clone | seq. | 5'-sequence | 3'-sequence | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
JMFF013C07 | Sequence | 583 | 004588 (10) | ref|XP_002304225.1| | 5e-58 | Profilin 3 family protein [Populus trichocarpa] ref|XP_011011002.1| PREDICTED: p | 645 | 004588 (10) | gb|EMS66850.1| | 3e-58 | Profilin-2/4 [Triticum urartu] |
JMFF018P16 | Sequence | 472 | 004588 (10) | ref|XP_009120170.1| | 4e-56 | PREDICTED: profilin-5 [Brassica rapa] | 679 | 004588 (10) | gb|EMS66850.1| | 3e-58 | Profilin-2/4 [Triticum urartu] |
JMFF033H23 | Sequence | 550 | 004588 (10) | ref|XP_002304225.1| | 4e-58 | Profilin 3 family protein [Populus trichocarpa] ref|XP_011011002.1| PREDICTED: p | 718 | 004588 (10) | gb|EMS66850.1| | 6e-57 | Profilin-2/4 [Triticum urartu] |
JMFF049B03 | Sequence | 637 | 004588 (10) | ref|XP_002304225.1| | 2e-57 | Profilin 3 family protein [Populus trichocarpa] ref|XP_011011002.1| PREDICTED: p | 610 | 004588 (10) | gb|ABC02750.1| | 2e-37 | profilin [Litchi chinensis] |
JMFN008K08 | Sequence | 616 | 004588 (10) | ref|XP_002304225.1| | 9e-58 | Profilin 3 family protein [Populus trichocarpa] ref|XP_011011002.1| PREDICTED: p | |||||
JMFN015J06 | Sequence | 624 | 004588 (10) | ref|XP_004149180.1| | 3e-28 | PREDICTED: profilin-like [Cucumis sativus] ref|XP_004158480.1| PREDICTED: profil |
Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.
SCORE============================================Contig004588============================================ 795 4 ------------------------------------------------------------------------------->JMFF049B03 <----------------------------------------------------------------------------rJMFF049B03 22 -------------------------------------------------------------------->JMFF033H23 <-----------------------------------------------------------------------------------------rJMFF033H23 73 ---------------------------------------------------------->JMFF018P16 <------------------------------------------------------------------------------------rJMFF018P16 108 ------------------------------------------------------------------------>JMFF013C07 <------------------------------------------------------------------------------rJMFF013C07
The following clones don't have the opposite end in this pair.
----------------------------------------------------------------------------->JMFN015J06- ---------------------------------------------------------------------------->JMFN008K08-