Contig 006024:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF012E17Sequence544006024 (10)ref|XP_006343948.1|1e-87PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Solanum tuberosum]597006024 (10)ref|XP_006343948.1|3e-57PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Solanum tuberosum]
JMFF034K16Sequence556006024 (10)ref|XP_006343948.1|1e-90PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Solanum tuberosum]462006024 (10)ref|XP_009800798.1|3e-43PREDICTED: E3 ubiquitin-protein ligase RHA1B [Nicotiana sylvestris]
JMFF046C05Sequence624006024 (10)ref|XP_006343948.1|1e-100PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Solanum tuberosum]501006024 (10)ref|XP_004245579.1|4e-54PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Solanum lycopersicum]
JMFN004P09Sequence627006024 (10)ref|XP_009800798.1|3e-101PREDICTED: E3 ubiquitin-protein ligase RHA1B [Nicotiana sylvestris]
JMFN016L10Sequence569006024 (10)ref|XP_006343948.1|2e-99PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Solanum tuberosum]
JMSF030H17Sequence641006024 (10)ref|XP_009800798.1|2e-101PREDICTED: E3 ubiquitin-protein ligase RHA1B [Nicotiana sylvestris]343006024 (10)ref|XP_004245579.1|6e-14PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Solanum lycopersicum]

Alignment

This contig is upended


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rJMFF046C05-          GTTTAAATAACATTTTTTGGATCAAATTTAATTTAAGCATGGAAAACCTTTAGAAAAAAA
                      ____________________________________________________________
consensus             GTTTAAATAACATTTTTTGGATCAAATTTAATTTAAGCATGGAAAACCTTTAGAAAAAAA
 
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rJMSF030H17-                                    AAATTGACAACTACAACTATACATATTGCAAGTC
rJMFF046C05-          TTATGGATTTCATTAAGAGGCTCACAAAATTGACAACTACAACTATACATATTGCAAGTC
rJMFF034K16-                           AGGCTCACAAAATTGACAACTACAACTATACATATTGCAAGTC
                      ____________________________________________________________
consensus             TTATGGATTTCATTAAGAGGCTCACAAAATTGACAACTACAACTATACATATTGCAAGTC
 
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rJMSF030H17-          TTTCTTCTCTCATCTCGGCCCCCTTTTTTTTTTNGGNCCCTTTTCTTTTANGGGGNAAAG
rJMFF046C05-          TTTCTTCTCTCATCTCGGCCCCCTTTTTTTTTT-GGTCCCTTTTCTTTTAAGGGGTAAAT
rJMFF034K16-          TTTCTTCTCTCATCTCGGCCCCCTTTTTTTTTT-GGTCCCTTTTCTTTTAAGGGGNAAAT
                      ____________________________________________________________
consensus             TTTCTTCTCTCATCTCGGCCCCCTTTTTTTTTT-GGTCCCTTTTCTTTTAAGGGGTAAAT
 
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rJMSF030H17-          GGGTAANATATACTTTTTACGGANAGTAAAANCCNAAANATAAACNNGGNGGNGGCNACA
rJMFF046C05-          GGGTAATATATACATTTTACGGAGAGTAAAAGCCGAAAGATAAACATGGCGGCGGCTACA
rJMFF034K16-          GGGTAATATATACNTTTTACGGANAGTAAAAGCCNAAANATAAACNTGGNGGNGGNTACA
JMFN004P09+                          TTTACGGAGAGTAAAAGCCGAAAGATAAACATGGCGNCGGCTACA
JMFF046C05+                                       AAAGCCGAAAGATAAACATGGCGGCGGCTACA
JMSF030H17+                             ACGGAGAGTAAAAGCCGAAAGATAAACATGGCGGCGGCTACA
                      ____________________________________________________________
consensus             GGGTAATATATACTTTTTACGGAGAGTAAAAGCCGAAAGATAAACATGGCGGCGGCTACA
 
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rJMSF030H17-          AACCGGCNGAAATCGGCAAGNACTCNCCGNAAAANTCGNAAATCCCGNAANCCAACCAAA
rJMFF046C05-          AACCGGCTGAAATCGGCGAGTACTCGCCGTAGAAATCGGAAATCCCGGAAGCCAACCAGA
rJMFF034K16-          AACCGGNTGAAATCGGCNAGNACTCNCCGNAAAAATCGNAAATCCCGGAAGCCAACCAAA
JMFN004P09+           AACCGGCTGAAATCGGCGAGTACTCGCCGTAGAAATCGGAAATCCCGGAAGCCAACCAGA
JMFF046C05+           AACCGGCTGAAATCGGCGAGTACTCGCCGTAGAAATCGGAAATTCCGGAAGCCAACCAGA
JMFN016L10+                  TGAAATCGGCGAGTACTCGCCGTAGAAATCGGAAATCCCGGAAGCCAACCAGA
JMSF030H17+           AACCGGCTGAAATCGGCGAGTACTCGCCGTAGAAATCGGAAATCCCGGAAGCCAACCAGA
JMFF012E17+                                                                 ACCAGA
JMFF034K16+                                                      CCCGGAAGCCAACCAGA
                      ____________________________________________________________
consensus             AACCGGCTGAAATCGGCGAGTACTCGCCGTAGAAATCGGAAATCCCGGAAGCCAACCAGA
 
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rJMSF030H17-          GGNGTTCNTTGAANCTCTCCNGCATATCCNCCGGTATAAACGGCGTCCGGNAAAGNGGGN
rJMFF046C05-          GGCGTTCATTGAAGCTCTCCTGCATATCCTCCGGTATAAACGGCGTCCGGCAGAGCGGGC
rJMFF034K16-          GGCGTTCNTTGAAGCTCTCCTGCATATCCTCCGGNATAAACGGCGTCCGGCAAAGCGGGC
JMFN004P09+           GGCGTTCATTGAAGCTCTCCTGCATATCCTCCGGTATAAACGGCGTCCGGCAGAGCGGGC
rJMFF012E17-               TCATTGAAGCTCTCCTGCATATCCTCCGGNATAAACGGCGTCCGGCAAAGCGGGC
JMFF046C05+           GGCGTTCATTGAAGCTCTCCTGCATATCCTCCGGTATAAACGGCGTCCGGCAGAGCGGGC
JMFN016L10+           GGCGTTCATTGAAGCTCTCCTGCATATCCTCCGGTATAAACGGCGTCCGGCAGAGCGGGC
JMSF030H17+           GGCGTTCATTGAAGCTCTCCTGCATATCCTCCGGTATAAACGGCGTCCGGCAGAGCGGGC
JMFF012E17+           GGCGTTCATTGAAGCTCTCCTGCATATCCTCCGGTATAAACGGCGTCCGGCAGAGCGGGC
JMFF034K16+           GGCGTTCATTGAAGCTCTCCTGCATATCCTCCGGTATAAACGGCGTCCGGCAGAGCGGGC
                      ____________________________________________________________
consensus             GGCGTTCATTGAAGCTCTCCTGCATATCCTCCGGTATAAACGGCGTCCGGCAGAGCGGGC
 
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rJMSF030H17-          AGGTCTTCNGGTCGGGGNCCATCCAA                                  
rJMFF046C05-          AGGTCTTCTGGTCGTGGTCCATCCAACGGTCGAGGCAGCTCCGGTGGAATATGTGGCGGC
rJMFF034K16-          AGGNCTTCTGGTCGNGGNCCATCCAACGGNCNAGGCANCTCCGGGGGAATATGNGGNGGC
JMFN004P09+           AGGTCTTCTGGTCGTGGTCCATCCAACGGTCGAGGCAGCTCCGGTGGAATATGTGGCGGC
rJMFF012E17-          AGGTCTTCTGGTCGNGGNCCATCCAACGGTCNAGGCANCTCCGGNGGAATATGNGGCGGC
JMFF046C05+           AGGTCTTCTGGTCGTGGTCCATCCAACGGTCGAGGCAGCTCCGGTGGAATATGTGGCGGC
JMFN016L10+           AGGTCTTCTGGTCGTGGTCCATCCAACGGTCGAGGCAGCTCCGGTGGAATATGTGGCGGC
JMSF030H17+           AGGTCTTCTGGTCGTGGTCCATCCAACGGTCGAGGCAGCTCCGGTGGAATATGTGGCGGC
JMFF012E17+           AGGTCTTCTGGTCGTGGTCCATCCAACGGTCGAGGCAGCTCCGGTGGAATATGTGGCGGC
JMFF034K16+           AGGTCTTCTGGTCGTGGTCCATCCAACGGTCGAGGCAGCTCCGGTGGAATATGTGGCGGC
                      ____________________________________________________________
consensus             AGGTCTTCTGGTCGTGGTCCATCCAACGGTCGAGGCAGCTCCGGTGGAATATGTGGCGGC
 
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rJMFF046C05-          AATTCGTGAGTCGTCGGATCTCGTCGTCCCTGTCGAACTCGTACAAGCAGACGGCGCAGC
rJMFF034K16-          AATTCGNGAGTCGTCGGATCTCGTCGTCCCTGTCAAACTCGNACAAGCAAACGGCGCAGN
JMFN004P09+           AATTCGTGAGTCGTCGGATCTCGTCGTCCCTGTCGAACTCGTACAAGCAGACGGCGCAGC
rJMFF012E17-          AATTCGNGAGTCGTCGGATCTCGTCGTCCCTGTCNAACTCGNACAAGCAAACGGCGCAGC
JMFF046C05+           AATTCGTGAGTCGTCGGATCTCGTCGTCCCTGTCGAACTCGTACAAGCAGACGGCGCAGC
JMFN016L10+           AATTCGTGAGTCGTCGGATCTCGTCGTCCCTGTCGAACTCGTACAAGCAGACGGCGCAGC
JMSF030H17+           AATTCGTGAGTCGTCGGATCTCGTCGTCCCTGTCGAACTCGTACAAGCAGACGGCGCAGC
JMFF012E17+           AATTCGTGAGTCGTCGGATCTCGTCGTCCCTGTCGAACTCGTACAAGCAGACGGCGCAGC
JMFF034K16+           AATTCGTGAGTCGTCGGATCTCGTCGTCCCTGTCGAACTCGTACAAGCAGACGGCGCAGC
                      ____________________________________________________________
consensus             AATTCGTGAGTCGTCGGATCTCGTCGTCCCTGTCGAACTCGTACAAGCAGACGGCGCAGC
 
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rJMFF046C05-          TCTCCGGCGGGTCCGCCAGCTC                                      
rJMFF034K16-          TCTCCGGNGGGTCCNCCAGCTCCAAAAATTTCACCNCCGGCAGGAGCTCCCGGATCAGGG
JMFN004P09+           TCTCCGGCGGGTCCGCCAGCTCCGAGAATTTCACCACCGGCAGGAGCTCCCGGATCAGGG
rJMFF012E17-          TCTCCGGNGGGTCCGCCAGCTCCNAAAATTTCACCACCGGCAGGAGCTCCCGGATCAGGG
JMFF046C05+           TCTCCGGCGGGTCCGCCAGCTCCGAGAATTTCACCACCGGCAGGAGCTCCCGGATCAGGG
JMFN016L10+           TCTCCGGCGGGTCCGCCAGCTCCGAGAATTTCACCACCGGCAGGAGCTCCCGGATCAGGG
JMSF030H17+           TCTCCGGCGGGTCCGCCAGCTCCGAGAATTTCACCACCGGCAGGAGCTCCCGGATCAGGG
JMFF012E17+           TCTCCGGCGGGTCCGCCAGCTCCGAGAATTTCACCACCGGCAGGAGCTCCCGGATCAGGG
JMFF034K16+           TCTCCGGCGGGTCCGCCAGCTCCGAGAATTTCACCACCGGCAGGAGCTCCCGGATCAGGG
                      ____________________________________________________________
consensus             TCTCCGGCGGGTCCGCCAGCTCCGAGAATTTCACCACCGGCAGGAGCTCCCGGATCAGGG
 
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JMFN004P09+           TAGCCGACACGGAGTGGAGCTCCGACCCGGTTTCCACCCGGTTGTGGAACGCCATTTCCG
rJMFF012E17-          NANCCNACACGGAGNGGAGCTCCNACCCGGTTTCCACCCGGTTGTGGAACGCCATTTCCG
JMFF046C05+           TAGCCGACACGGAGTGGAGCTCCGACCCGGTTTCCACCCGGTTGTGGAACGCCATTTCCG
JMFN016L10+           TAGCCGACACGGAGTGGAGCTCCGACCCGGTTTCCACCCGGTTGTGGAACGCCATTTCCG
JMSF030H17+           TAGCCGACACGGAGTGGAGCTCCGACCCGGTTTCCACCCGGTTGTGGAACGCCATTTCCG
JMFF012E17+           TAGCCGACACGGAGTGGAGCTCCGACCCGGTTTCCACCCGGTTGTGGAACGCCATTTCCG
JMFF034K16+           TAGCCGACACGGAGTGGAGCTCCGACCCGGTTTCCACCCGGTTGTGGAACGCCATTTCCG
                      ____________________________________________________________
consensus             TAGCCGACACGGAGTGGAGCTCCGACCCGGTTTCCACCCGGTTGTGGAACGCCATTTCCG
 
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JMFN004P09+           GCTCCAGGAAATCCCCGAGACCCACGACGCTGAAAATGAAGCAAATACATGTTCTGATGA
rJMFF012E17-          GNTCCAGGAAATCCCCNANACCCACNACGCTGAAAATGAAGCAAATACNTGTTCTGATGA
JMFF046C05+           GCTCCAGGAAATCCCCGAGACCCACGACGCTGAAAATGAAGCAAATACATGTTCTGATGA
JMFN016L10+           GCTCCAGGAAATCCCCGAGACCCACGACGCTGAAAATGAAGCAAATACATGTTCTGATGA
JMSF030H17+           GCTCCAGGAAATCCCCGAGACCCACGACGCTGAAAATGAAGCAAATACATGTTCTGATGA
JMFF012E17+           GCTCCAGGAAATCCCCGAGACCCACGACGCTGAAAATGAAGCAAATACATGTTCTGATGA
JMFF034K16+           GCTCCAGGAAATCCCCGAGACCCACGACGCTGAAAATGAAGCAAATACATGTTCTGATGA
                      ____________________________________________________________
consensus             GCTCCAGGAAATCCCCGAGACCCACGACGCTGAAAATGAAGCAAATACATGTTCTGATGA
 
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JMFN004P09+           AACCCAAGACGGTGAAGACGTGAACCAGCATCTTGGGGAGAAAAAGATCCGTGTAACCCA
rJMFF012E17-          AA                                                          
JMFF046C05+           AACCCAAGACGGTGAAGACGTGAACCAGCATCTTGGGGAGAAAAAGATCCGTGTAACCCA
JMFN016L10+           AACCCAAGACGGTGAAGACGTGAACCAGCATCTTGGGGAGAAAAAGATCCGTGTAACCCA
JMSF030H17+           AACCCAAGACGGTGAAGACGTGAACCAGCATCTTGGGGAGAAAAAGATCCGTGTAACCCA
JMFF012E17+           AACCCAAGACGGTGAAGACGTGAACCAGCATCTTGGGGAGAAAAAGATCCGTGTAACCCA
JMFF034K16+           AACCCAAGACGGTGAAGACGTGAACCAGCATCTTGGGGAGAAAAAGATCCGTGTAACCCA
                      ____________________________________________________________
consensus             AACCCAAGACGGTGAAGACGTGAACCAGCATCTTGGGGAGAAAAAGATCCGTGTAACCCA
 
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JMFN004P09+           CCGGAAAACCCATATCGTCGGCCGGCCTGAAGCTGCTCCTAATTACGGCGTCGTTTCTGA
JMFF046C05+           CCGGAAAACCCATATCGTCGGCCGGCCTGAAGCTGCTCCTAATTACGGCGTCGTTTCTGA
JMFN016L10+           CCGGAAAACCCATATCGTCGGCCGGCCTGAAGCTGCTCCTAATTACGGCGTCGTTTCTGA
JMSF030H17+           CCGGAAAACCCATATCGTCGGCCGGCCTGAAGCTGCTCCTAATTACGGCGTCGTTTCTGA
JMFF012E17+           CCGGAAAACCCATATCGTCGGCCGGCCTGAAGCTGCTCCTAATTACGGCGTCGTTTCTGA
JMFF034K16+           CCGGAAAACCCATATCGTCGGCCGGCCTGAAGCTGCTCCTAATTACGGCGTCGTTTCTGA
                      ____________________________________________________________
consensus             CCGGAAAACCCATATCGTCGGCCGGCCTGAAGCTGCTCCTAATTACGGCGTCGTTTCTGA
 
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JMFN004P09+           GCCGCGAGAGTGAAAATT-TTACACGAGTGAGAGTTA                       
JMFF046C05+           GCCGCGAGAGTGAAAATTGTTACACGAGTGAGAGTTAGTTGGATGTCTGAGT        
JMFN016L10+           GCCGCGAGAGTGAAAATT-TTACACGAGTGAGAGTTA                       
JMSF030H17+           GCCGCGAGAGTGAAAATT-TTACACGAGTGAGAGTTAGTTGGATGTCTGAGTAGAAAGC 
JMFF012E17+           GCCGCGAGAGTGAAAATT-TTACACGAGTGAGAGTTAGTTGGATGTCTGAGT        
JMFF034K16+           GCCGCGAGAGTGAAAATT-TTACACGAGTGAGAGTTAGTTGGATGTCTGAGTAGAAAGCG
                      ____________________________________________________________
consensus             GCCGCGAGAGTGAAAATT-TTACACGAGTGAGAGTTAGTTGGATGTCTGAGTAGAAAGCG