| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF001N19 | Sequence | 554 | 005876 (9) | ref|XP_004307764.1| | 1e-52 | PREDICTED: polyadenylate-binding protein 1 [Fragaria vesca subsp. vesca] | 688 | 005876 (9) | ref|XP_009631161.1| | 2e-64 | PREDICTED: polyadenylate-binding protein 2 [Nicotiana tomentosiformis] ref|XP_00 |
| JMFF001N21 | Sequence | 622 | 005876 (9) | ref|XP_009631161.1| | 1e-38 | PREDICTED: polyadenylate-binding protein 2 [Nicotiana tomentosiformis] ref|XP_00 | |||||
| JMFN007E08 | Sequence | 638 | 005876 (9) | gb|KDP22495.1| | 3e-87 | hypothetical protein JCGZ_26326 [Jatropha curcas] | |||||
| JMFN011C03 | Sequence | 617 | 005876 (9) | ref|XP_009631161.1| | 3e-37 | PREDICTED: polyadenylate-binding protein 2 [Nicotiana tomentosiformis] ref|XP_00 | |||||
| JMFN038D09 | Sequence | 617 | 005876 (9) | ref|XP_004307764.1| | 1e-77 | PREDICTED: polyadenylate-binding protein 1 [Fragaria vesca subsp. vesca] | |||||
| JMSF013I15 | Sequence | 695 | 005876 (9) | ref|XP_009631161.1| | 2e-66 | PREDICTED: polyadenylate-binding protein 2 [Nicotiana tomentosiformis] ref|XP_00 | |||||
| JMSF013K15 | Sequence | 416 | 005876 (9) | ref|XP_004307764.1| | 1e-18 | PREDICTED: polyadenylate-binding protein 1 [Fragaria vesca subsp. vesca] | 742 | 005876 (9) | ref|XP_009631161.1| | 2e-75 | PREDICTED: polyadenylate-binding protein 2 [Nicotiana tomentosiformis] ref|XP_00 |
This contig is upended
. : . : . : . : . : . :
JMFN011C03+ ACCTG
____________________________________________________________
consensus ACCTG
. : . : . : . : . : . :
JMFN011C03+ GAAGAAAAACTCATCAAATTACAAGAGTCGTACAGGATATTTCATCAATTTGCCCGTGCA
rJMFF001N21- ATTTGCCCGTGCA
rJMFF001N19- GAGTCGTACAGGAATATTCATCAATTTGCCCGTGCA
rJMSF013I15- GTGCA
rJMSF013K15- GTGCA
____________________________________________________________
consensus GAAGAAAAACTCATCAAATTACAAGAGTCGTACAGGATTTTTCATCAATTTGCCCGTGCA
. : . : . : . : . : . :
JMFN011C03+ CTGCAGCCTAATTGCACGTTATAAATGAACAAGTTTATAAAGACATATTCATCAATCATC
rJMFF001N21- CTGCAGCCTAATTGCACGTTATAAATGAACAAGTTTATAAAGACATATTCATCAATCATC
rJMFF001N19- CTGCAGCCTAATTGCACGTTATAAATGAACAAGTTTATAAAGACATATTCATCAATCATC
rJMSF013I15- CTGCAGCCTAATTGCACGTTATAAATGAACAAGTTTATGAAGACATATTCATCAATCATC
rJMSF013K15- CTGCAGCCTAATTGCACGTTATAAATGAACAAGTTTATAAAGACATATTCATCAATCATC
____________________________________________________________
consensus CTGCAGCCTAATTGCACGTTATAAATGAACAAGTTTATAAAGACATATTCATCAATCATC
. : . : . : . : . : . :
JMFN011C03+ AGCGCAACACACTTGTTTTTAGAAACACTGCAGATTAAGTTGGCCATTTAGCCGTACATT
rJMFF001N21- AGCGCAACACACTTGTTTTTAGAAACACTGCANATTAAGTTGGCCATTTANCCGTACATT
rJMFF001N19- AGCGCAACACACTTGTTTTTAGAAACACTGCAGATTAAGTTGGCCATTTAGCCGTACATT
rJMSF013I15- AGCGCAACACACTTGNTTTTAGAAACACTGCANATTAAGTTGGCCATTTAGCCGTACATT
rJMSF013K15- AGCGCAACACACTTGTTTTTAGAAACACTGCAGATTAAGTTGGCCATTTAGCCGTACATT
____________________________________________________________
consensus AGCGCAACACACTTGTTTTTAGAAACACTGCAGATTAAGTTGGCCATTTAGCCGTACATT
. : . : . : . : . : . :
JMFN011C03+ TGAGGTTACAAGTTATCACCAACATCCCTCTCAACATCATTTCAAAGAAGGGAAAGAGAA
rJMFF001N21- TGAGGTTACAAGTTAACACCAACATCCCTCTCAACATCATTTCAAAGAAGGGAAAGAGAA
rJMFF001N19- TGAGGTTACAAGTTAACACCAACATCCCTCTCAACATCATTTCAAAGAAGGGAAAGAGAA
rJMSF013I15- TGAGGTTACAAGTTATCACCANCATCCCTCTCAACATCATTTCAAAGAAGGGAAAGANAA
rJMSF013K15- TGAGGTTACAAGTTATCACCAACATCCCTCTCAACATCATTTCAAAGAAGGGAAAGAGAA
____________________________________________________________
consensus TGAGGTTACAAGTTATCACCAACATCCCTCTCAACATCATTTCAAAGAAGGGAAAGAGAA
. : . : . : . : . : . :
JMFN011C03+ CCCGTGGAATAGGAATTCTTTTTATGCAACTGAGGGCAGGTGGCACAGTAACTACCCAAG
rJMFF001N21- CCCGTGGAATAGGAATTCTTTTTATGCAACTGAGGGCAGGTGGCACAGTAACTACCCAAG
rJMFF001N19- CCCGTGGAATAGGAATTCTTTTTATGCAACTGAGGGCAGGTGGCACAGTAACTACCCAAG
rJMSF013I15- CCCGTGGAATAGGAATTCTTTTTATGCAACTGAGGGCAGGTGGCACAGNAACTACCCAAG
rJMSF013K15- CCCGTGGAATAGGAATTCTTTTTATGCAACTGAGGGCAGGTGGCACAGTAACTACCCAAG
____________________________________________________________
consensus CCCGTGGAATAGGAATTCTTTTTATGCAACTGAGGGCAGGTGGCACAGTAACTACCCAAG
. : . : . : . : . : . :
JMFN011C03+ TAATATCATCAGTAGGGCCTGTAGCGGACTGGGCCCCGCCTGAACCTTGGAACCCTCCCA
rJMFF001N21- TAATATCATCAGTAGGGCCTGTAGCGGACTGGGCCCCGCCTGAACCTTGGAACCCTCCCA
rJMFF001N19- TAATATCATCAGTAGGGCCTGTAGCGGACTGGGCCCCGCCTGAACCTTGGAACCCTCCCA
rJMSF013I15- TAATATCATCAGTAGGGCCTGTANCGGACTGGGCCCCGCCTGAACCTTGGAACCCTCCCN
rJMSF013K15- TAATATCATCAGTAGGGCCTGTAGCGGACTGGGCCCCGCCTGAACCTTGGAACCCTCCCA
____________________________________________________________
consensus TAATATCATCAGTAGGGCCTGTAGCGGACTGGGCCCCGCCTGAACCTTGGAACCCTCCCA
. : . : . : . : . : . :
JMFN011C03+ GAAGAAAAAGGAGGGAAGACCGCTCCACCTGGCACAAATGGCCTGCGTGATCGGAACCCT
rJMFF001N21- GAAGAAAAAGGAGGGAAGACCGCTCCACCTGGCACAAATGGCCTGCGTGATCGGAACCCT
rJMFF001N19- GAAGAAAAAGGAGGGAAGACCGCTCCACCTGGCACAAATGGCCTGCGTGATCGGAACCCT
rJMSF013I15- NAANANAAAGGAGGGAANACCGCTCCACCTGGCACAAATGGCCTGCGTGATCGGAACCCT
rJMSF013K15- GAAGAAAAAGGAGGGAAGACCGCTCCACCTGGCACAAATGGCCTGCGTGATCGGAACCCT
____________________________________________________________
consensus GAAGAAAAAGGAGGGAAGACCGCTCCACCTGGCACAAATGGCCTGCGTGATCGGAACCCT
. : . : . : . : . : . :
JMFN011C03+ GCATAGGGATTGAAGCGTCTACCTCGAAATTGCTTCATGCCAGGAACATTGGTTCGCTTG
rJMFF001N21- GCATAGGGATTGAAGCGTCTACCTCGAAATTGCTTCATGCCAGGAACATTGGTTCGCTTG
rJMFF001N19- GCATAGGGATTGAAGCGTCTACCTCGAAATTGCTTCATGCCAGGAACATTGGTTCGCTTG
rJMSF013I15- GCATAGGGATTGAAGCGTCTACCTCGAAATTGCTTCATGCCAGGAACATTGGTTCGCTTG
rJMSF013K15- GCATAGGGATTGAAGCGTCTACCTCGAAATTGCTTCATGCCAGGAACATTGGTTCGCTTG
JMFN007E08+ GAAATTGCTTCATGCCAGGAACATTGGTTCGCTTG
____________________________________________________________
consensus GCATAGGGATTGAAGCGTCTACCTCGAAATTGCTTCATGCCAGGAACATTGGTTCGCTTG
. : . : . : . : . : . :
JMFN011C03+ GCTGACACCTTCAATTGACGGCCATGTAGCTCTGATTCATTTAGCAACAGTGCATTTTGA
rJMFF001N21- GCTGACACCTTCAATTGACGGCCATGTAGCTCTGATTCATTTAGCAACAGTGCATTTTGA
rJMFF001N19- GCTGACACCTTCAATTGACGGCCATGTAGCTCTGATTCATTTAGCAACAGTGCATTTTGA
rJMSF013I15- GNTGACACCTTCAATTGACGGCCATGTAGCTCTGATTCATTTAGCAACAGTGCATTTTGA
rJMSF013K15- GCTGACACCTTCAATTGACGGCCATGTAGCTCTGATTCATTTAGCAACAGTGCATTTTGA
JMFN007E08+ GCTGACACCTTCAATTGACGGCCATGTAGCTCTGATTCATTTAGCAACAGTGCATTTTGA
JMFN038D09+ ACGGCCATGTAGCTCTGATTCATTTAGCAACAGTGCATTTTGA
____________________________________________________________
consensus GCTGACACCTTCAATTGACGGCCATGTAGCTCTGATTCATTTAGCAACAGTGCATTTTGA
. : . : . : . : . : . :
JMFN011C03+ ATAGCCTCAACTTCAACAAATTCCACATAAGCATAT-CCTTTAGGCTGGCCAAATTTATC
rJMFF001N21- ATAGCCTCAACTTCAACAAATTCCACATAAGCATATCCCTTTAGGCTGGCCAAATTTATC
rJMFF001N19- ATAGCCTCAACTTCAACAAATTCCACATAAGCATAT-CCTTTAGGCTGGCCAAATTTATC
rJMSF013I15- ATAACCTCANCTTCAACAAATTCCACATAAGCATAT-CCTTTAGGCTGGCCAAATTTATC
rJMSF013K15- ATAACCTCAACTTCAACAAATTCCACATAAGCATAT-CCTTTAGGCTGGCCAAATTTATC
JMFN007E08+ ATAGCCTCAACTTCAACAAATTCCACATAAGCATAT-CCTTTAGGCTGGCCAAATTTATC
JMFN038D09+ ATAGCCTCAACTTCAACAAATTCCACATAAGCATAT-CCTTTAGGCTGGCCAAATTTATC
JMFF001N19+ TGGCCAAATTTATC
____________________________________________________________
consensus ATAGCCTCAACTTCAACAAATTCCACATAAGCATAT-CCTTTAGGCTGGCCAAATTTATC
. : . : . : . : . : . :
JMFN011C03+ TGTTAAAAT
rJMFF001N21- TGTTAAAATAGTCACACGGNTCACTGTGCCACAAGACTGAAAATGCTGCTGCACTTCCTC
rJMFF001N19- TGTTAAAATAGTCACACGGTTCACTGTGCCACAAGACTGAAAATGCTGCTGCACTTCCTC
rJMSF013I15- TGTTAAAATAGTCACACGGTTCACTGTGCCACANGACTGAAAATGCTGCTGCACTTCCTC
rJMSF013K15- TGTTAAAATAGTCACACGGTTCACTGTGCCACAAGACTGAAAATGCTGCTGCACTTCCTC
JMFN007E08+ TGTTAAAATAGTCACACGGTTCACTGTGCCACAAGACTGAAAATGCTGCTGCACTTCCTC
JMFN038D09+ TGTTAAAATAGTCACACGGTTCACTGTGCCACAAGACTGAAAATGCTGCTGCACTTCCTC
JMFF001N19+ TGTTAAAATAGTCACACGGTTCACTGTGCCACAAGACTGAAAATGCTGCTGCACTTCCTC
____________________________________________________________
consensus TGTTAAAATAGTCACACGGTTCACTGTGCCACAAGACTGAAAATGCTGCTGCACTTCCTC
. : . : . : . : . : . :
rJMFF001N21- TGGTGTGCA
rJMFF001N19- TGGTGTGCAGGCATANTCCACATTACCAACATAGATTGAACGGGCATCCACCT
rJMSF013I15- TGGTGTGCAGGCATAGTCCACATTACCAACATAGATTGAACGGGCNTCCACCTCCTCCTT
rJMSF013K15- TGGTGTGCAGGCATAGTCCACATTACCAACATAGATTGAACGGGCATCCACCTCCTCCTT
JMFN007E08+ TGGTGTGCAGGCATAGTCCACATTACCAACATAGATTGAACGGGCATCCACCTCCTCCTT
JMFN038D09+ TGGTGTGCAGGCATAGTCCACATTACCAACATAGATTGAACGGGCATCCACCTCCTCCTT
JMSF013K15+ T
JMFF001N19+ TGGTGTGCAGGCATAGTCCACATTACCAACATAGATTGAACGGGCATCCACCTCCTCCTT
____________________________________________________________
consensus TGGTGTGCAGGCATAGTCCACATTACCAACATAGATTGAACGGGCATCCACCTCCTCCTT
. : . : . : . : . : . :
rJMSF013I15- CTCAGNCTGACTG
rJMSF013K15- CTCAGCCTGACTGGCAGAAGCAGCATTTGGATCTTGAACACCGGTCATTTCTTTCTCG
JMFN007E08+ CTCAGCCTGACTGGCAGAAGCAGCATTTGGATCTTGAACACCGGTCATTTCTTTCTCGAC
JMFN038D09+ CTCAGCCTGACTGGCAGAAGCAGCATTTGGATCTTGAACACCGGTCATTTCTTTCTCGAC
JMSF013K15+ CTCAGCCTGACTGGCAGAAGCAGCATTTGGATCTTGAACACCGGTCATTTCTTTCTCGAC
JMFF001N19+ CTCAGCCTGACTGGCAGAAGCAGCATTTGGATCTTGAACACCGGTCATTTCTTTCTCGAC
____________________________________________________________
consensus CTCAGCCTGACTGGCAGAAGCAGCATTTGGATCTTGAACACCGGTCATTTCTTTCTCGAC
. : . : . : . : . : . :
JMFN007E08+ TTTGGCCTGCATTTCGCGCAAGGCACCTGCTTCCTCCTCAATCTCCTTCAGCCGCTTCTT
JMFN038D09+ TTTGGCCTGCATTTCGCGCAAGGCACCTGCTTCCTCCTCAATCTCCTTCAGCCGCTTCTT
JMSF013K15+ TTTGGCCTGCATTTCGCGCAAGGCACCTGCTTCCTCCTCAATCTCCTTCAGCCGCTTCTT
JMFF001N19+ TTTGGCCTGCATTTCGCGCAAGGCACCTGCTTCCTCCTCAATCTCCTTCAGCCGCTTCTT
____________________________________________________________
consensus TTTGGCCTGCATTTCGCGCAAGGCACCTGCTTCCTCCTCAATCTCCTTCAGCCGCTTCTT
. : . : . : . : . : . :
JMFN007E08+ CATGTTCTCCAAATCCTGTTTAGCATTAGGATCTTCCTGAGCTTCGGCTTCAGCGAGAGC
JMFN038D09+ CATGTTCTCCAAATC---TTTAGCATTAGGATCTTCCTGAGCTTCGGCTTCAGCGAGAGC
JMSF013K15+ CATGTTCTCCAAATC---TTTAGCATTAGGATCTTCCTGAGCTTCGGCTTCAGCGAGAGC
JMFF001N19+ CATGTTCTCCAAATCCTGTTTAGCATTAGGATCTTCCTGAGCTTCGGCTTCAGCGAGAGC
____________________________________________________________
consensus CATGTTCTCCAAATCCTGTTTAGCATTAGGATCTTCCTGAGCTTCGGCTTCAGCGAGAGC
. : . : . : . : . : . :
JMFN007E08+ TGCCATGTCGACATCGGCATCCATGTCTCCTTCTTCGGGAAATTCTCCTCCGTAAACATC
JMFN038D09+ TGCCATGTCGACATCGGCATCCATGTCTCCTTCTTCGGGAAATTCTCCTCCGTAAACATC
JMSF013K15+ TGCCATGTCGACATCGGCATCCATGTCTCCTTCTTCGGGAAATTCTCCTCCGTAAACATC
JMFF001N19+ TGCCATGTCGACATCGGCATCCATGTCTCCTTCTTCGGGAAATTCTCCTCCGTAAACATC
____________________________________________________________
consensus TGCCATGTCGACATCGGCATCCATGTCTCCTTCTTCGGGAAATTCTCCTCCGTAAACATC
. : . : . : . : . : . :
JMFN007E08+ TTCTTCCTGCTCCGGATTCTCCATTCTCTATCTATATATATTGACTAGTATTCACAATTG
JMFN038D09+ TTCTTCCTGCTCCGGATTCTCCATTCTCTATCTATATATATTGACTAGTATTCACAATTG
JMSF013K15+ TTCTTCCTGCTCCGGATTCTCCATTCTCTATCTATATATATTGACTAGTATTCACAATTG
JMFF001N19+ TTCTTCCTGCTCCGGATTCTCCATTCTCTATCTATATATATTGACTAGTATTCACAATTG
____________________________________________________________
consensus TTCTTCCTGCTCCGGATTCTCCATTCTCTATCTATATATATTGACTAGTATTCACAATTG
. : . : . : . : . : . :
JMFN007E08+ AGTTCCACCGAATATGCTTCGGAGATGTAGATATGCGCGTATATGTACAGAAATGGAGGC
JMFN038D09+ AGTTCCACCGAATATGCTTCGGAGATGTAGATATGCGCGTATATGTACAGAAATGGAGGC
JMSF013K15+ AGTTCCACCGAATATGCTTCGGAGATGTAGATATGCGCGTATATGTACAGAAATGGAGGC
JMFF001N19+ AGTTCCACCGAGTATGCTTCGGAGATGTAGATATGCGCGTATATGTACAGAAATGGAGGC
____________________________________________________________
consensus AGTTCCACCGAATATGCTTCGGAGATGTAGATATGCGCGTATATGTACAGAAATGGAGGC
. : . : . : . : . : . :
JMFN007E08+ AAAT
JMFN038D09+ AAATTTTGAGCTTTATTTTCTAGGTTTTC
JMSF013K15+ AAATTTTGAGCTTTATTTTCTAGGTTTTCGTAAGCTTTGCGCGAGAGAATTGGGG
JMFF001N19+ AAATTTTGAGCTTTATTTTCTAGGTTTTCGTAAGCTTTGCGCGAGAGAATTGGGGACAGG
____________________________________________________________
consensus AAATTTTGAGCTTTATTTTCTAGGTTTTCGTAAGCTTTGCGCGAGAGAATTGGGGACAGG