clone | seq. | 5'-sequence | 3'-sequence | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
JMFF022I11 | Sequence | 480 | 012327 (12) | emb|CDP07667.1| | 3e-63 | unnamed protein product [Coffea canephora] | 306 | 012327 (12) | ref|XP_009631212.1| | 119 | PREDICTED: uncharacterized protein LOC104121022 [Nicotiana tomentosiformis] |
JMFF023D06 | Sequence | 650 | 012327 (12) | ref|XP_010257521.1| | 187 | PREDICTED: uncharacterized protein LOC104597589 [Nelumbo nucifera] | |||||
JMFF025N19 | Sequence | 460 | 012327 (12) | emb|CDP07667.1| | 2e-62 | unnamed protein product [Coffea canephora] | 692 | 012327 (12) | ref|XP_002880102.1| | 2e-66 | calcium-binding EF hand family protein [Arabidopsis lyrata subsp. lyrata] gb|EF |
JMFF028M24 | Sequence | 401 | 012327 (12) | emb|CDP07667.1| | 3e-46 | unnamed protein product [Coffea canephora] | 736 | 012327 (12) | ref|XP_002880102.1| | 2e-66 | calcium-binding EF hand family protein [Arabidopsis lyrata subsp. lyrata] gb|EF |
JMFS012H08 | Sequence | 620 | 012327 (12) | ref|XP_002880102.1| | 8e-67 | calcium-binding EF hand family protein [Arabidopsis lyrata subsp. lyrata] gb|EF | |||||
JMSF018P04 | Sequence | 450 | 012327 (12) | ref|XP_010243386.1| | 139 | PREDICTED: uncharacterized protein LOC104587464 [Nelumbo nucifera] | 740 | 012327 (12) | ref|XP_002880102.1| | 1e-66 | calcium-binding EF hand family protein [Arabidopsis lyrata subsp. lyrata] gb|EF |
JMSF026M22 | Sequence | 582 | 012327 (12) | emb|CDP07667.1| | 7e-66 | unnamed protein product [Coffea canephora] | 738 | 012327 (12) | ref|XP_002880102.1| | 3e-66 | calcium-binding EF hand family protein [Arabidopsis lyrata subsp. lyrata] gb|EF |
Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.
SCORE============================================Contig012327============================================ 908 20 ------------------------------------------------->JMSF018P04 <--------------------------------------------------------------------------------rJMSF018P04 168 --------------------------------------------------------------->JMSF026M22 <------------------------------------------------------------------------------rJMSF026M22 194 ------------------------------------------------->JMFF025N19 <---------------------------------------------------------------------------rJMFF025N19 201 ------------------------------->JMFF028M24 <--------------------------------------------------------------------------------rJMFF028M24 487 ------------------------------------------->JMFF022I11 <--------------------------------rJMFF022I11
The following clones don't have the opposite end in this pair.
<----------------------------------------------------------------------rJMFF023D06- ------------------------------------------------------------------->JMFS012H08-