| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF008B10 | Sequence | 578 | 005944 (20) | sp|Q9SMB4.1|PSBS_TOBAC | 7e-35 | RecName: Full=Photosystem II 22 kDa protein, chloroplastic; AltName: Full=CP22; | |||||
| JMFF010E16 | Sequence | 584 | 005944 (20) | ref|XP_009771859.1| | 4e-37 | PREDICTED: photosystem II 22 kDa protein, chloroplastic [Nicotiana sylvestris] | |||||
| JMFF017C17 | Sequence | 583 | 005944 (20) | gb|ABO41853.1| | 5e-25 | putative photosystem II protein [Gossypium hirsutum] | 129 | 021255 | gb|EYU22974.1| | 5e-07 | hypothetical protein MIMGU_mgv1a011767mg [Erythranthe guttata] |
| JMFF025B20 | Sequence | 553 | 005944 (20) | ref|XP_009771859.1| | 4e-42 | PREDICTED: photosystem II 22 kDa protein, chloroplastic [Nicotiana sylvestris] | 128 | 005944 (20) | |||
| JMFF029C21 | Sequence | 553 | 005944 (20) | ref|XP_009771859.1| | 6e-43 | PREDICTED: photosystem II 22 kDa protein, chloroplastic [Nicotiana sylvestris] | |||||
| JMFF029E16 | Sequence | 219 | 005944 (20) | ||||||||
| JMFF033K22 | Sequence | 530 | 005944 (20) | ref|XP_009771859.1| | 2e-37 | PREDICTED: photosystem II 22 kDa protein, chloroplastic [Nicotiana sylvestris] | |||||
| JMFF033L21 | Sequence | 579 | 005944 (20) | ref|XP_009771859.1| | 2e-47 | PREDICTED: photosystem II 22 kDa protein, chloroplastic [Nicotiana sylvestris] | |||||
| JMFF034H18 | Sequence | 582 | 005944 (20) | ref|XP_009771859.1| | 3e-47 | PREDICTED: photosystem II 22 kDa protein, chloroplastic [Nicotiana sylvestris] | |||||
| JMFF042P24 | Sequence | 641 | 005944 (20) | ref|XP_009771859.1| | 4e-61 | PREDICTED: photosystem II 22 kDa protein, chloroplastic [Nicotiana sylvestris] | 574 | 005944 (20) | ref|XP_009771859.1| | 6e-60 | PREDICTED: photosystem II 22 kDa protein, chloroplastic [Nicotiana sylvestris] |
| JMFF046L07 | Sequence | 577 | 005944 (20) | ref|XP_009771859.1| | 5e-45 | PREDICTED: photosystem II 22 kDa protein, chloroplastic [Nicotiana sylvestris] | 507 | 005944 (20) | ref|XP_009771859.1| | 3e-62 | PREDICTED: photosystem II 22 kDa protein, chloroplastic [Nicotiana sylvestris] |
| JMFF046P10 | Sequence | 468 | 005944 (20) | gb|ABO41853.1| | 1e-24 | putative photosystem II protein [Gossypium hirsutum] | 510 | 005944 (20) | ref|XP_009771859.1| | 1e-59 | PREDICTED: photosystem II 22 kDa protein, chloroplastic [Nicotiana sylvestris] |
| JMFN008L17 | Sequence | 613 | 005944 (20) | ref|XP_009771859.1| | 6e-58 | PREDICTED: photosystem II 22 kDa protein, chloroplastic [Nicotiana sylvestris] | |||||
| JMFS085H02 | Sequence | 504 | 005944 (20) | ref|XP_009771859.1| | 4e-58 | PREDICTED: photosystem II 22 kDa protein, chloroplastic [Nicotiana sylvestris] | |||||
| JMSF012K11 | Sequence | 475 | 005944 (20) | gb|ABO41853.1| | 1e-25 | putative photosystem II protein [Gossypium hirsutum] | 270 | 018150 | |||
| JMSF047B08 | Sequence | 680 | 005944 (20) | ref|XP_009771859.1| | 8e-47 | PREDICTED: photosystem II 22 kDa protein, chloroplastic [Nicotiana sylvestris] | 129 | 024681 | ref|XP_004970722.1| | 1e-05 | PREDICTED: photosystem II 22 kDa protein, chloroplastic-like [Setaria italica] |
This contig is upended
. : . : . : . : . : . :
rJMFF029E16+ TCTGTATT
____________________________________________________________
consensus TCTGTATT
. : . : . : . : . : . :
rJMFF029E16+ ATTAGCTCATANTNAATCGGGANNCNNATAACGTCACTACTTTNANNTNATNNAATCCTC
____________________________________________________________
consensus ATTAGCTCATANTNAATCGGGANNCNNATAACGTCACTACTTTNANNTNATNNAATCCTC
. : . : . : . : . : . :
rJMFF025B20+ TAATATATA
rJMFF029E16+ CTTNNTCGNAGNNACTTCCCCTATNNNTCCGCCTGNGAACTCACGTACGCGTAATATATA
____________________________________________________________
consensus CTTNNTCGNAGNNACTTCCCCTATNNNTCCGCCTGNGAACTCACGTACGCGTAATATATA
. : . : . : . : . : . :
rJMFF025B20+ TAGTAACTTGCACAGAAAAAAGAAGTNTGAAAGAGCTTAGTGGAGTGCACATTATATTGT
rJMFF029E16+ TAGTAACTTGCACAGAAAAAAGAAGTTTGAAAGAGCTTAGTGGAGTGCACATTATATNGT
rJMFF046P10- GAAGTTTGAAAGAGCTTAGTGGAGTGCACATTATATTGT
rJMFF046L07- GAAGTTTGAAAGAGCTTAGTGGAGTGCACATTATATTGT
rJMFF042P24- TTGCACAGAAAAAAGAAGTTTGAAAGAGCTTAGTGGAGTGCACATTATATTGT
____________________________________________________________
consensus TAGTAACTTGCACAGAAAAAAGAAGTTTGAAAGAGCTTAGTGGAGTGCACATTATATTGT
. : . : . : . : . : . :
rJMFF025B20+ ACCCGTTTTAGTATG
rJMFF029E16+ ACCCGTTTTAGTATGAGC
rJMFF046P10- ACCCGTTTTAGTATGAGCTAATAATACAGAGAAGATGAAATTTAAAAAGAAAAAAAAAAA
rJMFF046L07- ACCCGTTTTAGTATGAGCTAATAATACAGAGAAGATGAAATTTAAAAAGAAAAAAAAAAA
rJMFF042P24- ACCCGTTTTAGTATGAGCTAATAATACAGAGAAGATGAAATTTXXXXXXXXXXXXXXXXX
____________________________________________________________
consensus ACCCGTTTTAGTATGAGCTAATAATACAGAGAAGATGAAATTTAAAAAGAAAAAAAAAAA
. : . : . : . : . : . :
rJMFF046P10- AAGAGAAAGAAGAAGAATTAGTCTTCTTCTTCATCAGTGACAAACTTTCCAGTGCCTGGA
JMFS085H02+ GAGAAAGAAGAAGAATTAGTCTTCTTCTTCATCAGTGACAAACTTTCCAGTGCCTGGA
rJMFF046L07- AAGAGAAAGAAGAAGAATTAGTCTTCTTCTTCATCAGTGACAAACTTTCCAGTGCCTGGA
rJMFF042P24- XXGAGAAAGAAGAAGAATTAGTCTTCTTCTTCATCAGTGACAAACTTTCCAGTGCCTGGA
____________________________________________________________
consensus AAGAGAAAGAAGAAGAATTAGTCTTCTTCTTCATCAGTGACAAACTTTCCAGTGCCTGGA
. : . : . : . : . : . :
rJMFF046P10- TTGATTGCTGCAAAGAAGAAGAAAGCAACGTTAAACAAGATCAAGGGCTCGATTTCGCCA
JMFS085H02+ TTGATTGCTGCAAAGAAGAAGAAAGCAACGTTAAACAAGATCAAGGGCTCGATTTCGCCA
rJMFF046L07- TTGATTGCTGCAAAGAAGAAGAAAGCAACGTTAAACAAGATCAAGGGCTCGATTTCGCCA
rJMFF042P24- TTGATTGCTGCAAAGAAGAAGAAAGCAACGTTAAACAAGATCAAGGGCTCGATTTCGCCA
____________________________________________________________
consensus TTGATTGCTGCAAAGAAGAAGAAAGCAACGTTAAACAAGATCAAGGGCTCGATTTCGCCA
. : . : . : . : . : . :
rJMFF046P10- ATGGGCACACCAGTCTCGATGTTGAGCTGCGCAAGTGCCCCTTTCCCAGTAATAATCTCT
JMFS085H02+ ATGGGCACACCAGTCTCGATGTTGAGCTGCGCAAGTGCCCCTTTCCCAGTAATAATCTCT
rJMFF046L07- ATGGGCACACCAGTCTCGATGTTGAGCTGCGCAAGTGCCCCTTTCCCAGTAATAATCTCT
rJMFF042P24- ATGGGCACACCAGTCTCGATGTTGAGCTGCGCAAGTGCCCCTTTCCCAGTAATAATCTCT
____________________________________________________________
consensus ATGGGCACACCAGTCTCGATGTTGAGCTGCGCAAGTGCCCCTTTCCCAGTAATAATCTCT
. : . : . : . : . : . :
rJMFF046P10- CCAATTATAGAGAATGCAATCCCCAGTTGTGCCAATCTCCCCACAAACAGCTCGTTTGAT
JMFS085H02+ CCAATTATAGAGAATGCAATCCCCAGTTGTGCCAATCTCCCCACAAACAGCTCGTTTGAT
rJMFF046L07- CCAATTATAGAGAATGCAATCCCCAGTTGTGCCAATCTCCCCACAAACAGCTCGTTTGAT
rJMFF042P24- CCAATTATAGAGAATGCAATCCCCAGTTGTGCCAATCTCCCCACAAACAGCTCGTTTGAT
JMFN008L17+ TCCCCACAAACAGCTCGTTTGAT
JMFF042P24+ CCCCACAAACAGCTCGTTTGAT
____________________________________________________________
consensus CCAATTATAGAGAATGCAATCCCCAGTTGTGCCAATCTCCCCACAAACAGCTCGTTTGAT
. : . : . : . : . : . :
rJMFF046P10- TTCGTGAATCCGAACAGTGGACCTCCTTCACTGAGTCCTAGAGCTGAACGGAAACTTTTG
JMFS085H02+ TTCGTGAATCCGAACAGTGGACCTCCTTCACTGAGTCCTAGAGCTGAACGGAAACTTTTG
rJMFF046L07- TTCGTGAATCCGAACAGTGGACCTCCTTCACTGAGTCCTAGAGCTGAACGGAAACTTTTG
rJMFF042P24- TTCGTGAATCCGAACAGTGGACCTCCTTCACTGAGTCCTAGAGCTGAACGGAAACTTTTG
JMFN008L17+ TTCGTGAATCCGAACAGTGGACCTCCTTCACTGAGTCCTAGAGCTGAACGGAAACTTTTG
JMFF033L21+ CTAGAGCTGAACGGAAACTTTTG
JMFF034H18+ CCTAGAGCTGAACGGAAACTTTTG
JMFF008B10+ GTCCTAGAGCTGAACGGAAACTTTTG
JMFF046L07+ TAGAGCTGAACGGAAACTTTTG
JMFF042P24+ TTCGTGAATCCGAACAGTGGACCTCCTTCACTGAGTCCTAGAGCTGAACGGAAACTTTTG
JMSF047B08+ TAGAGCTGAACGGAAACTTTTG
____________________________________________________________
consensus TTCGTGAATCCGAACAGTGGACCTCCTTCACTGAGTCCTAGAGCTGAACGGAAACTTTTG
. : . : . : . : . : . :
rJMFF046P10- CCCGGCGGGATGACGGCACGGTCGAGTCCGGTGGGAGGTGCAGGGTCATCGACGAACTTG
JMFS085H02+ CCCGGCGGGATGACGGCACGGTCGAGTCCGGTGGGAGGTGCAGGGTCATCGACGAACTTG
rJMFF046L07- CCCGGCGGGATGACGGCACGGTCGAGTCCGGTGGGAGGTGCAGGGTCATCGACGAACTTG
rJMFF042P24- CCCGGCGGGATGACGGCACGGTCGAGTCCGGTGGGAGGTGCAGGGTCATCGACGAACTTG
JMFN008L17+ CCCGGCGGGATGACGGCACGGTCGAGTCCGGTGGGAGGTGCAGGGTCATCGACGAACTTG
JMFF033L21+ CCCGGCGGGATGACGGCACGGTCGAGTCCGGTGGGAGGTGCAGGGTCATCGACGAACTTG
JMFF029C21+ CCGGCGGGATGACGGCACGGTCGAGTCCGGTGGGAGGTGCAGGGTCATCGACGAACTTG
JMFF034H18+ CCCGGCGGGATGACGGCACGGTCGAGTCCGGTGGGAGGTGCAGGGTCATCGACGAACTTG
JMFF008B10+ CCCGGCGGGATGACGGCACGGTCGAGTCCGGTGGGAGGTGCAGGGTCATCGACGAACTTG
JMFF046L07+ CCCGGCGGGATGACGGCACGGTCGAGTCCGGTGGGAGGTGCAGGGTCATCGACGAACTTG
JMFF025B20+ GGCGGGATGACGGCACGGTCGAGTCCGGTGGGAGGTGCAGGGTCATCGACGAACTTG
JMFF033K22+ TCCGGTGGGAGGTGCAGGGTCATCGACGAACTTG
JMFF042P24+ CCCGGCGGGATGACGGCACGGTCGAGTCCGGTGGGAGGTGCAGGGTCATCGACGAACTTG
JMFF010E16+ TCCGGTGGGAGGTGCAGGGTCATCGACGAACTTG
JMSF047B08+ CCCGGCGGGATGACGGCACGGTCGAGTCCGGTGGGAGGTGCAGGGTCATCGACGAACTTG
____________________________________________________________
consensus CCCGGCGGGATGACGGCACGGTCGAGTCCGGTGGGAGGTGCAGGGTCATCGACGAACTTG
. : . : . : . : . : . :
rJMFF046P10- CCCCTATCA
JMFS085H02+ CCCCTATCACCCAAAGCTC
rJMFF046L07- CCCCTATCACCCAAAGCTCCA
rJMFF042P24- CCCCTATCACCCAAAGCTCCAATGGCTCCCAGCAGATTGAAAAGGATGAAGAACAACAAC
JMFN008L17+ CCCCTATCACCCAAAGCTCCAATGGCTCCCAGCAGATTGAAAAGGATGAAGAACAACAAC
JMFF033L21+ CCCCTATCACCCAAAGCTCCAATGGCTCCCAGCAGATTGAAAAGGATGAAGAACAACAAC
JMFF029C21+ CCCCTATCACCCAAAGCTCCAATGGCTCCCAGCAGATTGAAAAGGATGAAGAACAACAAC
JMFF034H18+ CCCCTATCACCCAAAGCTCCAATGGCTCCCAGCAGATTGAAAAGGATGAAGAACAACAAC
JMFF008B10+ CCCCTATCACCCAAAGCTCCAATGGCTCCCAGCAGATTGAAAAGGATGAAGAACAACAAC
JMFF046L07+ CCCCTATCACCCAAAGCTCCAATGGCTCCCAGCAGATTGAAAAGGATGAAGAACAACAAC
JMFF025B20+ CCCCTATCACCCAAAGCTCCAATGGCTCCCAGCAGATTGAAAAGGATGAAGAACAACAAC
JMFF046P10+ CCAGCAGATTGAAAAGGATGAAGAACAACAAC
JMFF033K22+ CCCCTATCACCCAAAGCTCCAATGGCTCCCAGCAGATTGAAAAGGATGAAGAACAACAAC
JMFF042P24+ CCCCTATCACCCAAAGCTCCAATGGCTCCCAGCAGATTGAAAAGGATGAAGAACAACAAC
JMSF012K11+ CTCCCAGCAGATTGAAAAGGATGAAGAACAACAAC
JMFF010E16+ CCCCTATCACCCAAAGCTCCAATGGCTCCCAGCAGATTGAAAAGGATGAAGAACAACAAC
JMSF047B08+ CCCCTATCACCCAAAGCTCCAATGGCTCCCAGCAGATTGAAAAGGATGAAGAACAACAAC
JMFF017C17+ CTCCAATGGCTCCCAGCAGATTGAAAAGGATGAAGAACAACAAC
____________________________________________________________
consensus CCCCTATCACCCAAAGCTCCAATGGCTCCCAGCAGATTGAAAAGGATGAAGAACAACAAC
. : . : . : . : . : . :
rJMFF042P24- A
JMFN008L17+ AGA-GGCTCTGCCTCATAAATTGGAATCCCAGTTTCCAGGTTCAGTTGTGACAATATCCC
JMFF033L21+ AGA-GGCTCTGCCTCATAAATTGGAATCCCAGTTTCCAGGTTCAGTTGTGACAATATCCC
JMFF029C21+ AGA-GGCTCTGCCTCATAAATTGGAATCCCAGTTTCCAGGTTCAGTTGTGACAATATCCC
JMFF034H18+ AGA-GGCTCTGCCTCATAAATTGGAATCCCAGTTTCCAGGTTCAGTTGTGACAATATCCC
JMFF008B10+ AGAGGGCTCTGCCTCATAAATTGGAATCCCAGTTTCCAGGTTCAGTTGTGACAATATCCC
JMFF046L07+ AGA-GGCTCTGCCTCATAAATTGGAATCCCAGTTTCCAGGTTCAGTTGTGACAATATCCC
JMFF025B20+ AGA-GGCTCTGCCTCATAAATTGGAATCCCAGTTTCCAGGTTCAGTTGTGACAATATCCC
JMFF046P10+ AGA-GGCTCTGCCTCATAAATTGGAATCCCAGTTTCCAGGTTCAGTTGTGACAATATCCC
JMFF033K22+ AGA-GGCTCTGCCTCATAAATTGGAATCCCAGTTTCCAGGTTCAGTTGTGACAATATCCC
JMFF042P24+ AGA-GGCTCTGCCTCATAAATTGGAATCCCAGTTTCCAGGTTCAGTTGTGACAATATCCC
JMSF012K11+ AGA-GGCTCTGCCTCATAAATTGGAATCCCAGTTTCCAGGTTCAGTTGTGACAATATCCC
JMFF010E16+ AGA-GGCTCTGCCTCATAAATTGGAATCCCAGTTTCCAGGTTCAGTTGTGACAATATCCC
JMSF047B08+ AGA-GGCTCTGCCTCATAAATTGGAATCCCAGTTTCCAGGTTCAGTTGTGACAATATCCC
JMFF017C17+ AGA-GGCTCTGCCTCATAAATTGGAATCCCAGTTTCCAGGTTCAGTTGTGACAATATCCC
____________________________________________________________
consensus AGA-GGCTCTGCCTCATAAATTGGAATCCCAGTTTCCAGGTTCAGTTGTGACAATATCCC
. : . : . : . : . : . :
JMFN008L17+ CTTTCCTGTTATTGCTTCCCCCAGCAAAGATGCCGCAAAACCAATCATAGCCACACGACC
JMFF033L21+ CTTTCCTGTTATTGCTTCCCCCAGCAAAGATGCCGCAAAACCAATCATAGCCACACGACC
JMFF029C21+ CTTTCCTGTTATTGCTTCCCCCAGCAAAGATGCCGCAAAACCAATCATAGCCACACGACC
JMFF034H18+ CTTTCCTGTTATTGCTTCCCCCAGCAAAGATGCCGCAAAACCAATCATAGCCACACGACC
JMFF008B10+ CTTTCCTGTTATTGCTTCCCCCAGCAAAGATGCCGCAAAACCAATCATAGCCACACGACC
JMFF046L07+ CTTTCCTGTTATTGCTTCCCCCAGCAAAGATGCCGCAAAACCAATCATAGCCACACGACC
JMFF025B20+ CTTTCCTGTTATTGCTTCCCCCAGCAAAGATGCCGCAAAACCAATCATAGCCACACGACC
JMFF046P10+ CTTTCCTGTTATTGCTTCCCCCAGCAAAGATGCCGCAAAACCAATCATAGCCACACGACC
JMFF033K22+ CTTTCCTGTTATTGCTTCCCCCAGCAAAGATGCCGCAAAACCAATCATAGCCACACGACC
JMFF042P24+ CTTTCCTGTTATTGCTTCCCCCAGCAAAGATGCCGCAAAACCAATCATAGCCACACGACC
JMSF012K11+ CTTTCCTGTTATTGCTTCCCCCAGCAAAGATGCCGCAAAACCAATCATAGCCACACGACC
JMFF010E16+ CTTTCCTGTTATTGCTTCCCCCAGCAAAGATGCCGCAAAACCAATCATAGCCACACGACC
JMSF047B08+ CTTTCCTGTTATTGCTTCCCCCAGCAAAGATGCCGCAAAACCAATCATAGCCACACGACC
JMFF017C17+ CTTTCCTGTTATTGCTTCCCCCAGCAAAGATGCCGCAAAACCAATCATAGCCACACGACC
____________________________________________________________
consensus CTTTCCTGTTATTGCTTCCCCCAGCAAAGATGCCGCAAAACCAATCATAGCCACACGACC
. : . : . : . : . : . :
JMFN008L17+ AACAAAGAGCTCATTTTGCTTGGTGAACCCAATTCCTCCTGAAGTACCAAAAATGCCATC
JMFF033L21+ AACAAAGAGCTCATTTTGCTTGGTGAACCCAATTCCTCCTGAAGTACCAAAAATGCCATC
JMFF029C21+ AACAAAGAGCTCATTTTGCTTGGTGAATCCAATTCCTCCTGAAGTACCAAAAATGCCATC
JMFF034H18+ AACAAAGAGCTCATTTTGCTTGGTGAACCCAATTCCTCCTGAAGTACCAAAAATGCCATC
JMFF008B10+ AACAAAGAGCTCATTTTGCTTGGTGAACCCAATTCCTCCTGAAGTACCAAAAATGCCATC
JMFF046L07+ AACAAAGAGCTCATTTTGCTTGGTGAACCCAATTCCTCCTGAAGTACCAAAAATGCCATC
JMFF025B20+ AACAAAGAGCTCATTTTGCTTGGTGAACCCAATTCCTCCTGAAGTACCAAAAATGCCATC
JMFF046P10+ AACAAAGAGCTCATTTTGCTTGGTGAACCCAATTCCTCCTGAAGTACCAAAAATGCCATC
JMFF033K22+ AACAAAGAGCTCATTTTGCTTGGTGAACCCAATTCCTCCTGAAGTACCAAAAATGCCATC
JMFF042P24+ AACAAAGAGCTCATTTTGCTTGGTGAACCCAATTCCTCCTGAAGTACCAAAAATGCCATC
JMSF012K11+ AACAAAGAGCTCATTTTGCTTGGTGAACCCAATTCCTCCTGAAGTACCAAAAATGCCATC
JMFF010E16+ AACAAAGAGCTCATTTTGCTTGGTGAACCCAATTCCTCCTGAAGTACCAAAAATGCCATC
JMSF047B08+ AACAAAGAGCTCATTTTGCTTGGTGAACCCAATTCCTCCTGAAGTACCAAAAATGCCATC
JMFF017C17+ AACAAAGAGCTCATTTTGCTTGGTGAACCCAATTCCTCCTGAAGTACCAAAAATGCCATC
____________________________________________________________
consensus AACAAAGAGCTCATTTTGCTTGGTGAACCCAATTCCTCCTGAAGTACCAAAAATGCCATC
. : . : . : . : . : . :
JMFN008L17+ CTCCACCTTAGGCTTGGGCTGAACAACCTTCTTTGCTGGTGCGGCTTTGGCCTTTGACTT
JMFF033L21+ CTCCACCTTAGGCTTGGGCTGAACAACCTTCTTTGCTGGTGCGGCTTTGGCCTTTGACTT
JMFF029C21+ CTCCACCTTAGGCTTGGGCTGAACAACCTTCTTTGCTGGTGCGGCTTTGGCCTTTGACTT
JMFF034H18+ CTCCACCTTAGGCTTGGGCTGAACAACCTTCTTTGCTGGTGCGGCTTTGGCCTTTGACTT
JMFF008B10+ CTCCACCTTAGGCTTGGGCTGAACAACCTTCTTTGCTGGTGCGGCTTTGGCCTTTGACTT
JMFF046L07+ CTCCACCTTAGGCTTGGGCTGAACAACCTTCTTTGCTGGTGCGGCTTTGGCCTTTGACTT
JMFF025B20+ CTCCACCTTAGGCTTGGGCTGAACAACCTTCTTTGCTGGTGCGGCTTTGGCCTTTGACTT
JMFF046P10+ CTCCACCTTAGGCTTGGGCTGAACAACCTTCTTTGCTGGTGCGGCTTTGGCCTTTGACTT
JMFF033K22+ CTCCACCTTAGGCTTGGGCTGAACAACCTTCTTTGCTGGTGCGGCTTTGGCCTTTGACTT
JMFF042P24+ CTCCACCTTAGGCTTGGGCTGAACAACCTTCTTTGCTGGTGCGGCTTTGGCCTTTGACTT
JMSF012K11+ CTCCACCTTAGGCTTGGGCTGAACAACCTTCTTTGCTGGTGCGGCTTTGGCCTTTGACTT
JMFF010E16+ CTCCACCTTAGGCTTGGGCTGAACAACCTTCTTTGCTGGTGCGGCTTTGGCCTTTGACTT
JMSF047B08+ CTCCACCTTAGGCTTGGGCTGAACAACCTTCTTTGCTGGTGCGGCTTTGGCCTTTGACTT
JMFF017C17+ CTCCACCTTAGGCTTGGGCTGAACAACCTTCTTTGCTGGTGCGGCTTTGGCCTTTGACTT
____________________________________________________________
consensus CTCCACCTTAGGCTTGGGCTGAACAACCTTCTTTGCTGGTGCGGCTTTGGCCTTTGACTT
. : . : . : . : . : . :
JMFN008L17+ GAAGAGAGCAACAATTCTTGTAGAAGAAAAAGAAGAAGAAGAAGAGGAAGAAGAAGGAAG
JMFF033L21+ GAAGAGAGCAACAATTCTTGTAGAAGAAAAAGAAGAAGAAGAAGAGGAAGAAGAAGGAAG
JMFF029C21+ GAAGAGAGCAACAATTCTTGTAGAAGAAAAAGAAGAAGAAGAAGAGGAAGAAGAAGGAAG
JMFF034H18+ GAAGAGAGCAACAATTCTTGTAGAAGAAAAAGAAGAAGAAGAAGAGGAAGAAGAAGGAAG
JMFF008B10+ GAAGAGAGCAACAATTCTTGTAGAAGAAAAAGAAGAAGAAGAAGAGGAAGAAGAAGGAAG
JMFF046L07+ GAAGAGAGCAACAATTCTTGTAGAAGAAAAAGAAGAAGAAGAAGAGGAAGAAGAAGGAAG
JMFF025B20+ GAAGAGAGCAACAATTCTTGTAGAAGAAAAAGAAGAAGAAGAAGAGGAAGAAGAAGGAAG
JMFF046P10+ GAAGAGAGCAACAATTCTTGTAGAAGAAAAAGAAGAAGAAGAAGAGGAAGAAGAAGGAAG
JMFF033K22+ GAAGAGAGCAACAATTCTTGTAGAAGAAAAAGAAGAAGAAGAAGAGGAAGAAGAAGGAAG
JMFF042P24+ GAAGAGAGCAACAATTCTTGTAGAAGAAAAAGAAGAAGAAGAAGAGGAAGAAGAAGGAAG
JMSF012K11+ GAAGAGAGCAACAATTCTTGTAGAAGAAAAAGAAGAAGAAGAAGAGGAAGAAGAAGGAAG
JMFF010E16+ GAAGAGAGCAACAATTCTTGTAGAAGAAAAAGAAGAAGAAGAAGAGGAAGAAGAAGGAAG
JMSF047B08+ GAAGAGAGCAACAATTCTTGTAGAAGAAAAAGAAGAAGAAGAAGAGGAAGAAGAAGGAAG
JMFF017C17+ GAAGAGAGCAACAATTCTTGTAGAAGAAAAAGAAGAAGAAGAAGAGGAAGAAGAAGGAAG
____________________________________________________________
consensus GAAGAGAGCAACAATTCTTGTAGAAGAAAAAGAAGAAGAAGAAGAGGAAGAAGAAGGAAG
. : . : . : . : . : . :
JMFN008L17+ GGGCAAGAGAAAATGTTGTTGGATTGATGGCTTTGGTTTTAGGGTTTGAAGGAAAGTGGA
JMFF033L21+ GGGCAAGAGAAAATGTTGTTGGATTGATGGCTTTGGTTTTAGGGTTTGAAGGAAAGTGGA
JMFF029C21+ GGGCAAGAGAAAATGTTGTTGGATTGATGGCTTTGGTTTTAGGGTTTGAAGGAAAGTGGA
JMFF034H18+ GGGCAAGAGAAAATGTTGTTGGATTGATGGCTTTGGTTTTAGGGTTTGAAGGAAAGTGGA
JMFF008B10+ GGGCAAGAGAAAATGTTGTTGGATTGATGGCTTTGGTTTTAGGGTTTGAAGGAAAGTGGA
JMFF046L07+ GGGCAAGAGAAAATGTTGTTGGATTGATGGCTTTGGTTTTAGGGTTTGAAGGAAAGTGGA
JMFF025B20+ GGGCAAGAGAAAATGTTGTTGGATTGATGGCTTTGGTTTTAGGGTTTGAAGGAAAGTGGA
JMFF046P10+ GGGCAAGAGAAAATGTTGTTGGATTGATGGCTTTGGTTTTAGGGTTTGAAGGAAAGTGGA
JMFF033K22+ GGGCAAGAGAAAATGTTGTTGGATTGATGGCTTTGGTTTTAGGGTTTGAAGGAAAGTGGA
JMFF042P24+ GGGCAAGAGAAAATGTTGTTGGATTGATGGCTTTGGTTTTAGGGTTTGAAGGAAAGTGGA
JMSF012K11+ GGGCAAGAGAAAATGTTGTTGGATTGATGGCTTTGGTTTTAGGGTTTGAAGGAAAGTGGA
JMFF010E16+ GGGCAAGAGAAAATGTTGTTGGATTGATGGCTTTGGTTTTAGGGTTTGAAGGAAAGTGGA
JMSF047B08+ GGGCAAGAGAAAATGTTGTTGGATTGATGGCTTTGGTTTTAGGGTTTGAAGGAAAGTGGA
JMFF017C17+ GGGCAAGAGAAAATGTTGTTGGATTGATGGCTTTGGTTTTAGGGTTTGAAGGAAAGTGGA
____________________________________________________________
consensus GGGCAAGAGAAAATGTTGTTGGATTGATGGCTTTGGTTTTAGGGTTTGAAGGAAAGTGGA
. : . : . : . : . : . :
JMFN008L17+ TTGTCTCTTGAGGTCCAATGCAGGGGAAGAAGCACTGGCAGTGAGCAACAT
JMFF033L21+ TTGTCTCTTGAGGTCCAATGCAGGGGAAGAAGCACTGGCAGTGAGCAACATGGTTTGAGC
JMFF029C21+ TTGTCTCTTGAGGTCCAATGCAGGGGAAGAAGCACTGGCAGTGAGCAACATGGTTTGAGC
JMFF034H18+ TTGTCTCTTGAGGTCCAATGCAGGGGAAGAAGCACTGGCAGTGAGCAACATGGTTTGAGC
JMFF008B10+ TTGTCTCTTGAGGTCCAATGCAGGGGAAGAAGCACTGGCAGTGAGCAACATGGTTTGAGC
JMFF046L07+ TTGTCTCTTGAGGTCCAATGCAGGGGAAGAAGCACTGGCAGTGAGCAACATGGT-TGAGC
JMFF025B20+ TTGTCTCTTGAGGTCCAATGCAGGGGAAGAAGCACTGGCAGTGAGCAACATGGTTTGAGC
JMFF046P10+ TTGTCTCTTGAGGTCCAATGCAGGGGAAGAAGCACTGGCAGTGAGCAACATGGTNTGAGC
JMFF033K22+ TTGTCTCTTGAGGTCCAATGCAGGGGAAGAAGCACTGGCAGTGAGCAACATGGTTTGAGC
JMFF042P24+ TTGTCTCTTGAGGTCCAATGCAGGGGAAGAAGCACTGGCAGTGAGCAACATGGTTTGAGC
JMSF012K11+ TTGTCTCTTGAGGTCCAATGCAGGGGAAGAAGCACTGGCAGTGAGCAACATGGTTTGAGC
JMFF010E16+ TTGTCTCTTGAGGTCCAATGCAGGGGAAGAAGCACTGGCAGTGAGCAACATGGTTTGAGC
JMSF047B08+ TTGTCTCTTGAGGTCCAATGCAGGGGAAGAAGCACTGGCAGTGAGCAACATGGTTTGAGC
JMFF017C17+ TTGTCTCTTGAGGTCCAATGCAGGGGAAGAAGCACTGGCAGTGAGCNACATGGTTTGAGC
____________________________________________________________
consensus TTGTCTCTTGAGGTCCAATGCAGGGGAAGAAGCACTGGCAGTGAGCAACATGGTTTGAGC
. : . : . : . : . : . :
JMFF033L21+ CATCAGATCTCTCTCTC
JMFF029C21+ CATCAGATCTCTCTC
JMFF034H18+ CATCAGATCTCTCTCTTTT
JMFF008B10+ CATCAGATCTCT
JMFF046L07+ CATCAGATCTCTCTCTC
JMFF025B20+ CATCAGATCTCTCTCTC
JMFF046P10+ CATCAGATCTCTCTCTC
JMFF033K22+ CATCAGATCTCTCTCTC
JMFF042P24+ CATCAGATCTCTCTCTTTT
JMSF012K11+ CATCAGATCTCTCTCTTTT
JMFF010E16+ CATCAGATCTCTCTCTTTTCTTTAATTTCTTGGTGTTTTGTATATTTTATACACACACAC
JMSF047B08+ CATCAGATCTCTCTCTTTTCTTTAATTTCTTGGTGTTTTGTATATTTTATACACACACAC
JMFF017C17+ CATCAGATCTCTCTCTTTTCTTTAATTTCTTGGTGTTTTGTATATTTTATACACACACAC
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consensus CATCAGATCTCTCTCTTTTCTTTAATTTCTTGGTGTTTTGTATATTTTATACACACACAC
. : . : . : . : . : . :
JMFF010E16+ ACACAAGT
JMSF047B08+ ACACAAGTTTAGAGAACTAGAATTTTGGTTTTGTTTTTCTTTTTGGTATACACATCAC
JMFF017C17+ ACACAAGTTTAGAGAACTAGAATTTTGGTTTTGTTTTTCTTTTTGGTATACACATCACAT
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consensus ACACAAGTTTAGAGAACTAGAATTTTGGTTTTGTTTTTCTTTTTGGTATACACATCACAT