Contig 011274:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004B18Sequence209002167 (43)434011274 (12)ref|XP_009631788.1|1e-40PREDICTED: RNA polymerase II transcriptional coactivator KELP [Nicotiana toment
JMSF004D20Sequence333011274 (12)emb|CDP12179.1|2e-20unnamed protein product [Coffea canephora]
JMSF012G23Sequence239011274 (12)emb|CDP12179.1|6e-10unnamed protein product [Coffea canephora]722011274 (12)ref|XP_004245503.1|2e-47PREDICTED: RNA polymerase II transcriptional coactivator KELP [Solanum lycopers
JMSF013D19Sequence473011274 (12)emb|CDP12179.1|7e-24unnamed protein product [Coffea canephora]729011274 (12)ref|XP_009631788.1|6e-64PREDICTED: RNA polymerase II transcriptional coactivator KELP [Nicotiana toment
JMSF038H24Sequence698011274 (12)ref|XP_009631788.1|3e-64PREDICTED: RNA polymerase II transcriptional coactivator KELP [Nicotiana toment757011274 (12)emb|CDP12179.1|2e-63unnamed protein product [Coffea canephora]
JMSF039P21Sequence687011274 (12)emb|CDP12179.1|6e-64unnamed protein product [Coffea canephora]770011274 (12)emb|CDP12179.1|1e-63unnamed protein product [Coffea canephora]
JMSF047B14Sequence718011274 (12)ref|XP_009631788.1|5e-64PREDICTED: RNA polymerase II transcriptional coactivator KELP [Nicotiana toment736011274 (12)ref|XP_009631788.1|7e-64PREDICTED: RNA polymerase II transcriptional coactivator KELP [Nicotiana toment

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF004D20-                                                                  GACAA
                      ____________________________________________________________
consensus                                                                    GACAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF004D20-           AACCGGTAAAGGAGCAATTCCTAGGTTAGACCTCTCTGGACTCTGTCTCTCTGTACGCGA
JMSF012G23-                                      AGACCTCTCTGGACTCTGTCTCTCTGTACGCGA
JMSF013D19-                  AAAGGAGCAATTCCTAGGTTAGACCTCTCTGGACTCTGTCTCTCTGTACGCGA
JMSF047B14-                  AAAGGAGCAATTCCTAGGTTAGACCTCTCTGGACTCTGTCTCTCTGTACGCGA
JMSF038H24-                                              CTGGACTCTGTCTCTCTGTACGCGA
JMSF039P21-                                                GGACTCTGTCTCTCTGTACGCGA
rJMSF039P21+                                               GGACTCTGTCTCTCTGTACGCGA
                      ____________________________________________________________
consensus             AACCGGTAAAGGAGCAATTCCTAGGTTAGACCTCTCTGGACTCTGTCTCTCTGTACGCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF004D20-           TTCTGCAGCTGCGACTGCTCT-CCCGGCCTTCAATCTTCCAGAATCAGAAATACAGAAGC
JMSF012G23-           TTCTGCAGCTGCGACTGCTCT-CCCGGCCTTCAATCTTCCAGAATCAGAAATACAGAAGC
JMSF013D19-           TTCTGCAGCTGCGACTGCTCT-CCCGGCCTTCAATCTTCCAGAATCAGAAATACAGAAGC
JMSF047B14-           TTCTGCAGCTGCGACTGCTCT-CCCGGCCTTCAATCTTCCAGAATCAGAAATACAGAAGC
JMSF038H24-           TTCTGCAGCTGCGACTGCTCT-CCCGGCCTTCAATCTTCCAGAATCAGAAATACAGAAGC
rJMSF038H24+          TTCTGCAGCTGCGACTGCTCTCCCCGGCCTTCAATCTTCCAGAATCAGAAATACAGAAGC
JMSF039P21-           TTCTGCAGCTGCGACTGCTCT-CCCGGCCTTCAATCTTCCAGAATCAGAAATACAGAAGC
rJMSF039P21+          TTCTGCAGCTGCGACTGCTCT-CCCGGCCTTCAATCTTCCAGAATCAGAAATACAGAAGC
rJMSF013D19+                            TCT-CCCGGCCTTCAATCTTCCAGAATCAGAAATACAGAAGC
rJMSF047B14+                                            TCTTCCAGAATCAGAAATACAGAAGC
                      ____________________________________________________________
consensus             TTCTGCAGCTGCGACTGCTCT-CCCGGCCTTCAATCTTCCAGAATCAGAAATACAGAAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF004D20-           GGCGAATTCAAATTATTAAGCAAAATCATGGATGCTGAAACAGAAACCACAATCTCTGAA
JMSF012G23-           GGCGAATTCAAATTATTAAGCAAAATCATGGATGCTGAAACAGAAACCACAATCTCTGAA
JMSF013D19-           GGCGAATTCAAATTATTAAGCAAAATCATGGATGCTGAAACAGAAACCACAATCTCTGAA
JMSF047B14-           GGCGAATTCAAATTATTAAGCAAAATCATGGATGCTGAAACAGAAACCACAATCTCTGAA
JMSF038H24-           GGCGAATTCAAATTATTAAGCAAAATCATGGATGCTGAAACAGAAACCACAATCTCTGAA
rJMSF038H24+          GGCGAATTCAAATTATTAAGCAAAATCATGGATGCTGAAACAGAAACCACAATCTCTGAA
JMSF039P21-           GGCGAATTCAAATTATTAAGCAAAATCATGGATGCTGAAACAGAAACCACAATCTCTGAA
rJMSF039P21+          GGCGAATTCAAATTATTAAGCAAAATCATGGATGCTGAAACAGAAACCACAATCTCTGAA
rJMSF013D19+          GGCGAATTCAAATTATTAAGCAAAATCATGGATGCTGAAACAGAAACCACAATCTCTGAA
rJMSF047B14+          GGCGAATTCAAATTATTAAGCAAAATCATGGATGCTGAAACAGAAACCACAATCTCTGAA
                      ____________________________________________________________
consensus             GGCGAATTCAAATTATTAAGCAAAATCATGGATGCTGAAACAGAAACCACAATCTCTGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF004D20-           ACAGTTTTGGAGATCCTAAAATCCTCAAACATGGACGAAATCACGGAGTTCATGGTCCGT
JMSF012G23-           ACAGTTTTGGAGATCCTAAAATCCTCAAACATGGACGAAATCACGGAGTTCATGGTCCGT
JMSF013D19-           ACAGTTTTGGAGATCCTAAAATCCTCAAACATGGACGAAATCACGGAGTTCATGGTCCGT
JMSF047B14-           ACAGTTTTGGAGATCCTAAAATCCTCAAACATGGACGAAATCACGGAGTTCATGGTCCGT
JMSF038H24-           ACAGTTTTGGAGATCCTAAAATCCTCAAACATGGACGAAATCACGGAGTTCATGGTCCGT
rJMSF038H24+          ACAGTTTTGGAGATCCTAAAATCCTCAAACATGGACGAAATCACGGAGTTCATGGTCCGT
JMSF039P21-           ACAGTTTTGGAGATCCTAAAATCCTCAAACATGGACGAAATCACGGAGTTCATGGTCCGT
rJMSF039P21+          ACAGTTTTGGAGATCCTAAAATCCTCAAACATGGACGAAATCACGGAGTTCATGGTCCGT
rJMSF013D19+          ACAGTTTTGGAGATCCTAAAATCCTCAAACATGGACGAAATCACGGAGTTCATGGTCCGT
rJMSF047B14+          ACAGTTTTGGAGATCCTAAAATCCTCAAACATGGACGAAATCACGGAGTTCATGGTCCGT
rJMSF012G23+                           AAAATCCTCAAACATGGACGAAATCACGGAGTTCATGGTCCGT
                      ____________________________________________________________
consensus             ACAGTTTTGGAGATCCTAAAATCCTCAAACATGGACGAAATCACGGAGTTCATGGTCCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF004D20-           AAAT-CCGCATCTGAGAAGCTAGGTATGGACCTCTCCCAACCGATTCATAAGAAGTTTGT
JMSF012G23-           AAAT-CCGCATCTGAGAGGCTAGGTAT                                 
JMSF013D19-           AAAT-CCGCATCTGAGAAGCTAGGTATGGACCTCTCCCAACCGATTCATAAGAAGTTTGT
JMSF047B14-           AAAT-CCGCATCTGAGAAGCTAGGTATGGACCTCTCCCAACCGATTCATAAGAAGTTTGT
JMSF038H24-           AAAT-CCGCATCTGAGAAGCTAGGTATGGACCTCTCCCAACCGATTCATAAGAAGTTTGT
rJMSF038H24+          AAAT-CCGCATCTGAGAAGCTAGGTATGGACCTCTCCCAACCGATTCATAAGAAGTTTGT
JMSF039P21-           AAAT-CCGCATCTGAGAAGCTAGGTATGGACCTCTCCCAACCGATTCATAAGAAGTTTGT
rJMSF039P21+          AAAT-CCGCATCTGAGAAGCTAGGTATGGACCTCTCCCAACCGATTCATAAGAAGTTTGT
rJMSF013D19+          AAAT-CCGCATCTGAGAAGCTAGGTATGGACCTCTCCCAACCGATTCATAAGAAGTTTGT
rJMSF047B14+          AAAT-CCGCATCTGAGAAGCTAGGTATGGACCTCTCCCAACCGATTCATAAGAAGTTTGT
rJMSF012G23+          AAATCCCGCATCTGAGAGGCTAGGTATGGACCTCTCCCAACCGATTCATAAGAAGTTTGT
                      ____________________________________________________________
consensus             AAAT-CCGCATCTGAGAAGCTAGGTATGGACCTCTCCCAACCGATTCATAAGAAGTTTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF004D20-           TCGCAAGGTCGTCGAGTCGTACCTCGCCGA                              
JMSF013D19-           TCGCAAGGTCGTCGAGTCGTACCTCGCCGAGCAACAGGAAAAAGCTGAGCAAAAAGAGGA
JMSF047B14-           TCGCAAGGTCGTCGAGTCGTACCTCGCCGAGCAACAGGAAAAAGCTGAGCAAAAAGAGGA
JMSF038H24-           TCGCAAGGTCGTCGAGTCGTACCTCGCCGAGCAACAGGAAAAAGCTGAGCAAAAAGAGGA
rJMSF038H24+          TCGCAAGGTCGTCGAGTCGTACCTCGCCGAGCAACAGGAAAAAGCTGAGCAAAAAGAGGA
JMSF039P21-           TCGCAAGGTCGTCGAGTCGTACCTCGCCGAGCAACAGGAAAAAGCTGAGCAAAAAGAGGA
rJMSF039P21+          TCGCAAGGTCGTCGAGTCGTACCTCGCCGAGCAACAGGAAAAAGCTGAGCAAAAAGAGGA
rJMSF013D19+          TCGCAAGGTCGTCGAGTCGTACCTCGCCGAGCAACAGGAAAAAGCTGAGCAAAAAGAGGA
rJMSF047B14+          TCGCAAGGTCGTCGAGTCGTACCTCGCCGAGCAACAGGAAAAAGCTGAGCAAAAAGAGGA
rJMSF012G23+          TCGCAAGGTCGTCGAGTCGTACCTCGCCGAGCAACAGGAAAAAGCTGAGCAAAAAGAGGA
                      ____________________________________________________________
consensus             TCGCAAGGTCGTCGAGTCGTACCTCGCCGAGCAACAGGAAAAAGCTGAGCAAAAAGAGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF013D19-           CGAAGAAGGGGAGGAGGAGGAGGAGGAGGAAGAATCCGAGGATGAGAAAAAGCCCCGCCA
JMSF047B14-           CGAAGAAGGGGAGGAGGAGGAGGAGGAGGAAGAATCCGAGGATGAGAAAAAGCCCCGCCA
JMSF038H24-           CGAAGAAGGGGAGGAGGAGGAGGAGGAGGAAGAATCCGAGGATGAGAAAAAGCCCCGCCA
rJMSF038H24+          CGAAGAAGGGGAGGAGGAGGAGGAGGAGGAAGAATCCGAGGATGAGAAAAAGCCCCGCCA
JMSF039P21-           CGAAGAAGGGGAGGGGGAGGAGGAGGAGGAAGAATCCGAGGATGAGAAAAAGCCCCGCCA
rJMSF039P21+          CGAAGAAGGGGAGGGGGAGGAGGAGGAGGAAGAATCCGAGGATGAGAAAAAGCCCCGCCA
rJMSF013D19+          CGAAGAAGGGGAGGAGGAGGAGGAGGAGGAAGAATCCGAGGATGAGAAAAAGCCCCGCCA
rJMSF047B14+          CGAAGAAGGGGAGGAGGAGGAGGAGGAGGAAGAATCCGAGGATGAGAAAAAGCCCCGCCA
rJMSF004B18+                                               GAGGATGAGAAAAAGCCCCGCCA
rJMSF012G23+          CGAAGAAGGGGAGGAGGAGGAGGAGGAGGAAGAATCCGAGGATGAGAAAAAGCCCCGCCA
                      ____________________________________________________________
consensus             CGAAGAAGGGGAGGAGGAGGAGGAGGAGGAAGAATCCGAGGATGAGAAAAAGCCCCGCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF013D19-           TGGTGACGGCGGATCCACCAAAGAGTACGATGACGACGGTGACCTCATTATTTGCCGATT
JMSF047B14-           TGGTGACGGCGGATCCACCAAAGAGTACGATGACGACGGTGACCTCATTATTTGCCGATT
JMSF038H24-           TGGTGACGGCGGATCCACCAAAGAGTACGATGACGACGGTGACCTCATTATTTGCCGATT
rJMSF038H24+          TGGTGACGGCGGATCCACCAAAGAGTACGATGACGACGGTGACCTCATTATTTGCCGATT
JMSF039P21-           TGGTGACGGCGGATCCACCAAAGAGTACGATGACGACGGTGACCTCATTATTTGCCGATT
rJMSF039P21+          TGGTGACGGCGGATCCACCAAAGAGTACGATGACGACGGTGACCTCATTATTTGCCGATT
rJMSF013D19+          TGGTGACGGCGGATCCACCAAAGAGTACGATGACGACGGTGACCTCATTATTTGCCGATT
rJMSF047B14+          TGGTGACGGCGGATCCACCAAAGAGTACGATGACGACGGTGACCTCATTATTTGCCGATT
rJMSF004B18+          TGGTGACGGCGGATCCACCAAAGAGTACGATGACGACGGTGACCTCATTATTTGCCGATT
rJMSF012G23+          TGGTGACGGCGGATCCACCAAAGAGTACGATGACGACGGTGACCTCATTATTTGCCGATT
                      ____________________________________________________________
consensus             TGGTGACGGCGGATCCACCAAAGAGTACGATGACGACGGTGACCTCATTATTTGCCGATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF013D19-           G                                                           
JMSF047B14-           GAATAAGAAGAGAAGGGTGACAATAACTGATTTTAGAGGGAAGACTTTGGTGTCCTTAAG
JMSF038H24-           GAATAAGAAGAGAAGGGTGACAATAACTGATTTTAGAGGGAAGACTTTGGTGTCCTTAAG
rJMSF038H24+          GAATAAGAAGAGAAGGGTGACAATAACTGATTTTAGAGGGAAGACTTTGGTGTCCTTAAG
JMSF039P21-           GAATAAGAAGAGAAGGGTGACAATAACTGATTTTAGAGGGAAGACTTTGGTGTCCTTAAG
rJMSF039P21+          GAATAAGAAGAGAAGGGTGACAATAACTGATTTTAGAGGGAAGACTTTGGTGTCCTTAAG
rJMSF013D19+          GAATAAGAAGAGAAGGGTGACAATAACTGATTTTAGAGGGAAGACTTTGGTGTCCTTAAG
rJMSF047B14+          GAATAAGAAGAGAAGGGTGACAATAACTGATTTTAGAGGGAAGACTTTGGTGTCCTTAAG
rJMSF004B18+          GAATAAGAAGAGAAGGGTGACAATAACTGATTTTAGAGGGAAGACTTTGGTGTCCTTAAG
rJMSF012G23+          GAATAAGAAGAGAAGGGTGACAATAACTGATTTTAGAGGGAAGACTTTGGTGTCCTTAAG
                      ____________________________________________________________
consensus             GAATAAGAAGAGAAGGGTGACAATAACTGATTTTAGAGGGAAGACTTTGGTGTCCTTAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047B14-           GGAATACTACTGGAAAGATGGAAAAGAGCTTCCTACATCTAAAGGAATAAGCTTGACTGC
JMSF038H24-           GGAATACTACTGGAAAGATGGAAAAGAGCTTCCTACATCTAAAGGAATAAGCTTGACTGC
rJMSF038H24+          GGAATACTACTGGAAAGATGGAAAAGAGCTTCCTACATCTAAAGGAATAAGCTTGACTGC
JMSF039P21-           GGAATACTACTGGAAAGATGGAAAAGAGCTTCCTACATCTAAAGGAATAAGCTTGACTGC
rJMSF039P21+          GGAATACTACTGGAAAGATGGAAAAGAGCTTCCTACATCTAAAGGAATAAGCTTGACTGC
rJMSF013D19+          GGAATACTACTGGAAAGATGGAAAAGAGCTTCCTACATCTAAAGGAATAAGCTTGACTGC
rJMSF047B14+          GGAATACTACTGGAAAGATGGAAAAGAGCTTCCTACATCTAAAGGAATAAGCTTGACTGC
rJMSF004B18+          GGAATACTACTGGAAAGATGGAAAAGAGCTTCCTACATCTAAAGGAATAAGCTTGACTGC
rJMSF012G23+          GGAATACTACTGGAAAGATGGAAAAGAGCTTCCTACATCTAAAGGAATAAGCTTGACTGC
                      ____________________________________________________________
consensus             GGAATACTACTGGAAAGATGGAAAAGAGCTTCCTACATCTAAAGGAATAAGCTTGACTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047B14-           CGAGCAATGGGCATCATTCATGAAGAACCTTCCCGCAATTGATAAAGCTATCAAGAAAAT
JMSF038H24-           CGAGCAATGGGCATCATTCATGAAGAACCTTCCCGCAATTGATAAAGCTATCAAGAAAAT
rJMSF038H24+          CGAGCAATGGGCATCATTCATGAAGAACCTTCCCGCAATTGATAAAGCTATCAAGAAAAT
JMSF039P21-           CGAGCAATGGGCATCATTCATGAAGAACCTTCCCGCAATTGATAAAGCTATCAAGAAAAT
rJMSF039P21+          CGAGCAATGGGCATCATTCATGAAGAACCTTCCCGCAATTGATAAAGCTATCAAGAAAAT
rJMSF013D19+          CGAGCAATGGGCATCATTCATGAAGAACCTTCCCGCAATTGATAAAGCTATCAAGAAAAT
rJMSF047B14+          CGAGCAATGGGCATCATTCATGAAGAACCTTCCCGCAATTGATAAAGCTATCAAGAAAAT
rJMSF004B18+          CGAGCAATGGGCATCATTCATGAAGAACCTTCCCGCAATTGATAAAGCTATCAAGAAAAT
rJMSF012G23+          CGAGCAATGGGCATCATTCATGAAGAACCTTCCCGCAATTGATAAAGCTATCAAGAAAAT
                      ____________________________________________________________
consensus             CGAGCAATGGGCATCATTCATGAAGAACCTTCCCGCAATTGATAAAGCTATCAAGAAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047B14-           GGAATCGAGGGTAGATTGAGGTGGTCGGTTCTATTAGTAATAGAACCATGTATCCATGTT
JMSF038H24-           GGAATCGAGGGTAGATTGAGGTGGTCGGTTCTATTAGTAATAGAACCATGTATCCNTGTT
rJMSF038H24+          GGAATCGAGGGTAGATTGAGGTGGTCGGTTCTATTAGTAATAGAACCATGTATCCATGTT
JMSF039P21-           GGAATCGAGGGTAGATTGAGGTGGTCGGTTCTATTAGTAATAGAACCATGTATCCNTGTT
rJMSF039P21+          GGAATCGAGGGTAGATTGAGGTGGTCGGTTCTATTAGTAATAGAACCATGTATCCATGTT
rJMSF013D19+          GGAATCGAGGGTAGATTGAGGTGGTCGGTTCTATTAGTAATAGAACCATGTATCCATGTT
rJMSF047B14+          GGAATCGAGGGTAGATTGAGGTGGTCGGTTCTATTAGTAATAGAACCATGTATCCATGTT
rJMSF004B18+          GGAATCGAGGGTAGATTGAGGTGGTCGGTTCTATTAGTAATAGAACCATGTATCCATGTT
rJMSF012G23+          GGAATCGAGGGTAGATTGAGGTGGTCGGTTCTATTAGTAATAGAACCATGTATCCATGTT
                      ____________________________________________________________
consensus             GGAATCGAGGGTAGATTGAGGTGGTCGGTTCTATTAGTAATAGAACCATGTATCCATGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047B14-           CTTTCA                                                      
JMSF038H24-           CTTTCACTATGGT                                               
rJMSF038H24+          CTTTCACTATGGTTCTTAGAACAGTATGGGTAATATATGTCCAGCCATTTGCTCCCTGCT
JMSF039P21-           CTTTC                                                       
rJMSF039P21+          CTTTCACTATGGTTCTTAGAACAGTATGGGTAATATATGTCCAGCCATTTGCTCCCTGCT
rJMSF013D19+          CTTTCACTATGGTTCTTAGAACAGTATGGGTAATATATGTCCAGCCATTTGCTCCCTGCT
rJMSF047B14+          CTTTCACTATGGTTCTTAGAACAGTATGGGTAATATATGTCCAGCCATTTGCTCCCTGCT
rJMSF004B18+          CTTTCACTATGGTTCTTAGAACAGTATGGGTAATATATGTCCAGCCATTTGCTCCCTGCT
rJMSF012G23+          CTTTCACTATGGTTCTTAGAACAGTATGGGTAATATATGTCCAGCCATTTGCTCCCTGCT
                      ____________________________________________________________
consensus             CTTTCACTATGGTTCTTAGAACAGTATGGGTAATATATGTCCAGCCATTTGCTCCCTGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038H24+          TCTTTAA                                                     
rJMSF039P21+          TCTTTAA-CTGGTTCCCAGAGCAGTACTT                               
rJMSF013D19+          TCTTTAACCTGGTTCCCAGAGCAGTACTT                               
rJMSF047B14+          TCTTTAA-CTGGTTCCCAGAGCAGTACTTTGTTCTCTAAGTGGGTACATATC        
rJMSF004B18+          TCTTTAA-CTGGTTCCCAGAGCAGTACTTTGTTCTCTAAGTGGGTACATATC        
rJMSF012G23+          TCTTTAA-CTGGTTCCCAGAGCAGTACTTTGTTCTCTAAGTGGGTACATATCATGGTTTT
                      ____________________________________________________________
consensus             TCTTTAA-CTGGTTCCCAGAGCAGTACTTTGTTCTCTAAGTGGGTACATATCATGGTTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012G23+          TCAGTCATGCCAAATGAACTAGTATGCCATGTTCCATTCTCTTCCATTGTGTGTGTGATA
                      ____________________________________________________________
consensus             TCAGTCATGCCAAATGAACTAGTATGCCATGTTCCATTCTCTTCCATTGTGTGTGTGATA