clone | seq. | 5'-sequence | 3'-sequence | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
JMFF001N19 | Sequence | 554 | 005876 (9) | ref|XP_004307764.1| | 1e-52 | PREDICTED: polyadenylate-binding protein 1 [Fragaria vesca subsp. vesca] | 688 | 005876 (9) | ref|XP_009631161.1| | 2e-64 | PREDICTED: polyadenylate-binding protein 2 [Nicotiana tomentosiformis] ref|XP_00 |
JMFF001N21 | Sequence | 622 | 005876 (9) | ref|XP_009631161.1| | 1e-38 | PREDICTED: polyadenylate-binding protein 2 [Nicotiana tomentosiformis] ref|XP_00 | |||||
JMFN007E08 | Sequence | 638 | 005876 (9) | gb|KDP22495.1| | 3e-87 | hypothetical protein JCGZ_26326 [Jatropha curcas] | |||||
JMFN011C03 | Sequence | 617 | 005876 (9) | ref|XP_009631161.1| | 3e-37 | PREDICTED: polyadenylate-binding protein 2 [Nicotiana tomentosiformis] ref|XP_00 | |||||
JMFN038D09 | Sequence | 617 | 005876 (9) | ref|XP_004307764.1| | 1e-77 | PREDICTED: polyadenylate-binding protein 1 [Fragaria vesca subsp. vesca] | |||||
JMSF013I15 | Sequence | 695 | 005876 (9) | ref|XP_009631161.1| | 2e-66 | PREDICTED: polyadenylate-binding protein 2 [Nicotiana tomentosiformis] ref|XP_00 | |||||
JMSF013K15 | Sequence | 416 | 005876 (9) | ref|XP_004307764.1| | 1e-18 | PREDICTED: polyadenylate-binding protein 1 [Fragaria vesca subsp. vesca] | 742 | 005876 (9) | ref|XP_009631161.1| | 2e-75 | PREDICTED: polyadenylate-binding protein 2 [Nicotiana tomentosiformis] ref|XP_00 |
Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.
SCORE============================================Contig005876============================================1145 29 ----------------------------------------------->JMFF001N19 <-----------------------------------------------------------rJMFF001N19 65 ----------------------------------->JMSF013K15 <--------------------------------------------------------------rJMSF013K15
The following clones don't have the opposite end in this pair.
----------------------------------------------------->JMFN011C03- ------------------------------------------------------->JMFN007E08- <----------------------------------------------------------rJMSF013I15- <-----------------------------------------------------rJMFF001N21- ---------------------------------------------------->JMFN038D09-