clone | seq. | 5'-sequence | 3'-sequence | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
JMFF021K10 | Sequence | 233 | 000795 (13) | ref|XP_010690297.1| | 1e-24 | PREDICTED: 60S ribosomal protein L35a-3 [Beta vulgaris subsp. vulgaris] | |||||
JMFF038C24 | Sequence | 594 | 000795 (13) | ref|XP_009590569.1| | 1e-69 | PREDICTED: 60S ribosomal protein L35a-3 [Nicotiana tomentosiformis] ref|XP_00960 | |||||
JMFF050O16 | Sequence | 103 | 000795 (13) | 554 | 000795 (13) | ref|XP_009590569.1| | 5e-70 | PREDICTED: 60S ribosomal protein L35a-3 [Nicotiana tomentosiformis] ref|XP_00960 | |||
JMFN015D05 | Sequence | 607 | 000795 (13) | ref|XP_009590569.1| | 5e-70 | PREDICTED: 60S ribosomal protein L35a-3 [Nicotiana tomentosiformis] ref|XP_00960 | |||||
JMFN044J08 | Sequence | 530 | 000795 (13) | ref|XP_009590569.1| | 3e-70 | PREDICTED: 60S ribosomal protein L35a-3 [Nicotiana tomentosiformis] ref|XP_00960 | |||||
JMSF027N04 | Sequence | 577 | 000795 (13) | ref|XP_009590569.1| | 1e-69 | PREDICTED: 60S ribosomal protein L35a-3 [Nicotiana tomentosiformis] ref|XP_00960 | 516 | 000795 (13) | ref|XP_009590569.1| | 2e-68 | PREDICTED: 60S ribosomal protein L35a-3 [Nicotiana tomentosiformis] ref|XP_00960 |
JMSF028G20 | Sequence | 645 | 000795 (13) | ref|XP_009590569.1| | 4e-69 | PREDICTED: 60S ribosomal protein L35a-3 [Nicotiana tomentosiformis] ref|XP_00960 | 597 | 000795 (13) | ref|XP_009590569.1| | 2e-69 | PREDICTED: 60S ribosomal protein L35a-3 [Nicotiana tomentosiformis] ref|XP_00960 |
JMSF031B09 | Sequence | 639 | 000795 (13) | ref|XP_009766547.1| | 4e-69 | PREDICTED: 60S ribosomal protein L35a-3-like [Nicotiana sylvestris] | 585 | 000795 (13) | ref|XP_009766547.1| | 2e-69 | PREDICTED: 60S ribosomal protein L35a-3-like [Nicotiana sylvestris] |
JMSF048C14 | Sequence | 573 | 000795 (13) | ref|XP_009590569.1| | 1e-69 | PREDICTED: 60S ribosomal protein L35a-3 [Nicotiana tomentosiformis] ref|XP_00960 |
Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.
SCORE============================================Contig000795============================================ 601 5 -------------------------------------------------------------------->JMSF028G20 <-------------------------------------------------------------------------------------------------rJMSF028G20 24 ------------------------------------------------------------------->JMSF031B09 <-----------------------------------------------------------------------------------------------rJMSF031B09 44 ---------------->JMFF050O16 <---------------------------------------------------------------------------------------rJMFF050O16 85 --------------------------------------------------------------------------------------------->JMSF027N04 <-------------------------------------------------------------------------------------rJMSF027N04
The following clones don't have the opposite end in this pair.
<--------------------------------------rJMFF021K10- -------------------------------------------------------------------------------------------->JMSF048C14- ---------------------------------------------------------------------------------------->JMFN044J08- -------------------------------------------------------------------------------------------------->JMFF038C24- ------------------------------------------------------------------>JMFN015D05-