------------------------->JMFF034K16 <------------------------------------------------------rJMFF034K16 87 --------------------------------------------------------------------------->JMSF030H17 <-----------------------------------rJMSF030H17 313 --------------------------------------------------------------->JMFF012E17 <------------------------------------------rJMFF012E17
The following clones don't have the opposite end in this pair.
------------------------------------------------------------------------->JMFN004P09- ------------------------------------------------------------------->JMFN016L10-