clone | seq. | 5'-sequence | 3'-sequence | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
JMFF026A21 | Sequence | 576 | 005660 (9) | emb|CDP09356.1| | 2e-55 | unnamed protein product [Coffea canephora] | 755 | 005660 (9) | ref|XP_009783713.1| | 6e-85 | PREDICTED: 50S ribosomal protein L27, chloroplastic-like [Nicotiana sylvestris] |
JMFF043O05 | Sequence | 634 | 005660 (9) | ref|XP_009783713.1| | 3e-86 | PREDICTED: 50S ribosomal protein L27, chloroplastic-like [Nicotiana sylvestris] | |||||
JMFF046K18 | Sequence | 548 | 005660 (9) | ref|XP_010088919.1| | 8e-47 | 50S ribosomal protein L27 [Morus notabilis] gb|EXB37123.1| 50S ribosomal protein | 503 | 005660 (9) | ref|XP_009783713.1| | 2e-67 | PREDICTED: 50S ribosomal protein L27, chloroplastic-like [Nicotiana sylvestris] |
JMSF046C02 | Sequence | 538 | 005660 (9) | ref|XP_004245259.1| | 3e-76 | PREDICTED: 50S ribosomal protein L27, chloroplastic-like [Solanum lycopersicum] | 761 | 005660 (9) | ref|XP_009783713.1| | 1e-83 | PREDICTED: 50S ribosomal protein L27, chloroplastic-like [Nicotiana sylvestris] |
Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.
SCORE============================================Contig005660============================================ 934 179 ------------------------------------------------------------>JMFF046K18 <-------------------------------------rJMFF046K18 179 --------------------------------------------------------------->JMFF026A21 <--------------------------------------------------rJMFF026A21 334 ------------------------------------------------------->JMSF046C02 <---------------------------------------------------------------rJMSF046C02
The following clones don't have the opposite end in this pair.
<-----------------------------------------------------------rJMSF051M09# ------------------------------------------------------>JMFF043O05- <---------------------------------------------------------------------rJMSF017E21*