| clone | seq. | 5'-sequence | 3'-sequence | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
| JMFF028D12 | Sequence | 502 | 002756 (17) | ref|XP_011100338.1| | 6e-37 | PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Sesamum indicum] | 663 | 002756 (17) | gb|ABV24460.1| | 1e-29 | chloroplast-localized protein [Nicotiana benthamiana] |
| JMFF047F04 | Sequence | 583 | 002756 (17) | ref|XP_011100338.1| | 2e-65 | PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Sesamum indicum] | 437 | 002756 (17) | ref|XP_009774759.1| | 2e-17 | PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Nicotiana sylvestris] |
| JMFS121C06 | Sequence | 573 | 002756 (17) | ref|XP_011100338.1| | 6e-57 | PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Sesamum indicum] | |||||
| JMSF003K12 | Sequence | 340 | 002756 (17) | gb|EYU26097.1| | 8e-22 | hypothetical protein MIMGU_mgv1a011040mg [Erythranthe guttata] | 777 | 002756 (17) | gb|ABV24460.1| | 2e-96 | chloroplast-localized protein [Nicotiana benthamiana] |
| JMSF009O09 | Sequence | 252 | 002756 (17) | 710 | 002756 (17) | ref|XP_009774759.1| | 1e-84 | PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Nicotiana sylvestris] | |||
| JMSF011O14 | Sequence | 744 | 002756 (17) | gb|ABV24460.1| | 8e-93 | chloroplast-localized protein [Nicotiana benthamiana] | |||||
| JMSF012H22 | Sequence | 719 | 002756 (17) | gb|ABV24460.1| | 4e-83 | chloroplast-localized protein [Nicotiana benthamiana] | |||||
| JMSF024P19 | Sequence | 651 | 002756 (17) | ref|NP_001275338.1| | 3e-82 | protein THYLAKOID FORMATION1, chloroplastic [Solanum tuberosum] sp|Q7XAB8.1|THF1 | 721 | 002756 (17) | ref|XP_009774759.1| | 2e-98 | PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Nicotiana sylvestris] |
| JMSF025P19 | Sequence | 598 | 002756 (17) | ref|NP_001275338.1| | 1e-80 | protein THYLAKOID FORMATION1, chloroplastic [Solanum tuberosum] sp|Q7XAB8.1|THF1 | 666 | 002756 (17) | gb|ABV24460.1| | 8e-85 | chloroplast-localized protein [Nicotiana benthamiana] |
| JMSF050I23 | Sequence | 651 | 002756 (17) | ref|XP_011100338.1| | 4e-92 | PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Sesamum indicum] | 765 | 002756 (17) | ref|XP_009774759.1| | 4e-108 | PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Nicotiana sylvestris] |
Explanatory notes: "*" The opposite end is in another contig. "**" The opposite end is in same contig. "#" The opposite end is singlet. "-" The opposite end has no seqence.
SCORE============================================Contig002756============================================1307 29 ------------------------------------->JMFF028D12 <--------------------------------rJMFF028D12 50 ------------------------------------------->JMFF047F04 <--------------------------------rJMFF047F04 97 ------------------------->JMSF003K12 <-----------------------------------------------------------rJMSF003K12 106 ------------------>JMSF009O09 <-----------------------------------------------------rJMSF009O09 159 --------------------------------------------->JMSF025P19 <--------------------------------------------------rJMSF025P19 159 ------------------------------------------------->JMSF024P19 <------------------------------------------------------rJMSF024P19 159 ------------------------------------------------->JMSF050I23 <----------------------------------------------------------rJMSF050I23
The following clones don't have the opposite end in this pair.
<-------------------------------------------------------rJMSF012H22- <--------------------------------------------------------rJMSF011O14- ------------------------------------------->JMFS121C06-