| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF026A21 | Sequence | 576 | 005660 (9) | emb|CDP09356.1| | 2e-55 | unnamed protein product [Coffea canephora] | 755 | 005660 (9) | ref|XP_009783713.1| | 6e-85 | PREDICTED: 50S ribosomal protein L27, chloroplastic-like [Nicotiana sylvestris] |
| JMFF043O05 | Sequence | 634 | 005660 (9) | ref|XP_009783713.1| | 3e-86 | PREDICTED: 50S ribosomal protein L27, chloroplastic-like [Nicotiana sylvestris] | |||||
| JMFF046K18 | Sequence | 548 | 005660 (9) | ref|XP_010088919.1| | 8e-47 | 50S ribosomal protein L27 [Morus notabilis] gb|EXB37123.1| 50S ribosomal protein | 503 | 005660 (9) | ref|XP_009783713.1| | 2e-67 | PREDICTED: 50S ribosomal protein L27, chloroplastic-like [Nicotiana sylvestris] |
| JMSF017E21 | Sequence | 208 | 006471 (3) | 750 | 005660 (9) | ref|XP_009783713.1| | 2e-85 | PREDICTED: 50S ribosomal protein L27, chloroplastic-like [Nicotiana sylvestris] | |||
| JMSF046C02 | Sequence | 538 | 005660 (9) | ref|XP_004245259.1| | 3e-76 | PREDICTED: 50S ribosomal protein L27, chloroplastic-like [Solanum lycopersicum] | 761 | 005660 (9) | ref|XP_009783713.1| | 1e-83 | PREDICTED: 50S ribosomal protein L27, chloroplastic-like [Nicotiana sylvestris] |
| JMSF051M09 | Sequence | 642 | 014787 | 713 | 005660 (9) | ref|XP_009783713.1| | 4e-85 | PREDICTED: 50S ribosomal protein L27, chloroplastic-like [Nicotiana sylvestris] | |||
This contig is upended
. : . : . : . : . : . :
JMFF046K18- GCTACTCGCTCTGTGTCTCTGTCCTCCTCTGCCT
JMFF026A21- GCTACTCGCTCTGTGTCTCTGTCCTCCTCTGCCT
____________________________________________________________
consensus GCTACTCGCTCTGTGTCTCTGTCCTCCTCTGCCT
. : . : . : . : . : . :
JMFF046K18- CGCCAGTCGCCACCGCCCACCAGACACCACACGGCCGCACCAGTCGCCGACTAGCAGCCG
JMFF026A21- CGCCAGTCGCCACCGCCCACCAGACACCACACGGCCGCACCAGTCGCCGACTAGCAGCCG
____________________________________________________________
consensus CGCCAGTCGCCACCGCCCACCAGACACCACACGGCCGCACCAGTCGCCGACTAGCAGCCG
. : . : . : . : . : . :
JMFF046K18- TTCGTTTCAACCGTACTCCTCTGCTTCAACCGTCGCCACACCAGTTGGAACGCTCCAGCC
JMFF026A21- TTCGTTTCAACCGTACTCCTCTGCTTCAACCGTCGCCACACCAGTTGGAACGCTCCAGCC
____________________________________________________________
consensus TTCGTTTCAACCGTACTCCTCTGCTTCAACCGTCGCCACACCAGTTGGAACGCTCCAGCC
. : . : . : . : . : . :
JMFF046K18- AACATTCAAATACTCAAAATTTCGGAATACTGAGATGCTCCAAAGCTGAACTCAGCTTGT
JMFF026A21- AACATTCAAATACTCAAAATTTCGGAATACTGAGATGCTCCAAAGCTGAACTCAGCTTGT
JMSF046C02- CATTCAAATACTCAAAATTTCGGAATACTGAGATTCTCCGAAGCTGAACCCAGCTTGT
rJMSF046C02+ CATTCAAATACTCAAAATTTCGGAATACTGAGATTCTCCGAAGCTGAACCCAGCTTGT
____________________________________________________________
consensus AACATTCAAATACTCAAAATTTCGGAATACTGAGATTCTCCGAAGCTGAACCCAGCTTGT
. : . : . : . : . : . :
JMFF046K18- TTTCCAGTAGCACTTTGAACTGATCCAATTCCCTTATCCTTCGTTGAATC----------
JMFF026A21- TTTCCAGTAGCACTTTGAACTGATCCAATTCCCTTATCCTTCGTTGAATC----------
JMSF046C02- TTTCCAGTAGCACTTTGAACTGATCCAATTCCCTTCTCCTTCGTTGAATCGGTTTCATTT
rJMSF046C02+ TTTCCAGTAGCACTTTGAACTGATCCAATTCCCTTCTCCTTCGTTGAATCGGTTTCATTT
JMFF043O05- AGGCACATTTTTTTG
____________________________________________________________
consensus TTTCCAGTAGCACTTTGAACTGATCCAATTCCCTTCTCCTTCGTTGAATCGGTTTCATTT
. : . : . : . : . : . :
JMFF046K18- --------GGAGTCATGAATTTCACAACACTGTTTAGGAGGTTGAATATCAGAGAGTTGG
JMFF026A21- --------GGAGTCATGAATTTCACAACACTGTTTAGGAGGTTGAATATCAGAGAGTTGG
JMSF046C02- TGGCAAAGGAAGTCATGAATTTTGCAACACTGTTTAGGAGGTTGAATATCAGAGAGTTGG
rJMSF046C02+ TGGCAAAGGAAGTCATGAATTTTGCAACACTGTTTAGGAGGTTGAATATCAGAGAGTTGG
JMFF043O05- TTGCTTCAGGAGTCATGAATTTCACAACACTGTTTAGGAGGTTGAATATCAGAGAGTTGG
rJMSF051M09+ GGAGTCATGAATTTCACAACACTGTTTAGGAGGTTGAATATCAGAGAGTTGG
rJMFF026A21+ GGAGTCATGAATTTCACAACACTGTTTAGGAGGTTGAATATCAGAGAGTTGG
rJMSF017E21+ CAGGAGTCATGAATTTCACAACACTGTTTAGGAGGTTGAATATCAGAGAGTTGG
____________________________________________________________
consensus TGGCAACGGGAGTCATGAATTTCACAACACTGTTTAGGAGGTTGAATATCAGAGAGTTGG
. : . : . : . : . : . :
JMFF046K18- TATCAAATGCACCAGTATACAGTTCTGGTAGCGATGCATCTGGGGAGGGATTGAGCTTAG
JMFF026A21- TATCAAATGCACCAGTATACAGTTCTGGTAGCGATGCATCTGGGGAGGGATTGAGCTTAG
JMSF046C02- TATCAAATGCACCTGTATACAGTTCTGGTAGCGATGCATCTGGGGAGGGATTGAGCTTAG
rJMSF046C02+ TATCAAATGCACCTGTATACAGTTCTGGTAGCGATGCATCTGGGGAGGGATTGAGCTTAG
JMFF043O05- TATCAAATGCACCAGTATACAGTTCTGGTAGCGATGCATCTGGGGAGGGATTGAGCTTAG
rJMSF051M09+ TATCAAATGCACCAGTATACAGTTCTGGTAGCGATGCATCTGGGGAGGGATTGAGCTTAG
rJMFF026A21+ TATCAAATGCACCAGTATACAGTTCTGGTAGCGATGCATCTGGGGAGGGATTGAGCTTAG
rJMSF017E21+ TATCAAATGCACCAGTATACAGTTCTGGTAGCGATGCATCTGGGGAGGGATTGAGCTTAG
____________________________________________________________
consensus TATCAAATGCACCAGTATACAGTTCTGGTAGCGATGCATCTGGGGAGGGATTGAGCTTAG
. : . : . : . : . : . :
JMFF046K18- TACTCCGGCGCTGGGCGACCAAAAAGACAGCGGGATCCACAAAAAATGGACGTGACTCAN
JMFF026A21- TACTCCGGCGCTGGGCGACCAAAAAGACAGCGGGATCCACAAAAAATGGACGTGACTCAA
JMSF046C02- TACTCCGGCGCTGGGCTACCAAAAAGACAGCAGGATCCACAAAAAATGGACGTGACTCAA
rJMSF046C02+ TACTCCGGCGCTGGGCTACCAAAAAGACAGCAGGATCCACAAAAAATGGACGTGACTCAA
JMFF043O05- TACTCCGGCGCTGGGCGACCAAAAAGACGGCGGGATCCACAAAAAATGGACGTGACTCAA
rJMSF051M09+ TACTCCGGCGCTGGGCGACCAAAAAGACAGCGGGATCCACAAAAAATGGACGTGACTCAA
rJMFF026A21+ TACTCCGGCGCTGGGCGACCAAAAAGACAGCGGGATCCACAAAAAATGGACGTGACTCAA
rJMFF046K18+ GGCGCTGGGCGACCAAAAAGACAGCGGGATCCACAAAAAATGGACGTGACTCAA
rJMSF017E21+ TACTCCGGCGCTGGGCGACCAAAAAGACAGCGGGATCCACAAAAAATGGACGTGACTCAA
____________________________________________________________
consensus TACTCCGGCGCTGGGCGACCAAAAAGACAGCGGGATCCACAAAAAATGGACGTGACTCAA
. : . : . : . : . : . :
JMFF046K18- AGCCCAAGAATCTTGGAGTAAAGAAATTCGGTGGAGAGAGGGTGATCCCTGGAAATATCA
JMFF026A21- AGCCCAAGAATCTTGGAGTAAAGAAATTCGGTGGAGAGAGGGTGATCCCTGGAAATATCA
JMSF046C02- AGCCCAAGAATCTTGGAGTAAAGAAATTCGGTGGAGAGAGGGTGATCCCGGGAAATATCA
rJMSF046C02+ AGCCCAAGAATCTTGGAGTAAAGAAATTCGGTGGAGAGAGGGTGATCCCGGGAAATATCA
JMFF043O05- AGCCCAAGAATCTTGGAGTAAAGAAATTCGGTGGAGAGAGGGTGATCCCTGGAAATATCA
rJMSF051M09+ AGCCCAAGAATCTTGGAGTAAAGAAATTCGGTGGAGAGAGGGTGATCCCTGGAAATATCA
rJMFF026A21+ AGCCCAAGAATCTTGGAGTAAAGAAATTCGGTGGAGAGAGGGTGATCCCTGGAAATATCA
rJMFF046K18+ AGCCCAAGAATCTTGGAGTAAAGAAATTCGGTGGAGAGAGGGTGATCCCTGGAAATATCA
rJMSF017E21+ AGCCCAAGAATCTTGGAGTAAAGAAATTCGGTGGAGAGAGGGTGATCCCTGGAAATATCA
____________________________________________________________
consensus AGCCCAAGAATCTTGGAGTAAAGAAATTCGGTGGAGAGAGGGTGATCCCTGGAAATATCA
. : . : . : . : . : . :
JMFF046K18- TTGTTCGCCAAAGAGGAACCCGATTTCATCCCGGGGAATACGTTGGAATTGG
JMFF026A21- TTGTTCGCCAAAGAGGAACCCGATTTCATCCCGGGGATTACGTTGGAATTGGTAAAGATC
JMSF046C02- TTGTTCGCCAAAGAGGAACCCGATTTCATCCAGGGGATTATGTTGGAATTGGTAAAGATC
rJMSF046C02+ TTGTTCGCCAAAGAGGAACCCGATTTCATCCAGGGGATTATGTTGGAATTGGTAAAGATC
JMFF043O05- TTGTTCGCCAAAGAGGAACCCGATTTCATCCCGGGGATTACGTTGGAATTGGTAAAGATC
rJMSF051M09+ TTGTTCGCCAAAGAGGAACCCGATTTCATCCCGGGGATTACGTTGGAATTGGTAAAGATC
rJMFF026A21+ TTGTTCGCCAAAGAGGAACCCGATTTCATCCCGGGGATTACGTTGGAATTGGTAAAGATC
rJMFF046K18+ TTGTTCGCCAAAGAGGAACCCGATTTCATCCCGGGGATTACGTTGGAATTGGTAAAGATC
rJMSF017E21+ TTGTTCGCCAAAGAGGAACCCGATTTCATCCCGGGGATTACGTTGGAATTGGTAAAGATC
____________________________________________________________
consensus TTGTTCGCCAAAGAGGAACCCGATTTCATCCCGGGGATTACGTTGGAATTGGTAAAGATC
. : . : . : . : . : . :
JMFF026A21- ACACCCTTTATGCTTTAAAA
JMSF046C02- ACACCCTTTATGCTTTAAAAGAAGGGTGTGTCAAGTTTGAGCGTAACAAGCTGACTGGAC
rJMSF046C02+ ACACCCTTTATGCTTTAAAAGAAGGGTGTGTCAAGTTTGAGCGTAACAAGCTGACTGGAC
JMFF043O05- ACACCCTTTATGCTTTAAAAGAAGGGTGTGTCAAGTTTGAGCGTAACAAGCTGACTGGAC
rJMSF051M09+ ACACCCTTTATGCTTTAAAAGAAGGGTGTGTCAAGTTTGAGCGTAACAAGCTGACTGGAC
rJMFF026A21+ ACACCCTTTATGCTTTAAAAGAAGGGTGTGTCAAGTTTGAGCGTAACAAGCTGACTGGAC
rJMFF046K18+ ACACCCTTTATGCTTTAAAAGAAGGGTGTGTCAAGTTTGAGCGTAACAAGCTGACTGGAC
rJMSF017E21+ ACACCCTTTATGCTTTAAAAGAAGGGTGTGTCAAGTTTGAGCGTAACAAGCTGACTGGAC
____________________________________________________________
consensus ACACCCTTTATGCTTTAAAAGAAGGGTGTGTCAAGTTTGAGCGTAACAAGCTGACTGGAC
. : . : . : . : . : . :
JMSF046C02- GTAAGTGGGTGCATGTTGAGCCCAAAGATGGTCATGTTCTTCA
rJMSF046C02+ GTAAGTGGGTGCATGTTGAGCCCAAAGATGGTCATGTTCTTCATCCAATATATTCGACTG
JMFF043O05- GTAAGTGGGTGCATGTTGAGCCCAAAGATGGTCATGTACTTCACCCAATATATTCGACTG
rJMSF051M09+ GTAAGTGGGTGCATGTTGAGCCCAAAGATGGTCATGTACTTCACCCAATATATTCGACTG
rJMFF026A21+ GTAAGTGGGTGCATGTTGAGCCCAAAGATGGTCATGTACTTCACCCAATATATTCGACTG
rJMFF046K18+ GTAAGTGGGTGCATGTTGAGCCCAAAGATGGTCATGTACTTCACCCAATATATTCGACTG
rJMSF017E21+ GTAAGTGGGTGCATGTTGAGCCCAAAGATGGTCATGTACTTCACCCAATATATTCGACTG
____________________________________________________________
consensus GTAAGTGGGTGCATGTTGAGCCCAAAGATGGTCATGTACTTCACCCAATATATTCGACTG
. : . : . : . : . : . :
rJMSF046C02+ CTGCAGATCCTGGGCTGAAGACTGCTACTTAGATTTTGCTTCCGCCAATTTTAAATCACT
JMFF043O05- CTGCAGATCCCGAGCTGAAGACTGCTACTTAGATTTTGCTTCCTCCAATTTTAAATCACT
rJMSF051M09+ CTGCAGATCCCGAGCTGAAGACTGCTACTTAGATTTTGCTTCCTCCAATTTTAAATCACT
rJMFF026A21+ CTGCAGATCCCGAGCTGAAGACTGCTACTTAGATTTTGCTTCCTCCAATTTTAAATCACT
rJMFF046K18+ CTGCAGATCCCGAGCTGAAGACTGCTACTTAGATTTTGCTTCCTCCAATTTTAAATCACT
rJMSF017E21+ CTGCAGATCCCGAGCTGAAGACTGCTACTTAGATTTTGCTTCCTCCAATTTTAAATCACT
____________________________________________________________
consensus CTGCAGATCCCGAGCTGAAGACTGCTACTTAGATTTTGCTTCCTCCAATTTTAAATCACT
. : . : . : . : . : . :
rJMSF046C02+ TA
JMFF043O05- TATCTCGAACTATGG
rJMSF051M09+ TATCTCGAACTATGGAGTAACCATCTATAAGTTTTGAATTCTTGTTTCCATTTATTCAAG
rJMFF026A21+ TA
rJMFF046K18+ TA
rJMSF017E21+ TATCTCGAACTATGGAGTAACCATCTATAAGTTTTGAATTCTTGTTTCCATTTATTCAAG
____________________________________________________________
consensus TATCTCGAACTATGGAGTAACCATCTATAAGTTTTGAATTCTTGTTTCCATTTATTCAAG
. : . : . : . : . : . :
rJMSF051M09+ GCGCTAGATACACTTTCTGTACTTC
rJMSF017E21+ GCGCTAGATACACTTTCTGTACTTCACTTGGCCTCTTTATGACAGACATTTTTGTTAGTA
____________________________________________________________
consensus GCGCTAGATACACTTTCTGTACTTCACTTGGCCTCTTTATGACAGACATTTTTGTTAGTA
. : . : . : . : . : . :
rJMSF017E21+ ATAATAGTCATCTTTTCTCTTTGGTTGCTATATTTTGTAATTCAAAATGAATACACTCAC
____________________________________________________________
consensus ATAATAGTCATCTTTTCTCTTTGGTTGCTATATTTTGTAATTCAAAATGAATACACTCAC