clone | seq. | 5'-sequence | 3'-sequence | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
JMFF015O10 | Sequence | 508 | 006662 (11) | emb|CDP05070.1| | 8e-22 | unnamed protein product [Coffea canephora] | 740 | 006662 (11) | ref|XP_011075994.1| | 8e-102 | PREDICTED: protein BOBBER 1 [Sesamum indicum] |
JMFF028P21 | Sequence | 516 | 006662 (11) | emb|CDP05070.1| | 2e-23 | unnamed protein product [Coffea canephora] | 349 | 006662 (11) | ref|XP_004234959.1| | 5e-33 | PREDICTED: protein BOBBER 1 [Solanum lycopersicum] |
JMFF030M24 | Sequence | 437 | 006662 (11) | ref|XP_009601406.1| | 2e-17 | PREDICTED: protein BOBBER 1-like [Nicotiana tomentosiformis] | 730 | 006662 (11) | ref|XP_011075994.1| | 4e-91 | PREDICTED: protein BOBBER 1 [Sesamum indicum] |
JMFF035F13 | Sequence | 606 | 006662 (11) | emb|CDP05070.1| | 8e-43 | unnamed protein product [Coffea canephora] | 692 | 006662 (11) | ref|XP_011075994.1| | 4e-92 | PREDICTED: protein BOBBER 1 [Sesamum indicum] |
JMFN005D19 | Sequence | 585 | 006662 (11) | emb|CDP05070.1| | 4e-32 | unnamed protein product [Coffea canephora] | |||||
JMSF041H12 | Sequence | 746 | 006662 (11) | ref|XP_009601406.1| | 5e-59 | PREDICTED: protein BOBBER 1-like [Nicotiana tomentosiformis] | 716 | 006662 (11) | ref|XP_011075994.1| | 6e-105 | PREDICTED: protein BOBBER 1 [Sesamum indicum] |
Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.
SCORE============================================Contig006662============================================1285 63 --------------------------------------------------------->JMSF041H12 <-----------------------------------------------------rJMSF041H12 68 --------------------------------->JMFF030M24 <--------------------------------------------------------rJMFF030M24 79 --------------------------------------->JMFF015O10 <---------------------------------------------------------rJMFF015O10 79 ---------------------------------------------->JMFF035F13 <-----------------------------------------------------rJMFF035F13 168 --------------------------------------->JMFF028P21 <--------------------------rJMFF028P21
The following clones don't have the opposite end in this pair.
--------------------------------------------->JMFN005D19-