| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF021K10 | Sequence | 233 | 000795 (13) | ref|XP_010690297.1| | 1e-24 | PREDICTED: 60S ribosomal protein L35a-3 [Beta vulgaris subsp. vulgaris] | |||||
| JMFF038C24 | Sequence | 594 | 000795 (13) | ref|XP_009590569.1| | 1e-69 | PREDICTED: 60S ribosomal protein L35a-3 [Nicotiana tomentosiformis] ref|XP_00960 | |||||
| JMFF050O16 | Sequence | 103 | 000795 (13) | 554 | 000795 (13) | ref|XP_009590569.1| | 5e-70 | PREDICTED: 60S ribosomal protein L35a-3 [Nicotiana tomentosiformis] ref|XP_00960 | |||
| JMFN015D05 | Sequence | 607 | 000795 (13) | ref|XP_009590569.1| | 5e-70 | PREDICTED: 60S ribosomal protein L35a-3 [Nicotiana tomentosiformis] ref|XP_00960 | |||||
| JMFN044J08 | Sequence | 530 | 000795 (13) | ref|XP_009590569.1| | 3e-70 | PREDICTED: 60S ribosomal protein L35a-3 [Nicotiana tomentosiformis] ref|XP_00960 | |||||
| JMSF027N04 | Sequence | 577 | 000795 (13) | ref|XP_009590569.1| | 1e-69 | PREDICTED: 60S ribosomal protein L35a-3 [Nicotiana tomentosiformis] ref|XP_00960 | 516 | 000795 (13) | ref|XP_009590569.1| | 2e-68 | PREDICTED: 60S ribosomal protein L35a-3 [Nicotiana tomentosiformis] ref|XP_00960 |
| JMSF028G20 | Sequence | 645 | 000795 (13) | ref|XP_009590569.1| | 4e-69 | PREDICTED: 60S ribosomal protein L35a-3 [Nicotiana tomentosiformis] ref|XP_00960 | 597 | 000795 (13) | ref|XP_009590569.1| | 2e-69 | PREDICTED: 60S ribosomal protein L35a-3 [Nicotiana tomentosiformis] ref|XP_00960 |
| JMSF031B09 | Sequence | 639 | 000795 (13) | ref|XP_009766547.1| | 4e-69 | PREDICTED: 60S ribosomal protein L35a-3-like [Nicotiana sylvestris] | 585 | 000795 (13) | ref|XP_009766547.1| | 2e-69 | PREDICTED: 60S ribosomal protein L35a-3-like [Nicotiana sylvestris] |
| JMSF048C14 | Sequence | 573 | 000795 (13) | ref|XP_009590569.1| | 1e-69 | PREDICTED: 60S ribosomal protein L35a-3 [Nicotiana tomentosiformis] ref|XP_00960 | |||||
This contig is upended
. : . : . : . : . : . :
JMFF038C24+ G
____________________________________________________________
consensus G
. : . : . : . : . : . :
JMFN044J08+ AAATGACCAAAAGTAGTTGCATTTGACC
rJMSF031B09- GTCAAAAAGGATGTCAAATGACCAAAAGTAGTTGCATTTGACC
JMFF038C24+ AACAAAACACAAACACAGTCAAAAAGGATGTCAAATGACCAAAAGTAGTTGCATTTGACC
JMSF048C14+ TGACCAAAAGTAGTTGCATTTGACC
rJMFF050O16- CCAAAAGTAGTTGCATTTGACC
JMSF027N04+ TGTCAAATGACCAAAAGTAGTTGCATTTGACC
rJMSF028G20- AAACACAAACACAGTCAAAAAGGATGTCAAATGACCAAAAGTAGTTGCATTTGACC
____________________________________________________________
consensus AACAAAACACAAACACAGTCAAAAAGGATGTCAAATGACCAAAAGTAGTTGCATTTGACC
. : . : . : . : . : . :
rJMFF021K10- ATGGCAN
JMFN044J08+ ATATATGTTCATTCGTACAACTCCAACATTGTCTAACAAAAAAGAGTAGAACATGG-CAA
rJMSF031B09- ATATATGTTCATTCGTACAACTCCAACATTGTCTAACAAAAAAGAGTAGAACATGG-CAA
JMFF038C24+ ATATATGTTCATTCGTACAACTCCAACATTGTCTAACAAAAAAGAGTAGAACATGG-CAA
JMSF048C14+ ATATATGTTCATTCGTACCACTCCAACATTGTCTAACAAAAAAGAGTAGAACATGG-CAA
rJMFF050O16- ATATATGTTCATTCGTACAACTCCAACATTGTCTAACAAAAAAGAGTAGAACATGG-CAA
rJMSF027N04- ACTCCAACATTGTCTAACAAAAAAGAGTAGAACATGGTCAA
JMSF027N04+ ATATATGTTCATTCGTACAACTCCAACATTGTCTAACAAAAAAGAGTAGAACATGG-CAA
rJMSF028G20- ATATATGTTCATTCGTACAACTCCAACATTGTCTAACAAAAAAGAGTAGAACATGG-CAA
____________________________________________________________
consensus ATATATGTTCATTCGTACAACTCCAACATTGTCTAACAAAAAAGAGTAGAACATGG-CAA
. : . : . : . : . : . :
rJMFF021K10- ATTTGACTACTATATAAATATTATGGCTCCNAAACCCGCTACAACTCTCATCTTCATCTT
JMFN044J08+ ATTTGACTACTATATAAATATTA-GGCTCCAAAACCCGCTACAACTCTCATCTTCATCTT
rJMSF031B09- ATTTGACTACTATATAAATATTA-GGCTCCAAAACCCGCTACAACTCTCATCTTCATCTT
JMFF038C24+ ATTTGACTACTATATAAATATTA-GGCTCCAAAACCCGCTACAACTCTCATCTTCATCTT
JMSF048C14+ ATTTGACTACTATATAAATATTA-GGCTCCAAAACCCGCTACAACTCTCATCTTCATCTT
rJMFF050O16- ATTTGACTACTATATAAATATTA-GGCTCCAAAACCCGCTACAACTCTCATCTTCATCTT
rJMSF027N04- ATTTGACTACTATATAAATATTA-GGCTCCAAAACCCGCTACAACTCTCATCTTCATCTT
JMSF027N04+ ATTTGACTACTATATAAATATTA-GGCTCCAAAACCCGCTACAACTCTCATCTTCATCTT
rJMSF028G20- ATTTGACTACTATATAAATATTA-GGCTCCAAAACCCGCTACAACTCTCATCTTCATCTT
____________________________________________________________
consensus ATTTGACTACTATATAAATATTA-GGCTCCAAAACCCGCTACAACTCTCATCTTCATCTT
. : . : . : . : . : . :
rJMFF021K10- CTCTTCTCTTATATGTTGCTTGGGTACATGAAAACCCTAACTTTGTTCCCCATGGACTTA
JMFN044J08+ CTCTTCTCTTATATGTTGCTTGGGTACATGAAAACCCTAACTTTGTTCCCCATGGACTTA
rJMSF031B09- CTCTTCTCTTATATGTTGCTTGGGTACATGAAAACCCTAACTTTGTTCCCCATGGACTTA
JMFF038C24+ CTCTTCTCTTATATGTTGCTTGGGTACATGAAAACCCTAACTTTGTTCCCCATGGACTTA
JMSF048C14+ CTCTTCTCTTATATGTTGCTTGGGTACATGAAAACCCTAACTTTGTTCCCCATGGACTTA
rJMFF050O16- CTCTTCTCTTATATGTTGCTTGGGTACATGAAAACCCTAACTTTGTTCCCCATGGACTTA
rJMSF027N04- CTCTTCTCTTATATGTTGCTTGGGTACATGAAAACCCTAACTTTGTTCCCCATGGACTTA
JMSF031B09+ CTTATATGTTGCTTGGGTACATGAAAACCCTAACTTTGTTCCCCATGGACTTA
JMFN015D05+ CTTCTCTTATATGTTGCTTGGGTACATGAAAACCCTAACTTTGTTCCCCATGGACTTA
JMSF027N04+ CTCTTCTCTTATATGTTGCTTGGGTACATGAAAACCCTAACTTTGTTCCCCATGGACTTA
rJMSF028G20- CTCTTCTCTTATATGTTGCTTGGGTACATGAAAACCCTAACTTTGTTCCCCATGGACTTA
JMSF028G20+ CTTATATGTTGCTTGGGTACATGAAAACCCTAACTTTGTTCCCCATGGACTTA
____________________________________________________________
consensus CTCTTCTCTTATATGTTGCTTGGGTACATGAAAACCCTAACTTTGTTCCCCATGGACTTA
. : . : . : . : . : . :
rJMFF021K10- GGCGGCAAGTTGGACTTGAACTTCGCTCTGACGACNCCGCTNTTGCCGTGTGGCCGACAG
JMFN044J08+ GGCGGCAAGTTGGACTTGAACTTCGCTCTGACGACGCCGCTATTGCCGTGTGGCCGACAG
rJMSF031B09- GGCGGCAAGTTGGACTTGAACTTCGCTCTGACGACGCCGCTATTGCCGTGTGGCCGACAG
JMFF038C24+ GGCGGCAAGTTGGACTTGAACTTCGCTCTGACGACGCCGCTATTGCCGTGTGGCCGACAG
JMSF048C14+ GGCGGCAAGTTGGACTTGAACTTCGCTCTGACGACGCCGCTATTGCCGTGTGGCCGACAG
rJMFF050O16- GGCGGCAAGTTGGACTTGAACTTCGCTCTGACGACGCCGCTATTGCCGTGTGGCCGACAG
rJMSF027N04- GGCGGCAAGTTGGACTTGAANTTCGCTCTGACGACGCCGCTATTGCCGTGTGGCCGACAG
JMSF031B09+ GGCGGCAAGTTGGACTTGAACTTCGCTCTGACGACGCCGCTATTGCCGTGTGGCCGACAG
JMFN015D05+ GGCGGCAAGTTGGACTTGAACTTCGCTCTGACGACGCCGCTATTGCCGTGTGGCCGACAG
JMSF027N04+ GGCGGCAAGTTGGACTTGAACTTCGCTCTGACGACGCCGCTATTGCCGTGTGGCCGACAG
rJMSF028G20- GGCGGCAAGTTGGACTTGAACTTCGCTCTGACGACGCCGCTATTGCCGTGTGGCCGACAG
JMSF028G20+ GGCGGCAAGTTGGACTTGAACTTCGCTCTGACGACGCCGCTATTGCCGTGTGGCCGACAG
____________________________________________________________
consensus GGCGGCAAGTTGGACTTGAACTTCGCTCTGACGACGCCGCTATTGCCGTGTGGCCGACAG
. : . : . : . : . : . :
rJMFF021K10- ACCTTCCCCCANATACAACGGTAGTGGGACCCGCCCTTCTTGGTCT
JMFN044J08+ ACCTTCCCCCAGATACAACGGTAGTGGGACCCGCCCTTCTTGGTCTTAGCCTTGTAGACA
rJMSF031B09- ACCTTCCCCCAGATACAACGGTAGTGGGACCCGCCCTTCTTGGTCTTAGCCTTGTAGACA
JMFF038C24+ ACCTTCCCCCAGATACAACGGTAGTGGGACCCGCCCTTCTTGGTCTTAGCCTTGTAGACA
JMSF048C14+ ACCTTCCCCCAGATACAACGGTAGTGGGACCCGCCCTTCTTGGTCTTAGCCTTGTAGACA
rJMFF050O16- ACCTTCCCCCAGATACAACGGTAGTGGGACCCGCCCTTCTTGGTCTTAGCCTTGTAGACA
rJMSF027N04- ACCTTCCCCCAGATACAACGGTAGTGGGACCCGCCCTTCTTGGTCTTAGCCTTGTAGACA
JMSF031B09+ ACCTTCCCCCAGATACAACGGTAGTGGGACCCGCCCTTCTTGGTCTTAGCCTTGTAGACA
JMFN015D05+ ACCTTCCCCCAGATACAACGGTAGTGGGACCCGCCCTTCTTGGTCTTAGCCTTGTAGACA
JMSF027N04+ ACCTTCCCCCAGATACAACGGTAGTGGGACCCGCCCTTCTTGGTCTTAGCCTTGTAGACA
rJMSF028G20- ACCTTCCCCCAGATACAACGGTAGTGGGACCCGCCCTTCTTGGTCTTAGCCTTGTAGACA
JMSF028G20+ ACCTTCCCCCAGATACAACGGTAGTGGGACCCGCCCTTCTTGGTCTTAGCCTTGTAGACA
____________________________________________________________
consensus ACCTTCCCCCAGATACAACGGTAGTGGGACCCGCCCTTCTTGGTCTTAGCCTTGTAGACA
. : . : . : . : . : . :
JMFN044J08+ TACGCCATGCGCTTTCCCTGGTACCAATCCACTTCCTCTTTAGTGTTCACTCCCTCAATC
rJMSF031B09- TACGCCATGCGCTTTCCCTGGTACCAATCCACTTCCTCTTTAGTGTTCACTCCCTCAATC
JMFF038C24+ TACGCCATGCGCTTTCCCTGGTACCAATCCACTTCCTCTTTAGTGTTCACTCCCTCAATC
JMSF048C14+ TACGCCATGCGCTTTCCCTGGTACCAATCCACTTCCTCTTTAGTGTTCACTCCCTCAATC
rJMFF050O16- TACGCCATGCGCTTTCCCTGGTACCAATCCACTTCCTCTTTAGTGTTCACTCCCTCAATC
rJMSF027N04- TACGCCATGCGCTTTCCCTGGTACCAATCCACTTCCTCTTTAGTGTTCACTCCCTCAATC
JMSF031B09+ TACGCCATGCGCTTTCCCTGGTACCAATCCACTTCCTCTTTAGTGTTCACTCCCTCAATC
JMFN015D05+ TACGCCATGCGCTTTCCCTGGTACCAATCCACTTCCTCTTTAGTGTTCACTCCCTCAATC
JMSF027N04+ TACGCCATGCGCTTTCCCTGGTACCAATCCACTTCCTCTTTAGTGTTCACTCCCTCAATC
rJMSF028G20- TACGCCATGCGCTTTCCCTGGTACCAATCCACTTCCTCTTTAGTGTTCACTCCCTCAATC
JMSF028G20+ TACGCCATGCGCTTTCCCTGGTACCAATCCACTTCCTCTTTAGTGTTCACTCCCTCAATC
____________________________________________________________
consensus TACGCCATGCGCTTTCCCTGGTACCAATCCACTTCCTCTTTAGTGTTCACTCCCTCAATC
. : . : . : . : . : . :
JMFN044J08+ TGAATCAGGGAAGTGTTTGGATACTGGTTCGACTTCGATCTCTTGTACCCGAGAATCGTC
rJMSF031B09- TGAATCAGGGAAGTGTTTGGATACTGGTTCGACTTCGATCTCTTGTACCCGAGAATCGTC
JMFF038C24+ TGAATCAGGGAAGTGTTTGGATACTGGTTCGACTTCGATCTCTTGTACCCGAGAATCGTC
JMSF048C14+ TGAATCAGGGAAGTGTTTGGATACTGGTTCGACTTCGATCTCTTGTACCCGAGAATCGTC
rJMFF050O16- TGAATCAGGGAAGTGTTTGGATACTGGTTCGACTTCGATCTCTTGTACCCGAGAATCGTC
rJMSF027N04- TGAATCANGGAAGTGTTTGGATACTGGTTCGACTTCGATCTCTTGTACCCGAGAATCGTC
JMSF031B09+ TGAATCAGGGAAGTGTTTGGATACTGGTTCGACTTCGATCTCTTGTACCCGAGAATCGTC
JMFN015D05+ TGAATCAGGGAAGTGTTTGGATACTGGTTCGACTTCGATCTCTTGTACCCGAGAATCGTC
JMSF027N04+ TGAATCAGGGAAGTGTTTGGATACTGGTTCGACTTCGATCTCTTGTACCCGAGAATCGTC
rJMSF028G20- TGAATCAGGGAAGTGTTTGGATACTGGTTCGACTTCGATCTCTTGTACCCGAGAATCGTC
JMSF028G20+ TGAATCAGGGAAGTGTTTGGATACTGGTTCGACTTCGATCTCTTGTACCCGAGAATCGTC
____________________________________________________________
consensus TGAATCAGGGAAGTGTTTGGATACTGGTTCGACTTCGATCTCTTGTACCCGAGAATCGTC
. : . : . : . : . : . :
JMFN044J08+ CCTCTGATATAAAGTCTGACGCGCTCTCCTTGACGTCCCTTAACCATTTTTGACTGCAGA
rJMSF031B09- CCTCTGATATAAAGTCTGACGCGCTCTCCTTGACGTCCCTTAACCATTTTTGACTGCAGA
JMFF038C24+ CCTCTGATATAAAGTCTGACGCGCTCTCCTTGACGTCCCTTAACCATTTTTGACTGCAGA
JMSF048C14+ CCTCTGATATAAAGTCTGACGCGCTCTCCTTGACGTCCCTTAACCATTTTTGACTGCAGA
rJMFF050O16- CCTCTGATATAAAGTCTGACGCGCTCTCCTTGACGTCCCTTAACCATTTTTGACTGCAGA
rJMSF027N04- CCTCTGATATAAAGTCTGACGCGCTCTCCTTGACGTCCCTTAACCATTTTTGACTGCAGA
JMSF031B09+ CCTCTGATATAAAGTCTGACGCGCTCTCCTTGACGTCCCTTAACCATTTTTGACTGCAGA
JMFN015D05+ CCTCTGATATAAAGTCTGACGCGCTCTCCTTGACGTCCCTTAACCATTTTTGACTGCAGA
JMSF027N04+ CCTCTGATATAAAGTCTGACGCGCTCTCCTTGACGTCCCTTAACCATTTTTGACTGCAGA
JMFF050O16+ CTGACGCGCTCTCCTTGACGTCCCTTAACCA-TATTGACTGCAGA
rJMSF028G20- CCTCTGATATAAAGTCTGACGCGCTCTCCTTGACGTCCCTTAACCATTTTTGACTGCAGA
JMSF028G20+ CCTCTGATATAAAGTCTGACGCGCTCTCCTTGACGTCCCTTAACCATTTTTGACTGCAGA
____________________________________________________________
consensus CCTCTGATATAAAGTCTGACGCGCTCTCCTTGACGTCCCTTAACCATTTTTGACTGCAGA
. : . : . : . : . : . :
JMFN044J08+ ACGGGAGCTACGGCGGAGAGTGAC
rJMSF031B09- ACGGGAGCTACGGCGGAGAGTGACGGTGGCGCCTGCGAAGAAGAAGCTAAACCC
JMFF038C24+ ACGGGAGCTACGGCGGAGAGTGACGGTGGCGCCTGCGAAGAAGAAGCTAAACCCT
JMSF048C14+ ACGGGAGCTACGGCGGAGAGTGACGGTGGCGCCTGCGAAGAAGAAGCTAAACCCT
rJMFF050O16- ACGGGAGCTACGGCGGAGAGTGACG
rJMSF027N04- ACGGGAGCTACGGCGGAGAGTGACGGTGGCGCCTGCGAAGAAGAAGCTAAACCCT
JMSF031B09+ ACGGGAGCTACGGCGGAGAGTGACGGTGGCGCCTGCGAAGAAGAAGCTAAACCC
JMFN015D05+ ACGGGAGCTACGGCGGAGAGTGACGGTGGCGCCTGCGAAGAAGAA
JMSF027N04+ ACGGGAGCTACGGCGGAGAGTGACGGTGGCGCCTGCGAAGAAGAAGCTAAACCCT
JMFF050O16+ ACGGGAGCTACGGCGGAGAGTGACGGTGGCGCCTGCGAAGAAGAAGCTAAACCCT
rJMSF028G20- ACGGGAGCTACGGCGGAGAGTGACGGTGGCGCCTGCGAAGAAGAAGCTAAACCCT
JMSF028G20+ ACGGGAGCTACGGCGGAGAGTGACGGTGGCGCCTGCGAAGAAGAAGCTAAACCCTAGTTC
____________________________________________________________
consensus ACGGGAGCTACGGCGGAGAGTGACGGTGGCGCCTGCGAAGAAGAAGCTAAACCCTAGTTC