| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMCP016F11 | Sequence | 451 | 000890 (8) | ref|NP_001031298.1| | 5e-34 | ubiquitin-conjugating enzyme E2 35 [Arabidopsis thaliana] gb|AEE36166.1| ubiquit | |||||
| JMFN007I13 | Sequence | 610 | 000890 (8) | ref|XP_006370167.1| | 2e-103 | ubiquitin-conjugating enzyme family protein [Populus trichocarpa] ref|XP_0100606 | |||||
| JMFN014F11 | Sequence | 626 | 000890 (8) | ref|XP_006370167.1| | 3e-106 | ubiquitin-conjugating enzyme family protein [Populus trichocarpa] ref|XP_0100606 | |||||
| JMFN043P01 | Sequence | 640 | 000890 (8) | emb|CDY40025.1| | 2e-96 | BnaC05g12900D [Brassica napus] | |||||
| JMSF038L10 | Sequence | 657 | 000890 (8) | ref|XP_006370167.1| | 3e-106 | ubiquitin-conjugating enzyme family protein [Populus trichocarpa] ref|XP_0100606 | 718 | 000890 (8) | ref|XP_006370167.1| | 5e-106 | ubiquitin-conjugating enzyme family protein [Populus trichocarpa] ref|XP_0100606 |
| JMSF045F19 | Sequence | 752 | 000890 (8) | ref|XP_007021721.1| | 2e-105 | Ubiquitin-conjugating enzyme 36 isoform 1 [Theobroma cacao] gb|EOY13246.1| Ubiqu | 684 | 000890 (8) | ref|XP_006370167.1| | 8e-106 | ubiquitin-conjugating enzyme family protein [Populus trichocarpa] ref|XP_0100606 |
This contig is upended
. : . : . : . : . : . :
JMFN007I13+ AGGAAACAATTATCCTGTTGTAGCCAGGATGAACATATATATATTC
rJMSF038L10- ACTTCTTCAGGCAGGAAACAATTATCCTGTTGTAGCCAGGATGAACATATATATATTC
____________________________________________________________
consensus ACTTCTTCAGGCAGGAAACAATTATCCTGTTGTAGCCAGGATGAACATATATATATTC
. : . : . : . : . : . :
JMFN007I13+ CAATTTGAACCAAGCATCCTTGGCAACATTTAATCAGACACTTGATATAATACATCGCAC
JMFN043P01+ ACATTTAATCAGACACTGNATATAATACATCGCAC
rJMSF038L10- CAATTTGAACCAAGCATCCTTGGCAACATTTAATCAGACACTTGATATAATACATCGCAC
JMFN014F11+ ATTTAATCAGACACTTGATATAATACATCGCAC
JMSF038L10+ TTTGAACCAAGCATCCTTGGCAACATTTAATCAGACACTTGATATAATACATCGCAC
____________________________________________________________
consensus CAATTTGAACCAAGCATCCTTGGCAACATTTAATCAGACACTTGATATAATACATCGCAC
. : . : . : . : . : . :
JMFN007I13+ ATTTTGTTATTTATCGCACGCACCATTTCCACTTCAACAAACTTCAGGCACCGCTAGCAT
JMFN043P01+ ATT-TGTTATTTATCGCACGCACCATTTCCACTTCAACAAACTTCAGGCACCGCTAGCAT
rJMSF038L10- ATTTTGTTATTTATCGCACGCACCATTTCCACTTCAACAAACTTCAGGCACCGCTAGCAT
JMFN014F11+ ATTNTGTTATTTATCGCACGCACCATTTCCACTTCAACAAACTTCAGGCACCGCTAGCAT
JMSF045F19+ TTCAGGCACCGCTAGCAT
rJMSF045F19- TTCAGGCACCGCTAGCAT
JMSF038L10+ ATTTTGTTATTTATCGCACGCACCATTTCCACTTCAACAAACTTCAGGCACCGCTAGCAT
____________________________________________________________
consensus ATTTTGTTATTTATCGCACGCACCATTTCCACTTCAACAAACTTCAGGCACCGCTAGCAT
. : . : . : . : . : . :
JMFN007I13+ ACAGGCGCGTCCATTCCTTTGCTGTTTCAACAGCTTCGACCTCATTTGTCTTCCAATGCT
JMFN043P01+ ACAGGCGCGTCCATTCCTNTGCTGTTTCAACAGCTTCGACCTCATTTGTCTTCCAATGCT
rJMSF038L10- ACAGGCGCGTCCATTCCTTTGCTGTTTCAACAGCTTCGACCTCATTTGTCTTCCAATGCT
JMFN014F11+ ACAGGCGCGTCCATTCCTTTGCTGTTTCAACAGCTTCGACCTCATTTGTCTTCCAATGCT
JMSF045F19+ ACAGGCGCGTCCATTCCTTTGCTGTTTCAACAGCTTCGACCTCATTTGTCTTCCAATGCT
rJMSF045F19- ACAGGCGCGTCCATTCCTTTGCTGTTTCAACAGCTTCGACCTCATTTGTCTTCCAATGCT
JMSF038L10+ ACAGGCGCGTCCATTCCTTTGCTGTTTCAACAGCTTCGACCTCATTTGTCTTCCAATGCT
____________________________________________________________
consensus ACAGGCGCGTCCATTCCTTTGCTGTTTCAACAGCTTCGACCTCATTTGTCTTCCAATGCT
. : . : . : . : . : . :
rJMCP016F11+ C
JMFN007I13+ TCGCGATGTTTTCAGATAGCGGGTCATCTGGATTTGGAGCACTTAAAAGTGCTTGAATAC
JMFN043P01+ TCGCGATGTTTTCAGATAGCGGGTCATCTGGATTTGGAGCACTTAAAAGTGCTTGAATAC
rJMSF038L10- TCGCGATGTTTTCAGATAGCGGGTCATCTGGATTTGGAGCACTTAAAAGTGCTTGAATAC
JMFN014F11+ TCGCGATGTTTTCAGATAGCGGGTCATCTGGATTTGGAGCACTTAAAAGTGCTTGAATAC
JMSF045F19+ TCGCGATGTTTTCAGATAGCGGGTCATCTGGATTTGGAGCACTTAAAAGTGCTTGAATAC
rJMSF045F19- TCGCGATGTTTTCAGATAGCGGGTCATCTGGATTTGGAGCACTTAAAAGTGCTTGAATAC
JMSF038L10+ TCGCGATGTTTTCAGATAGCGGGTCATCTGGATTTGGAGCACTTAAAAGTGCTTGAATAC
____________________________________________________________
consensus TCGCGATGTTTTCAGATAGCGGGTCATCTGGATTTGGAGCACTTAAAAGTGCTTGAATAC
. : . : . : . : . : . :
rJMCP016F11+ TCAAAAGCACAGTACGTATCTGAAGAGCAGGACTCCATTTGTCTTTAAGAATATCAAGAC
JMFN007I13+ TCAAAAGCACAGTACGTATCTGAAGAGCAGGACTCCATTTGTCTTTAAGAATATCAAGAC
JMFN043P01+ TCAAAAGCACAGTACGTATCTGAAGAGCAGGACTCCATTTGTCTTTAAGAATATCAAGAC
rJMSF038L10- TCAAAAGCACAGTACGTATCTGAAGAGCAGGACTCCATTTGTCTTTAAGAATATCAAGAC
JMFN014F11+ TCAAAAGCACAGTACGTATCTGAAGAGCAGGACTCCATTTGTCTTTAAGAATATCAAGAC
JMSF045F19+ TCAAAAGCACAGTACGTATCTGAAGAGCAGGACTCCATTTGTCTTTAAGAATATCAAGAC
rJMSF045F19- TCAAAAGCACAGTACGTATCTGAAGAGCAGGACTCCATTTGTCTTTAAGAATATCAAGAC
JMSF038L10+ TCAAAAGCACAGTACGTATCTGAAGAGCAGGACTCCATTTGTCTTTAAGAATATCAAGAC
____________________________________________________________
consensus TCAAAAGCACAGTACGTATCTGAAGAGCAGGACTCCATTTGTCTTTAAGAATATCAAGAC
. : . : . : . : . : . :
rJMCP016F11+ AGATCCTTCCAAGCTTATCAATGTTAGGGTGGTATATTTTGGTGAGGAACCGAACCTTAG
JMFN007I13+ AGATCCTTCCAAGCTTATCAATGTTAGGGTGGTATATTTTGGTGAGGAACCGAACCTTAG
JMFN043P01+ AGATCCTTCCAAGCTTATCAATGTTAGGGTGGTATATTTTGGTGAGGAACCGAACCTTAG
rJMSF038L10- AGATCCTTCCAAGCTTATCAATGTTAGGGTGGTATATTTTGGTGAGGAACCGAACCTTAG
JMFN014F11+ AGATCCTTCCAAGCTTATCAATGTTAGGGTGGTATATTTTGGTGAGGAACCGAACCTTAG
JMSF045F19+ AGATCCTTCCAAGCTTATCAATGTTAGGGTGGTATATTTTGGTGAGGAACCGAACCTTAG
rJMSF045F19- AGATCCTTCCAAGCTTATCAATGTTAGGGTGGTATATTTTGGTGAGGAACCGAACCTTAG
JMSF038L10+ AGATCCTTCCAAGCTTATCAATGTTAGGGTGGTATATTTTGGTGAGGAACCGAACCTTAG
____________________________________________________________
consensus AGATCCTTCCAAGCTTATCAATGTTAGGGTGGTATATTTTGGTGAGGAACCGAACCTTAG
. : . : . : . : . : . :
rJMCP016F11+ GAGCAGCCATTGGGTATTCTTCAGGTAAAAATAATTCCAGCTTGAAAACACCTCCT
JMFN007I13+ GAGCAGCCATTGGGTATTCTTCAGGTAAAAATAATTCCAGCTTGAAAACACCTCCTTCAT
JMFN043P01+ GAGCAGCCATTGGGTATTCTTCAGGTAAAAATAATTCCAGCTTGAAAACACCTCCTTCAT
rJMSF038L10- GAGCAGCCATTGGGTATTCTTCAGGTAAAAATAATTCCAGCTTGAAAACACCTCCTTCAT
JMFN014F11+ GAGCAGCCATTGGGTATTCTTCAGGTAAAAATAATTCCAGCTTGAAAACACCTCCTTCAT
JMSF045F19+ GAGCAGCCATTGGGTATTCTTCAGGTAAAAATAATTCCAGCTTGAAAACACCTCCTTCAT
rJMSF045F19- GAGCAGCCATTGGGTATTCTTCAGGTAAAAATAATTCCAGCTTGAAAACACCTCCTTCAT
JMSF038L10+ GAGCAGCCATTGGGTATTCTTCAGGTAAAAATAATTCCAGCTTGAAAACACCTCCTTCAT
____________________________________________________________
consensus GAGCAGCCATTGGGTATTCTTCAGGTAAAAATAATTCCAGCTTGAAAACACCTCCTTCAT
. : . : . : . : . : . :
JMFN007I13+ AGGGAGACTGTGTTGGACCAAGAATCATGACATTAAAATACCGCATGTTCTCCTCCGATG
JMFN043P01+ AGGGAGACTGTGTTGGACCAAGAATCATGACATTAAAATACCGCATGTTCTCCTCCGATG
rJMSF038L10- AGGGAGACTGTGTTGGACCAAGAATCATGACATTAAAATACCGCATGTTCTCCTCCGATG
JMFN014F11+ AGGGAGACTGTGTTGGACCAAGAATCATGACATTAAAATACCGCATGTTCTCCTCCGATG
JMSF045F19+ AGGGAGACTGTGTTGGACCAAGAATCATGACATTAAAATACCGCATGTTCTCCTCCGATG
rJMSF045F19- AGGGAGACTGTGTTGGACCAAGAATCATGACATTAAAATACCGCATGTTCTCCTCCGATG
JMSF038L10+ AGGGAGACTGTGTTGGACCAAGAATCATGACATTAAAATACCGCATGTTCTCCTCCGATG
____________________________________________________________
consensus AGGGAGACTGTGTTGGACCAAGAATCATGACATTAAAATACCGCATGTTCTCCTCCGATG
. : . : . : . : . : . :
JMFN007I13+ GGGAAGCACTTATTCCAGGTGCTGGTTCGCTGAGGAGACGCTGTGTTTCCTTGATGATTC
JMFN043P01+ GGGAAGCACTTATTCCAGGTGCTGGTTCGCTGAGGAGACGCTGTGTTTCCTTGATGATTC
rJMSF038L10- GGGAAGCACTTATTCCAGGTGCTGGTTCGCTGAGGAGACGCTGTGTTTCCTTGATGATTC
JMFN014F11+ GGGAAGCACTTATTCCAGGTGCTGGTTCGCTGAGGAGACGCTGTGTTTCCTTGATGATTC
JMSF045F19+ GGGAAGCACTTATTCCAGGTGCTGGTTCGCTGAGGAGACGCTGTGTTTCCTTGATGATTC
rJMSF045F19- GGGAAGCACTTATTCCAGGTGCTGGTTCGCTGAGGAGACGCTGTGTTTCCTTGATGATTC
JMSF038L10+ GGGAAGCACTTATTCCAGGTGCTGGTTCGCTGAGGAGACGCTGTGTTTCCTTGATGATTC
____________________________________________________________
consensus GGGAAGCACTTATTCCAGGTGCTGGTTCGCTGAGGAGACGCTGTGTTTCCTTGATGATTC
. : . : . : . : . : . :
JMFN007I13+ TACGGGGAAGATTGCT
JMFN043P01+ TACGGGGAAGATTGCTGTTCGCCATTGAA
rJMSF038L10- TACGGGGAAGATTGCTGTTCGCCATTGAATTGAATCGAAAGTTCCTTTCGGTCGGAGTTT
JMFN014F11+ TACGGGGAAGATTGCTGTTCGCCATTGAATTGAATCGAAAGTTCCTTTCGGTCGGAGTTT
JMSF045F19+ TACGGGGAAGATTGCTGTTCGCCATTGAATTGAATCGAAAGTTCCTTTCGGTCGGAGTTT
rJMSF045F19- TACGGGGAAGATTGCTGTTCGCCATTGAATTGAATCGAAAGTTCCTTTCGGTCGGAGTTT
JMSF038L10+ TACGGGGAAGATTGCTGTTCGCCATTGAATTGAATCGAAAGTTCCTTTCGGTCGGAGTTT
____________________________________________________________
consensus TACGGGGAAGATTGCTGTTCGCCATTGAATTGAATCGAAAGTTCCTTTCGGTCGGAGTTT
. : . : . : . : . : . :
rJMSF038L10- TTACGCTAAGGCTTTTGTAGAGACAGCGATAGAGTGTTGAGAGTCGGAGACTT
JMFN014F11+ TTACGCTAAGGCTTTTGTAGAGACAGCGATAGAGTGTTGAGAGTCGGAGACTT
JMSF045F19+ TTACGCTAAGGCTTTTGTAGAGA
rJMSF045F19- TTACGCTAA
JMSF038L10+ TTACGCTAAGGCTTTTGTAGAGACAGCGATAGAGTGTTGAGAGTCGGAGACTTTCTCTCC
____________________________________________________________
consensus TTACGCTAAGGCTTTTGTAGAGACAGCGATAGAGTGTTGAGAGTCGGAGACTTTCTCTCC