clone | seq. | 5'-sequence | 3'-sequence | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
JMSF004D20 | Sequence | 333 | 011274 (12) | emb|CDP12179.1| | 2e-20 | unnamed protein product [Coffea canephora] | |||||
JMSF012G23 | Sequence | 239 | 011274 (12) | emb|CDP12179.1| | 6e-10 | unnamed protein product [Coffea canephora] | 722 | 011274 (12) | ref|XP_004245503.1| | 2e-47 | PREDICTED: RNA polymerase II transcriptional coactivator KELP [Solanum lycopers |
JMSF013D19 | Sequence | 473 | 011274 (12) | emb|CDP12179.1| | 7e-24 | unnamed protein product [Coffea canephora] | 729 | 011274 (12) | ref|XP_009631788.1| | 6e-64 | PREDICTED: RNA polymerase II transcriptional coactivator KELP [Nicotiana toment |
JMSF038H24 | Sequence | 698 | 011274 (12) | ref|XP_009631788.1| | 3e-64 | PREDICTED: RNA polymerase II transcriptional coactivator KELP [Nicotiana toment | 757 | 011274 (12) | emb|CDP12179.1| | 2e-63 | unnamed protein product [Coffea canephora] |
JMSF039P21 | Sequence | 687 | 011274 (12) | emb|CDP12179.1| | 6e-64 | unnamed protein product [Coffea canephora] | 770 | 011274 (12) | emb|CDP12179.1| | 1e-63 | unnamed protein product [Coffea canephora] |
JMSF047B14 | Sequence | 718 | 011274 (12) | ref|XP_009631788.1| | 5e-64 | PREDICTED: RNA polymerase II transcriptional coactivator KELP [Nicotiana toment | 736 | 011274 (12) | ref|XP_009631788.1| | 7e-64 | PREDICTED: RNA polymerase II transcriptional coactivator KELP [Nicotiana toment |
Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.
SCORE============================================Contig011274============================================ 905 32 -------------------------->JMSF012G23 <-----------------------------------------------------------------------------rJMSF012G23 80 ------------------------------------------------------------------------------>JMSF047B14 <---------------------------------------------------------------------------------rJMSF047B14 103 --------------------------------------------------->JMSF013D19 <--------------------------------------------------------------------------------rJMSF013D19 133 --------------------------------------------------------------------------->JMSF039P21 <------------------------------------------------------------------------------------rJMSF039P21 153 ---------------------------------------------------------------------------->JMSF038H24 <-------------------------------------------------------------------------------rJMSF038H24
The following clones don't have the opposite end in this pair.
<-----------------------------------------------rJMSF004B18* ------------------------------------>JMSF004D20-