clone | seq. | 5'-sequence | 3'-sequence | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
JMFF002H14 | Sequence | 534 | 002634 (10) | ref|XP_004146887.1| | 6e-93 | PREDICTED: 60S ribosomal protein L13-2-like isoform 1 [Cucumis sativus] ref|XP_ | 760 | 002634 (10) | ref|XP_011084605.1| | 1e-103 | PREDICTED: 60S ribosomal protein L13-1 [Sesamum indicum] |
JMFF020J09 | Sequence | 533 | 002634 (10) | ref|XP_011084605.1| | 5e-91 | PREDICTED: 60S ribosomal protein L13-1 [Sesamum indicum] | 738 | 002634 (10) | ref|XP_011084605.1| | 6e-104 | PREDICTED: 60S ribosomal protein L13-1 [Sesamum indicum] |
JMFF035D10 | Sequence | 370 | 002634 (10) | ref|XP_007158142.1| | 2e-54 | hypothetical protein PHAVU_002G127900g [Phaseolus vulgaris] gb|ESW30136.1| hypot | 641 | 002634 (10) | ref|XP_011084605.1| | 2e-58 | PREDICTED: 60S ribosomal protein L13-1 [Sesamum indicum] |
JMFF041H11 | Sequence | 648 | 002634 (10) | ref|XP_004146887.1| | 2e-116 | PREDICTED: 60S ribosomal protein L13-2-like isoform 1 [Cucumis sativus] ref|XP_ | 631 | 002634 (10) | ref|XP_011084605.1| | 7e-86 | PREDICTED: 60S ribosomal protein L13-1 [Sesamum indicum] |
Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.
SCORE============================================Contig002634============================================ 947 1 -------------------------------------->JMFF035D10 <-------------------------------------------------------------------rJMFF035D10 131 ------------------------------------------------------------------->JMFF041H11 <-----------------------------------------------------------------rJMFF041H11 153 ------------------------------------------------------->JMFF002H14 <-------------------------------------------------------------------------------rJMFF002H14 174 ------------------------------------------------->JMFF020J09 <-----------------------------------------------------------------------------rJMFF020J09
The following clones don't have the opposite end in this pair.
<----------------------------------------------------------------------------rJMSF027C12* <---------------rJMSF023C20*