Contig 005660:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF026A21Sequence576005660 (9)emb|CDP09356.1|2e-55unnamed protein product [Coffea canephora]755005660 (9)ref|XP_009783713.1|6e-85PREDICTED: 50S ribosomal protein L27, chloroplastic-like [Nicotiana sylvestris]
JMFF043O05Sequence634005660 (9)ref|XP_009783713.1|3e-86PREDICTED: 50S ribosomal protein L27, chloroplastic-like [Nicotiana sylvestris]
JMFF046K18Sequence548005660 (9)ref|XP_010088919.1|8e-4750S ribosomal protein L27 [Morus notabilis] gb|EXB37123.1| 50S ribosomal protein503005660 (9)ref|XP_009783713.1|2e-67PREDICTED: 50S ribosomal protein L27, chloroplastic-like [Nicotiana sylvestris]
JMSF017E21Sequence208006471 (3)750005660 (9)ref|XP_009783713.1|2e-85PREDICTED: 50S ribosomal protein L27, chloroplastic-like [Nicotiana sylvestris]
JMSF046C02Sequence538005660 (9)ref|XP_004245259.1|3e-76PREDICTED: 50S ribosomal protein L27, chloroplastic-like [Solanum lycopersicum]761005660 (9)ref|XP_009783713.1|1e-83PREDICTED: 50S ribosomal protein L27, chloroplastic-like [Nicotiana sylvestris]
JMSF051M09Sequence642014787713005660 (9)ref|XP_009783713.1|4e-85PREDICTED: 50S ribosomal protein L27, chloroplastic-like [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF046K18- GCTACTCGCTCTGTGTCTCTGTCCTCCTCTGCCT
JMFF026A21- GCTACTCGCTCTGTGTCTCTGTCCTCCTCTGCCT
                      ____________________________________________________________
consensus GCTACTCGCTCTGTGTCTCTGTCCTCCTCTGCCT
 
. : . : . : . : . : . :
JMFF046K18- CGCCAGTCGCCACCGCCCACCAGACACCACACGGCCGCACCAGTCGCCGACTAGCAGCCG
JMFF026A21- CGCCAGTCGCCACCGCCCACCAGACACCACACGGCCGCACCAGTCGCCGACTAGCAGCCG
                      ____________________________________________________________
consensus CGCCAGTCGCCACCGCCCACCAGACACCACACGGCCGCACCAGTCGCCGACTAGCAGCCG
 
. : . : . : . : . : . :
JMFF046K18- TTCGTTTCAACCGTACTCCTCTGCTTCAACCGTCGCCACACCAGTTGGAACGCTCCAGCC
JMFF026A21- TTCGTTTCAACCGTACTCCTCTGCTTCAACCGTCGCCACACCAGTTGGAACGCTCCAGCC
                      ____________________________________________________________
consensus TTCGTTTCAACCGTACTCCTCTGCTTCAACCGTCGCCACACCAGTTGGAACGCTCCAGCC
 
. : . : . : . : . : . :
JMFF046K18- AACATTCAAATACTCAAAATTTCGGAATACTGAGATGCTCCAAAGCTGAACTCAGCTTGT
JMFF026A21- AACATTCAAATACTCAAAATTTCGGAATACTGAGATGCTCCAAAGCTGAACTCAGCTTGT
JMSF046C02- CATTCAAATACTCAAAATTTCGGAATACTGAGATTCTCCGAAGCTGAACCCAGCTTGT
rJMSF046C02+ CATTCAAATACTCAAAATTTCGGAATACTGAGATTCTCCGAAGCTGAACCCAGCTTGT
                      ____________________________________________________________
consensus AACATTCAAATACTCAAAATTTCGGAATACTGAGATTCTCCGAAGCTGAACCCAGCTTGT
 
. : . : . : . : . : . :
JMFF046K18- TTTCCAGTAGCACTTTGAACTGATCCAATTCCCTTATCCTTCGTTGAATC----------
JMFF026A21- TTTCCAGTAGCACTTTGAACTGATCCAATTCCCTTATCCTTCGTTGAATC----------
JMSF046C02- TTTCCAGTAGCACTTTGAACTGATCCAATTCCCTTCTCCTTCGTTGAATCGGTTTCATTT
rJMSF046C02+ TTTCCAGTAGCACTTTGAACTGATCCAATTCCCTTCTCCTTCGTTGAATCGGTTTCATTT
JMFF043O05- AGGCACATTTTTTTG
                      ____________________________________________________________
consensus TTTCCAGTAGCACTTTGAACTGATCCAATTCCCTTCTCCTTCGTTGAATCGGTTTCATTT
 
. : . : . : . : . : . :
JMFF046K18- --------GGAGTCATGAATTTCACAACACTGTTTAGGAGGTTGAATATCAGAGAGTTGG
JMFF026A21- --------GGAGTCATGAATTTCACAACACTGTTTAGGAGGTTGAATATCAGAGAGTTGG
JMSF046C02- TGGCAAAGGAAGTCATGAATTTTGCAACACTGTTTAGGAGGTTGAATATCAGAGAGTTGG
rJMSF046C02+ TGGCAAAGGAAGTCATGAATTTTGCAACACTGTTTAGGAGGTTGAATATCAGAGAGTTGG
JMFF043O05- TTGCTTCAGGAGTCATGAATTTCACAACACTGTTTAGGAGGTTGAATATCAGAGAGTTGG
rJMSF051M09+ GGAGTCATGAATTTCACAACACTGTTTAGGAGGTTGAATATCAGAGAGTTGG
rJMFF026A21+ GGAGTCATGAATTTCACAACACTGTTTAGGAGGTTGAATATCAGAGAGTTGG
rJMSF017E21+ CAGGAGTCATGAATTTCACAACACTGTTTAGGAGGTTGAATATCAGAGAGTTGG
                      ____________________________________________________________
consensus TGGCAACGGGAGTCATGAATTTCACAACACTGTTTAGGAGGTTGAATATCAGAGAGTTGG
 
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JMFF046K18- TATCAAATGCACCAGTATACAGTTCTGGTAGCGATGCATCTGGGGAGGGATTGAGCTTAG
JMFF026A21- TATCAAATGCACCAGTATACAGTTCTGGTAGCGATGCATCTGGGGAGGGATTGAGCTTAG
JMSF046C02- TATCAAATGCACCTGTATACAGTTCTGGTAGCGATGCATCTGGGGAGGGATTGAGCTTAG
rJMSF046C02+ TATCAAATGCACCTGTATACAGTTCTGGTAGCGATGCATCTGGGGAGGGATTGAGCTTAG
JMFF043O05- TATCAAATGCACCAGTATACAGTTCTGGTAGCGATGCATCTGGGGAGGGATTGAGCTTAG
rJMSF051M09+ TATCAAATGCACCAGTATACAGTTCTGGTAGCGATGCATCTGGGGAGGGATTGAGCTTAG
rJMFF026A21+ TATCAAATGCACCAGTATACAGTTCTGGTAGCGATGCATCTGGGGAGGGATTGAGCTTAG
rJMSF017E21+ TATCAAATGCACCAGTATACAGTTCTGGTAGCGATGCATCTGGGGAGGGATTGAGCTTAG
                      ____________________________________________________________
consensus TATCAAATGCACCAGTATACAGTTCTGGTAGCGATGCATCTGGGGAGGGATTGAGCTTAG
 
. : . : . : . : . : . :
JMFF046K18- TACTCCGGCGCTGGGCGACCAAAAAGACAGCGGGATCCACAAAAAATGGACGTGACTCAN
JMFF026A21- TACTCCGGCGCTGGGCGACCAAAAAGACAGCGGGATCCACAAAAAATGGACGTGACTCAA
JMSF046C02- TACTCCGGCGCTGGGCTACCAAAAAGACAGCAGGATCCACAAAAAATGGACGTGACTCAA
rJMSF046C02+ TACTCCGGCGCTGGGCTACCAAAAAGACAGCAGGATCCACAAAAAATGGACGTGACTCAA
JMFF043O05- TACTCCGGCGCTGGGCGACCAAAAAGACGGCGGGATCCACAAAAAATGGACGTGACTCAA
rJMSF051M09+ TACTCCGGCGCTGGGCGACCAAAAAGACAGCGGGATCCACAAAAAATGGACGTGACTCAA
rJMFF026A21+ TACTCCGGCGCTGGGCGACCAAAAAGACAGCGGGATCCACAAAAAATGGACGTGACTCAA
rJMFF046K18+ GGCGCTGGGCGACCAAAAAGACAGCGGGATCCACAAAAAATGGACGTGACTCAA
rJMSF017E21+ TACTCCGGCGCTGGGCGACCAAAAAGACAGCGGGATCCACAAAAAATGGACGTGACTCAA
                      ____________________________________________________________
consensus TACTCCGGCGCTGGGCGACCAAAAAGACAGCGGGATCCACAAAAAATGGACGTGACTCAA
 
. : . : . : . : . : . :
JMFF046K18- AGCCCAAGAATCTTGGAGTAAAGAAATTCGGTGGAGAGAGGGTGATCCCTGGAAATATCA
JMFF026A21- AGCCCAAGAATCTTGGAGTAAAGAAATTCGGTGGAGAGAGGGTGATCCCTGGAAATATCA
JMSF046C02- AGCCCAAGAATCTTGGAGTAAAGAAATTCGGTGGAGAGAGGGTGATCCCGGGAAATATCA
rJMSF046C02+ AGCCCAAGAATCTTGGAGTAAAGAAATTCGGTGGAGAGAGGGTGATCCCGGGAAATATCA
JMFF043O05- AGCCCAAGAATCTTGGAGTAAAGAAATTCGGTGGAGAGAGGGTGATCCCTGGAAATATCA
rJMSF051M09+ AGCCCAAGAATCTTGGAGTAAAGAAATTCGGTGGAGAGAGGGTGATCCCTGGAAATATCA
rJMFF026A21+ AGCCCAAGAATCTTGGAGTAAAGAAATTCGGTGGAGAGAGGGTGATCCCTGGAAATATCA
rJMFF046K18+ AGCCCAAGAATCTTGGAGTAAAGAAATTCGGTGGAGAGAGGGTGATCCCTGGAAATATCA
rJMSF017E21+ AGCCCAAGAATCTTGGAGTAAAGAAATTCGGTGGAGAGAGGGTGATCCCTGGAAATATCA
                      ____________________________________________________________
consensus AGCCCAAGAATCTTGGAGTAAAGAAATTCGGTGGAGAGAGGGTGATCCCTGGAAATATCA
 
. : . : . : . : . : . :
JMFF046K18- TTGTTCGCCAAAGAGGAACCCGATTTCATCCCGGGGAATACGTTGGAATTGG
JMFF026A21- TTGTTCGCCAAAGAGGAACCCGATTTCATCCCGGGGATTACGTTGGAATTGGTAAAGATC
JMSF046C02- TTGTTCGCCAAAGAGGAACCCGATTTCATCCAGGGGATTATGTTGGAATTGGTAAAGATC
rJMSF046C02+ TTGTTCGCCAAAGAGGAACCCGATTTCATCCAGGGGATTATGTTGGAATTGGTAAAGATC
JMFF043O05- TTGTTCGCCAAAGAGGAACCCGATTTCATCCCGGGGATTACGTTGGAATTGGTAAAGATC
rJMSF051M09+ TTGTTCGCCAAAGAGGAACCCGATTTCATCCCGGGGATTACGTTGGAATTGGTAAAGATC
rJMFF026A21+ TTGTTCGCCAAAGAGGAACCCGATTTCATCCCGGGGATTACGTTGGAATTGGTAAAGATC
rJMFF046K18+ TTGTTCGCCAAAGAGGAACCCGATTTCATCCCGGGGATTACGTTGGAATTGGTAAAGATC
rJMSF017E21+ TTGTTCGCCAAAGAGGAACCCGATTTCATCCCGGGGATTACGTTGGAATTGGTAAAGATC
                      ____________________________________________________________
consensus TTGTTCGCCAAAGAGGAACCCGATTTCATCCCGGGGATTACGTTGGAATTGGTAAAGATC
 
. : . : . : . : . : . :
JMFF026A21- ACACCCTTTATGCTTTAAAA
JMSF046C02- ACACCCTTTATGCTTTAAAAGAAGGGTGTGTCAAGTTTGAGCGTAACAAGCTGACTGGAC
rJMSF046C02+ ACACCCTTTATGCTTTAAAAGAAGGGTGTGTCAAGTTTGAGCGTAACAAGCTGACTGGAC
JMFF043O05- ACACCCTTTATGCTTTAAAAGAAGGGTGTGTCAAGTTTGAGCGTAACAAGCTGACTGGAC
rJMSF051M09+ ACACCCTTTATGCTTTAAAAGAAGGGTGTGTCAAGTTTGAGCGTAACAAGCTGACTGGAC
rJMFF026A21+ ACACCCTTTATGCTTTAAAAGAAGGGTGTGTCAAGTTTGAGCGTAACAAGCTGACTGGAC
rJMFF046K18+ ACACCCTTTATGCTTTAAAAGAAGGGTGTGTCAAGTTTGAGCGTAACAAGCTGACTGGAC
rJMSF017E21+ ACACCCTTTATGCTTTAAAAGAAGGGTGTGTCAAGTTTGAGCGTAACAAGCTGACTGGAC
                      ____________________________________________________________
consensus ACACCCTTTATGCTTTAAAAGAAGGGTGTGTCAAGTTTGAGCGTAACAAGCTGACTGGAC
 
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JMSF046C02- GTAAGTGGGTGCATGTTGAGCCCAAAGATGGTCATGTTCTTCA
rJMSF046C02+ GTAAGTGGGTGCATGTTGAGCCCAAAGATGGTCATGTTCTTCATCCAATATATTCGACTG
JMFF043O05- GTAAGTGGGTGCATGTTGAGCCCAAAGATGGTCATGTACTTCACCCAATATATTCGACTG
rJMSF051M09+ GTAAGTGGGTGCATGTTGAGCCCAAAGATGGTCATGTACTTCACCCAATATATTCGACTG
rJMFF026A21+ GTAAGTGGGTGCATGTTGAGCCCAAAGATGGTCATGTACTTCACCCAATATATTCGACTG
rJMFF046K18+ GTAAGTGGGTGCATGTTGAGCCCAAAGATGGTCATGTACTTCACCCAATATATTCGACTG
rJMSF017E21+ GTAAGTGGGTGCATGTTGAGCCCAAAGATGGTCATGTACTTCACCCAATATATTCGACTG
                      ____________________________________________________________
consensus GTAAGTGGGTGCATGTTGAGCCCAAAGATGGTCATGTACTTCACCCAATATATTCGACTG
 
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rJMSF046C02+ CTGCAGATCCTGGGCTGAAGACTGCTACTTAGATTTTGCTTCCGCCAATTTTAAATCACT
JMFF043O05- CTGCAGATCCCGAGCTGAAGACTGCTACTTAGATTTTGCTTCCTCCAATTTTAAATCACT
rJMSF051M09+ CTGCAGATCCCGAGCTGAAGACTGCTACTTAGATTTTGCTTCCTCCAATTTTAAATCACT
rJMFF026A21+ CTGCAGATCCCGAGCTGAAGACTGCTACTTAGATTTTGCTTCCTCCAATTTTAAATCACT
rJMFF046K18+ CTGCAGATCCCGAGCTGAAGACTGCTACTTAGATTTTGCTTCCTCCAATTTTAAATCACT
rJMSF017E21+ CTGCAGATCCCGAGCTGAAGACTGCTACTTAGATTTTGCTTCCTCCAATTTTAAATCACT
                      ____________________________________________________________
consensus CTGCAGATCCCGAGCTGAAGACTGCTACTTAGATTTTGCTTCCTCCAATTTTAAATCACT
 
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rJMSF046C02+ TA
JMFF043O05- TATCTCGAACTATGG
rJMSF051M09+ TATCTCGAACTATGGAGTAACCATCTATAAGTTTTGAATTCTTGTTTCCATTTATTCAAG
rJMFF026A21+ TA
rJMFF046K18+ TA
rJMSF017E21+ TATCTCGAACTATGGAGTAACCATCTATAAGTTTTGAATTCTTGTTTCCATTTATTCAAG
                      ____________________________________________________________
consensus TATCTCGAACTATGGAGTAACCATCTATAAGTTTTGAATTCTTGTTTCCATTTATTCAAG
 
. : . : . : . : . : . :
rJMSF051M09+ GCGCTAGATACACTTTCTGTACTTC
rJMSF017E21+ GCGCTAGATACACTTTCTGTACTTCACTTGGCCTCTTTATGACAGACATTTTTGTTAGTA
                      ____________________________________________________________
consensus GCGCTAGATACACTTTCTGTACTTCACTTGGCCTCTTTATGACAGACATTTTTGTTAGTA
 
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rJMSF017E21+ ATAATAGTCATCTTTTCTCTTTGGTTGCTATATTTTGTAATTCAAAATGAATACACTCAC
                      ____________________________________________________________
consensus ATAATAGTCATCTTTTCTCTTTGGTTGCTATATTTTGTAATTCAAAATGAATACACTCAC