| clone | seq. | 5'-sequence | 3'-sequence | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
| JMFF008B10 | Sequence | 578 | 005944 (20) | sp|Q9SMB4.1|PSBS_TOBAC | 7e-35 | RecName: Full=Photosystem II 22 kDa protein, chloroplastic; AltName: Full=CP22; | |||||
| JMFF010E16 | Sequence | 584 | 005944 (20) | ref|XP_009771859.1| | 4e-37 | PREDICTED: photosystem II 22 kDa protein, chloroplastic [Nicotiana sylvestris] | |||||
| JMFF025B20 | Sequence | 553 | 005944 (20) | ref|XP_009771859.1| | 4e-42 | PREDICTED: photosystem II 22 kDa protein, chloroplastic [Nicotiana sylvestris] | 128 | 005944 (20) | |||
| JMFF029C21 | Sequence | 553 | 005944 (20) | ref|XP_009771859.1| | 6e-43 | PREDICTED: photosystem II 22 kDa protein, chloroplastic [Nicotiana sylvestris] | |||||
| JMFF029E16 | Sequence | 219 | 005944 (20) | ||||||||
| JMFF033K22 | Sequence | 530 | 005944 (20) | ref|XP_009771859.1| | 2e-37 | PREDICTED: photosystem II 22 kDa protein, chloroplastic [Nicotiana sylvestris] | |||||
| JMFF033L21 | Sequence | 579 | 005944 (20) | ref|XP_009771859.1| | 2e-47 | PREDICTED: photosystem II 22 kDa protein, chloroplastic [Nicotiana sylvestris] | |||||
| JMFF034H18 | Sequence | 582 | 005944 (20) | ref|XP_009771859.1| | 3e-47 | PREDICTED: photosystem II 22 kDa protein, chloroplastic [Nicotiana sylvestris] | |||||
| JMFF042P24 | Sequence | 641 | 005944 (20) | ref|XP_009771859.1| | 4e-61 | PREDICTED: photosystem II 22 kDa protein, chloroplastic [Nicotiana sylvestris] | 574 | 005944 (20) | ref|XP_009771859.1| | 6e-60 | PREDICTED: photosystem II 22 kDa protein, chloroplastic [Nicotiana sylvestris] |
| JMFF046L07 | Sequence | 577 | 005944 (20) | ref|XP_009771859.1| | 5e-45 | PREDICTED: photosystem II 22 kDa protein, chloroplastic [Nicotiana sylvestris] | 507 | 005944 (20) | ref|XP_009771859.1| | 3e-62 | PREDICTED: photosystem II 22 kDa protein, chloroplastic [Nicotiana sylvestris] |
| JMFF046P10 | Sequence | 468 | 005944 (20) | gb|ABO41853.1| | 1e-24 | putative photosystem II protein [Gossypium hirsutum] | 510 | 005944 (20) | ref|XP_009771859.1| | 1e-59 | PREDICTED: photosystem II 22 kDa protein, chloroplastic [Nicotiana sylvestris] |
| JMFN008L17 | Sequence | 613 | 005944 (20) | ref|XP_009771859.1| | 6e-58 | PREDICTED: photosystem II 22 kDa protein, chloroplastic [Nicotiana sylvestris] | |||||
| JMFS085H02 | Sequence | 504 | 005944 (20) | ref|XP_009771859.1| | 4e-58 | PREDICTED: photosystem II 22 kDa protein, chloroplastic [Nicotiana sylvestris] | |||||
Explanatory notes: "*" The opposite end is in another contig. "**" The opposite end is in same contig. "#" The opposite end is singlet. "-" The opposite end has no seqence.
SCORE============================================Contig005944============================================1208 236 ---------------------------------------------------->JMFF042P24 <-------------------------------------------rJMFF042P24 252 -------------------------------------->JMFF046P10 <--------------------------------------rJMFF046P10 252 ----------------------------------------------->JMFF046L07 <---------------------------------------rJMFF046L07 1110 --------------------------------------------->JMFF025B20 ------>rJMFF025B20
The following clones don't have the opposite end in this pair.
-------------------------------------->JMSF012K11# ---------------->rJMFF029E16- ----------------------------------------------->JMFF010E16- ----------------------------------------------->JMFF034H18- ------------------------------>JMFS085H02- ----------------------------------------------->JMFF033L21- --------------------------------------------->JMFF029C21- ------------------------------------------------------->JMSF047B08# ----------------------------------------------->JMFF008B10- ------------------------------------------->JMFF033K22- -------------------------------------------------->JMFN008L17- ----------------------------------------------->JMFF017C17#