clone | seq. | 5'-sequence | 3'-sequence | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
JMCP016F11 | Sequence | 451 | 000890 (8) | ref|NP_001031298.1| | 5e-34 | ubiquitin-conjugating enzyme E2 35 [Arabidopsis thaliana] gb|AEE36166.1| ubiquit | |||||
JMFN007I13 | Sequence | 610 | 000890 (8) | ref|XP_006370167.1| | 2e-103 | ubiquitin-conjugating enzyme family protein [Populus trichocarpa] ref|XP_0100606 | |||||
JMFN014F11 | Sequence | 626 | 000890 (8) | ref|XP_006370167.1| | 3e-106 | ubiquitin-conjugating enzyme family protein [Populus trichocarpa] ref|XP_0100606 | |||||
JMFN043P01 | Sequence | 640 | 000890 (8) | emb|CDY40025.1| | 2e-96 | BnaC05g12900D [Brassica napus] | |||||
JMSF038L10 | Sequence | 657 | 000890 (8) | ref|XP_006370167.1| | 3e-106 | ubiquitin-conjugating enzyme family protein [Populus trichocarpa] ref|XP_0100606 | 718 | 000890 (8) | ref|XP_006370167.1| | 5e-106 | ubiquitin-conjugating enzyme family protein [Populus trichocarpa] ref|XP_0100606 |
JMSF045F19 | Sequence | 752 | 000890 (8) | ref|XP_007021721.1| | 2e-105 | Ubiquitin-conjugating enzyme 36 isoform 1 [Theobroma cacao] gb|EOY13246.1| Ubiqu | 684 | 000890 (8) | ref|XP_006370167.1| | 8e-106 | ubiquitin-conjugating enzyme family protein [Populus trichocarpa] ref|XP_0100606 |
Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.
SCORE============================================Contig000890============================================ 718 1 ------------------------------------------------------------------------------------------->JMSF038L10 <--------------------------------------------------------------------------------------------------rJMSF038L10 197 ------------------------------------------------------------------------>JMSF045F19 <----------------------------------------------------------------------rJMSF045F19
The following clones don't have the opposite end in this pair.
------------------------>rJMCP016F11- --------------------------------------------------------------------------->JMFN043P01- ----------------------------------------------------------------------------------->JMFN007I13- -------------------------------------------------------------------------------------->JMFN014F11-