clone | seq. | 5'-sequence | 3'-sequence | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
JMFF002E21 | Sequence | 560 | 007360 (9) | emb|CDP18577.1| | 2e-77 | unnamed protein product [Coffea canephora] | 792 | 007360 (9) | ref|XP_007014648.1| | 8e-47 | Uncharacterized protein TCM_039966 [Theobroma cacao] gb|EOY32267.1| Uncharacteri |
JMFF020L03 | Sequence | 592 | 007360 (9) | emb|CDP18577.1| | 8e-79 | unnamed protein product [Coffea canephora] | 753 | 007360 (9) | ref|XP_009617840.1| | 208 | PREDICTED: uncharacterized protein LOC104110119, partial [Nicotiana tomentosifo |
JMFF033P10 | Sequence | 591 | 007360 (9) | emb|CDP18577.1| | 3e-83 | unnamed protein product [Coffea canephora] | 805 | 007360 (9) | ref|XP_009787718.1| | 229 | PREDICTED: uncharacterized protein LOC104235612 [Nicotiana sylvestris] |
JMFF040D24 | Sequence | 544 | 007360 (9) | emb|CDP18577.1| | 6e-75 | unnamed protein product [Coffea canephora] | 808 | 007360 (9) | ref|XP_009787718.1| | 236 | PREDICTED: uncharacterized protein LOC104235612 [Nicotiana sylvestris] |
JMFN019M03 | Sequence | 626 | 007360 (9) | emb|CDP18577.1| | 4e-86 | unnamed protein product [Coffea canephora] |
Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.
SCORE============================================Contig007360============================================1147 1 --------------------------------------------------->JMFF020L03 <-----------------------------------------------------------------rJMFF020L03 32 ---------------------------------------------->JMFF040D24 <----------------------------------------------------------------------rJMFF040D24 32 ----------------------------------------------->JMFF002E21 <--------------------------------------------------------------------rJMFF002E21 32 --------------------------------------------------->JMFF033P10 <---------------------------------------------------------------------rJMFF033P10
The following clones don't have the opposite end in this pair.
------------------------------------------------------>JMFN019M03-