| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF002E21 | Sequence | 560 | 007360 (9) | emb|CDP18577.1| | 2e-77 | unnamed protein product [Coffea canephora] | 792 | 007360 (9) | ref|XP_007014648.1| | 8e-47 | Uncharacterized protein TCM_039966 [Theobroma cacao] gb|EOY32267.1| Uncharacteri |
| JMFF020L03 | Sequence | 592 | 007360 (9) | emb|CDP18577.1| | 8e-79 | unnamed protein product [Coffea canephora] | 753 | 007360 (9) | ref|XP_009617840.1| | 208 | PREDICTED: uncharacterized protein LOC104110119, partial [Nicotiana tomentosifo |
| JMFF033P10 | Sequence | 591 | 007360 (9) | emb|CDP18577.1| | 3e-83 | unnamed protein product [Coffea canephora] | 805 | 007360 (9) | ref|XP_009787718.1| | 229 | PREDICTED: uncharacterized protein LOC104235612 [Nicotiana sylvestris] |
| JMFF040D24 | Sequence | 544 | 007360 (9) | emb|CDP18577.1| | 6e-75 | unnamed protein product [Coffea canephora] | 808 | 007360 (9) | ref|XP_009787718.1| | 236 | PREDICTED: uncharacterized protein LOC104235612 [Nicotiana sylvestris] |
| JMFN019M03 | Sequence | 626 | 007360 (9) | emb|CDP18577.1| | 4e-86 | unnamed protein product [Coffea canephora] | |||||
This contig is upended
. : . : . : . : . : . :
rJMFF020L03- GATGCCT
rJMFF002E21- TGCCT
rJMFF033P10- TGCCT
rJMFF040D24- TGCCT
____________________________________________________________
consensus GATGCCT
. : . : . : . : . : . :
rJMFF020L03- CTATTATGAACAAACATTTCAATGTTATTACATTTTTCAGATCAAAAGCCGTGGACACAT
rJMFF002E21- CTATTATGAACAAACATTTCAATGTTATTACATTTTTCAGATCAAAAGCCGTGGACACAT
rJMFF033P10- CTATTATGAACAAACATTTCAATGTTATTACATTTTTCAGATCAAAAGCCGTGGACACAT
rJMFF040D24- CTATTATGAACAAACATTTCAATGTTATTACATTTTTCAGATCAAAAGCCGTGGACACAT
____________________________________________________________
consensus CTATTATGAACAAACATTTCAATGTTATTACATTTTTCAGATCAAAAGCCGTGGACACAT
. : . : . : . : . : . :
rJMFF020L03- TAATTAGTCCTGTTTTTATATTTTAGCAGGGCAGAAGAGGATCAAAAGAGATCGACTTCT
rJMFF002E21- TAATTAGTCCTGTTTTTATATTTTAGCAGGGCAGAAGAGGATCAAAAGAGATCGACTTCT
rJMFF033P10- TAATTAGTCCTGTTTTTATATTTTAGCAGGGCAGAAGAGGATCAAAAGAGATCGACTTCT
rJMFF040D24- TAATTAGTCCTGTTTTTATATTTTAGCAGGGCAGAAGAGGATCAAAAGAGATCGACTTCT
____________________________________________________________
consensus TAATTAGTCCTGTTTTTATATTTTAGCAGGGCAGAAGAGGATCAAAAGAGATCGACTTCT
. : . : . : . : . : . :
rJMFF020L03- GCACACTCTGCTACAGCTTTCTCATTACTAAACCAAAAGAGAAATATAGGTATGATTCAG
rJMFF002E21- GCACACTCTGCTACAGCTTTCTCATTACTAAACCAAAAGAGAAATATAGGTATGATTCAG
rJMFF033P10- GCACACTCTGCTACAGCTTTCTCATTACTAAACCAAAAGAGAAATATAGGTATGATTCAG
rJMFF040D24- GCACACTCTGCTACAGCTTTCTCATTACTAAACCAAAAGAGAAATATAGGTATGATTCAG
____________________________________________________________
consensus GCACACTCTGCTACAGCTTTCTCATTACTAAACCAAAAGAGAAATATAGGTATGATTCAG
. : . : . : . : . : . :
rJMFF020L03- CTCACCCAGAAAGCATTCCAGGTTAGAAGGCTATTATTGGGCTATTACAGTATCAAACAA
rJMFF002E21- CTCACCCAGAAAGCATTCCAGGTTAGAAGGCTATTATTGGGCTATTACAGTATCAAACAA
rJMFF033P10- CTCACCCAGAAAGCATTCCAGGTTAGAAGGCTATTATTGGGCTATTACAGTATCAAACAA
rJMFF040D24- CTCACCCAGAAAGCATTCCAGGTTAGAAGGCTATTATTGGGCTATTACAGTATCAAACAA
____________________________________________________________
consensus CTCACCCAGAAAGCATTCCAGGTTAGAAGGCTATTATTGGGCTATTACAGTATCAAACAA
. : . : . : . : . : . :
rJMFF020L03- GTTTTAAAGCATTTCTTCCTATTTTAGCTGTTCCAAATCGCAACCTGAATTTAACACATC
rJMFF002E21- GTTTTAAAGCATTTCTTCCTATTTTAGCTGTTCCAAATCGCAACCTGAATTTAACACATC
rJMFF033P10- GTTTTAAAGCATTTCTTCCTATTTTAGCTGTTCCAAATCGCAACCTGAATTTAACACATC
rJMFF040D24- GTTTTAAAGCATTTCTTCCTATTTTAGCTGTTCCAAATCGCAACCTGAATTTAACACATC
____________________________________________________________
consensus GTTTTAAAGCATTTCTTCCTATTTTAGCTGTTCCAAATCGCAACCTGAATTTAACACATC
. : . : . : . : . : . :
rJMFF020L03- CTTTTGTAGAAAAATGAATGGATATTTAATTGTTAAGGTAATCTTGTCACACGGGAACAC
rJMFF002E21- CTTTTGTAGAAAAATGAATGGATATTTAATTGTTAAGGTAATCTTGTCACACGGGAACAC
rJMFF033P10- CTTTTGTAGAAAAATGAATGGATATTTAATTGTTAAGGTAATCTTGTCACACGGGAACAC
rJMFF040D24- CTTTTGTAGAAAAATGAATGGATATTTAATTGTTAAGGTAATCTTGTCACACGGGAACAC
____________________________________________________________
consensus CTTTTGTAGAAAAATGAATGGATATTTAATTGTTAAGGTAATCTTGTCACACGGGAACAC
. : . : . : . : . : . :
rJMFF020L03- CTAATTCTGAAATCTTAACAATTCTTTTATCCATTGCAGCCTTTTGTTGTCTGAGATGTG
rJMFF002E21- CTAATTCTGAAATCTTAACAATTCTTTTATCCATTGCAGCCTTTTGTTGTCTGAGATGTG
rJMFF033P10- CTAATTCTGAAATCTTAACAATTCTTTTATCCATTGCAGCCTTTTGTTGTCTGAGATGTG
rJMFF040D24- CTAATTCTGAAATCTTAACAATTCTTTTATCCATTGCAGCCTTTTGTTGTCTGAGATGTG
____________________________________________________________
consensus CTAATTCTGAAATCTTAACAATTCTTTTATCCATTGCAGCCTTTTGTTGTCTGAGATGTG
. : . : . : . : . : . :
rJMFF020L03- ATGCCATAGAAGCAACCTCTGCTCTTAATTTAAGAGGCTCTCTACCAGGAATTTCCCGCA
rJMFF002E21- ATG-CATAGAAGCAACCTCTGCTCTTAATTTAAGAGGCTCTCTACCAGGAATTTCCCGCA
rJMFF033P10- ATGCCATAGAAGCAACCTCTGCTCTTAATTTAAGAGGCTCTCTACCAGGAATTTCCCGCA
rJMFF040D24- ATGCCATAGAAGCAACCTCTGCTCTTAATTTAAGAGGCTCTCTACCAGGAATTTCCCGCA
____________________________________________________________
consensus ATGCCATAGAAGCAACCTCTGCTCTTAATTTAAGAGGCTCTCTACCAGGAATTTCCCGCA
. : . : . : . : . : . :
rJMFF020L03- GCAGATCCATCAAATCAGTAGCTTGAGCTTCGGCCTTATTGACAGCTTTCGCAAGACTTT
rJMFF002E21- GCAGATCCATCAAATCAGTAGCTTGAGCTTCGGCCTTATTGACAGCTTTCGCAAGACTTT
rJMFF033P10- GCAGATCCATCAAATCAGTAGCTTGAGCTTCGGCCTTATTGACAGCTTTCGCAAGACTTT
rJMFF040D24- GCAGATCCATCAAATCAGTAGCTTGAGCTTCGGCCTTATTGACAGCTTTCGCAAGACTTT
JMFF033P10+ TGACAGCTTTCGCAAGACTTT
JMFN019M03+ TAGCTTGAGCTTCGGCCTTATTGACAGCTTTCGCAAGACTTT
____________________________________________________________
consensus GCAGATCCATCAAATCAGTAGCTTGAGCTTCGGCCTTATTGACAGCTTTCGCAAGACTTT
. : . : . : . : . : . :
rJMFF020L03- GAATACGAGTTCCAGCATTCATGAGTTCAGAATGGCCACGTTTCATTTCCGTATGAGCTA
rJMFF002E21- GAATACGAGTTCCAGCATTCATGAGTTCAGAATGGCCACGTTTCATTTCCGTATGAGCTA
rJMFF033P10- GAATACGAGTTCCAGCATTCATGAGTTCAGAATGGCCACGTTTCATTTCCGTATGAGCTA
rJMFF040D24- GAATACGAGTTCCAGCATTCATGAGTTCAGAATGGCCACGTTTCATTTCCGTATGAGCTA
JMFF033P10+ GAATACGAGTTCCAGCATTCATGAGTTCAGAATGGCCACGTTTCATTTCCGTATGAGCTA
JMFF040D24+ TCAGAATGNCCACGTTTCATTTCCGTATGAGCTA
JMFF002E21+ ATTCATGAGTTCAGAATGGCCACGTTTCATTTCCGTATGAGCTA
JMFN019M03+ GAATACGAGTTCCAGCATTCATGAGTTCAGAATGGCCACGTTTCATTTCCGTATGAGCTA
JMFF020L03+ AGTTCCAGCATTCATGAGTTCAGAATGGCCACGTTTCATTTCCGTATGAGCTA
____________________________________________________________
consensus GAATACGAGTTCCAGCATTCATGAGTTCAGAATGGCCACGTTTCATTTCCGTATGAGCTA
. : . : . : . : . : . :
rJMFF020L03- GAGCTGCCCTTTCAAACAGTTTTCCGCTCTCCTTCTTCATTAAATCAACAGAAAGCCTCA
rJMFF002E21- GAGCTGCCCTTTCAAACAGTTTTCCGCTCTCCTTCTTCATTAAATCAACAGAAAGCCTCA
rJMFF033P10- GAGCTGCCCTTTCAAACAGTTTTCCGCTCTCCTTCTTCATTAAATCAACAGAAAGCCTCA
rJMFF040D24- GAGCTGCCCTTTCAAACAGTTTTCCGCTCTCCTTCTTCATTAAATCAACAGAAAGCCTCA
JMFF033P10+ GAGCTGCCCTTTCAAACAGTTTTCCGCTCTCCTTCTTCATTAAATCAACAGAAAGCCTCA
JMFF040D24+ GAGCTGCCCTTTCAAACAGTTTTCCGCTCTCCTTCTTCATTAAATCAACAGAAAGCCTCA
JMFF002E21+ GAGCTGCCCTTTCAAACAGTTTTCCGCTCTCCTTCTTCATTAAATCAACAGAAAGCCTCA
JMFN019M03+ GAGCTGCCCTTTCAAACAGTTTTCCGCTCTCCTTCTTCATTAAATCAACAGAAAGCCTCA
JMFF020L03+ GAGCTGCCCTTTCAAACAGTTTTCCGCTCTCCTTCTTCATTAAATCAACAGAAAGCCTCA
____________________________________________________________
consensus GAGCTGCCCTTTCAAACAGTTTTCCGCTCTCCTTCTTCATTAAATCAACAGAAAGCCTCA
. : . : . : . : . : . :
rJMFF020L03- ACTCTTTCACATTCTTCTCCGCTTTATTAAATTGTGCCTCCTCACTTCGAAAGCGGCCTA
rJMFF002E21- ACTCTTTCACATTCTTCTCCGCTTTATTAAATTGTGCCTCCTCACTTCGAAAGCGGCCTA
rJMFF033P10- ACTCTTTCACATTCTTCTCCGCTTTATTAAATTGTGCCTCCTCACTTCGAAAGCGGCCTA
rJMFF040D24- ACTCTTTCACATTCTTCTCCGCTTTATTAAATTGTGCCTCCTCACTTCGAAAGCGGCCTA
JMFF033P10+ ACTCTTTCACATTCTTCTCCGCTTTATTAAATTGTGCCTCCTCACTTCGAAAGCGGCCTA
JMFF040D24+ ACTCTTTCACATTCTTCTCCGCTTTATTAAATTGTGCCTCCTCACTTCGAAAGCGGCCTA
JMFF002E21+ ACTCTTTCACATTCTTCTCCGCTTTATTAAATTGTGCCTCCTCACTTCGAAAGCGGCCTA
JMFN019M03+ ACTCTTTCACATTCTTCTCCGCTTTATTAAATTGTGCCTCCTCACTTCGAAAGCGGCCTA
JMFF020L03+ ACTCTTTCACATTCTTCTCCGCTTTATTAAATTGTGCCTCCTCACTTCGAAAGCGGCCTA
____________________________________________________________
consensus ACTCTTTCACATTCTTCTCCGCTTTATTAAATTGTGCCTCCTCACTTCGAAAGCGGCCTA
. : . : . : . : . : . :
rJMFF020L03- AAGTATTGCGAAACAG-AAATCTTCTA
rJMFF002E21- AAGTATTGCGAAACAGAAAATCTTCTANGTCCTCTCATGAATATGAGTCCAGTAGCAACA
rJMFF033P10- AAGTATTGCGAAACAG-AAATCTTCTANGTCCTCTCATGAATATGAGTCCAGTAGCAACA
rJMFF040D24- AAGTATTGCGAAACAG-AAATCTTCTAGGTCCTCTCATGAATATGAGTCCAGTAGCAACA
JMFF033P10+ AAGTATTGCGAAACAG-AAATCTTCTAGGTCCTCTCATGAATATGAGTCCAGTAGCAACA
JMFF040D24+ AAGTATTGCGAAACAG-AAATCTTCTAGGTCCTCTCATGAATATGAGTCCAGTAGCAACA
JMFF002E21+ AAGTATTGCGAAACAG-AAATCTTCTAGGTCCTCTCATGAATATGAGTCCAGTAGCAACA
JMFN019M03+ AAGTATTGCGAAACAG-AAATCTTCTAGGTCCTCTCATGAATATGAGTCCAGTAGCAACA
JMFF020L03+ AAGTATTGCGAAACAG-AAATCTTCTAGGTCCTCTCATGAATATGAGTCCAGTAGCAACA
____________________________________________________________
consensus AAGTATTGCGAAACAG-AAATCTTCTAGGTCCTCTCATGAATATGAGTCCAGTAGCAACA
. : . : . : . : . : . :
rJMFF002E21- GCAATT
rJMFF033P10- GCAATTCCACCAACTACAGC
rJMFF040D24- GCAATTCCACCAACTACAGCAGGA
JMFF033P10+ GCAATTCCACCAACTACAGCAGGATGTTCTCTCGCAATTTCAACTTCATCTTTAACTTTC
JMFF040D24+ GCAATTCCACCAACTACAGCAGGATGTTCTCTCGCAATTTCAACTTCATCTTTAACTTTC
JMFF002E21+ GCAATTCCACCAACTACAGCAGGATGTTCTCTCGCAATTTCAACTTCATCTTTAACTTTC
JMFN019M03+ GCAATTCCACCAACTACAGCAGGATGTTCTCTCGCAATTTCAACTTCATCTTTAACTTTC
JMFF020L03+ GCAATTCCACCAACTACAGCAGGATGTTCTCTCGCAATTTCAACTTCATCTTTAACTTTC
____________________________________________________________
consensus GCAATTCCACCAACTACAGCAGGATGTTCTCTCGCAATTTCAACTTCATCTTTAACTTTC
. : . : . : . : . : . :
JMFF033P10+ TGGAATAAAGCATCTTCATAAGCTTTATACTGTGAACTCAATTGAGGAAGAAAATCCTGA
JMFF040D24+ TGGAATAAAGCATCTTCATAAGCTTTATACTGTGAACTCAATTGAGGAAGAAAATCCTGA
JMFF002E21+ TGGAATAAAGCATCTTCATAAGCTTTATACTGTGAACTCAATTGAGGAAGAAAATCCTGA
JMFN019M03+ TGGAATAAAGCATCTTCATAAGCTTTATACTGTGAACTCAATTGAGGAAGAAAATCCTGA
JMFF020L03+ TGGAATAAAGCATCTTCATAAGCTTTATACTGTGAACTCAATTGAGGAAGAAAATCCTGA
____________________________________________________________
consensus TGGAATAAAGCATCTTCATAAGCTTTATACTGTGAACTCAATTGAGGAAGAAAATCCTGA
. : . : . : . : . : . :
JMFF033P10+ AGAGAGCGAAGGTGACCGGAGGAGGTGTTCTGGAATAAACGCGCGGAGCGAATGGCGGAA
JMFF040D24+ AGAGAGCGAAGGTGACCGGAGGAGGTGTTCTGGAATAAACGCGCGGAGCGAATGGCGGAA
JMFF002E21+ AGAGAGCGAAGGTGACCGGAGGAGGTGTTCTGGAATAAACGCGCGGAGCGAATGGCGGAA
JMFN019M03+ AGAGAGCGAAGGTGACCGGAGGAGGTGTTCTGGAATAAACGCGCGGAGCGAATGGCGGAA
JMFF020L03+ AGAGAGCGAAGGTGACCGGAGGAGGTGTTCTGGAATAAACGCGCGGAGCGAATGGCGGAA
____________________________________________________________
consensus AGAGAGCGAAGGTGACCGGAGGAGGTGTTCTGGAATAAACGCGCGGAGCGAATGGCGGAA
. : . : . : . : . : . :
JMFF033P10+ TCGGTGGACTCTTGGACGGTGCGAGGCAGATCCTCTGAGATATAAGCGTGCCATGGCTTA
JMFF040D24+ TCGGTGGACTCTTGGACGGTGCGAGGCAGATCCTCTGAGATATAAGCGTGCCATGGCTTA
JMFF002E21+ TCGGTGGACTCTTGGACGGTGCGAGGCAGATCCTCTGAGATATAAGCGTGCCATGGCTTA
JMFN019M03+ TCGGTGGACTCTTGGACGGTGCGAGGCAGATCCTCTGAGATATAAGCGTGCCATGGCTTA
JMFF020L03+ TCGGTGGACTCTTGGACGGTGCGAGGCAGATCCTCTGAGATATAAGCGTGCCATGGCTTA
____________________________________________________________
consensus TCGGTGGACTCTTGGACGGTGCGAGGCAGATCCTCTGAGATATAAGCGTGCCATGGCTTA
. : . : . : . : . : . :
JMFF033P10+ TCTCGTTGCTGTGGTGTCGCCGCCGGCGCCGGCGATGAGGTCTCGTCGATCTCAGTCGAA
JMFF040D24+ TCTCGTTGCTGTGGTGTCGCCGCCGGCGCCGGCGATGAGGTCTCGTCGATCTCAGTCGAA
JMFF002E21+ TCTCGTTGCTGTGGTGTCGCCGCCGGCGCCGGCGATGAGGTCTCGTCGATCTCAGTCGAA
JMFN019M03+ TCTCGTTGCTGTGGTGTCGCCGCCGGCGCCGGCGATGAGGTCTCGTCGATCTCAGTCGAA
JMFF020L03+ TCTCGTTGCTGTGGTGTCGCCGCCGGCGCCGGCGATGAGGTCTCGTCGATCTCAGTCGAA
____________________________________________________________
consensus TCTCGTTGCTGTGGTGTCGCCGCCGGCGCCGGCGATGAGGTCTCGTCGATCTCAGTCGAA
. : . : . : . : . : . :
JMFF033P10+ GGAACGTCGCTTGCCATCTCCTTCAATCTC
JMFF040D24+ GGAACGTCGCTTGCCATCTCCTTCAATCTC
JMFF002E21+ GGAACGTCGCTTGCCATCTCCTTCAATCTC
JMFN019M03+ GGAACGTCGCTTGCCATCTCCTTCAATCTCTGTAGGTTCTACTTG
JMFF020L03+ GGAACGTCGCTTGCCATCTCCTTCAATCTCTGTAGGTTCTACTTGGCGGAGGCGCAGATC
____________________________________________________________
consensus GGAACGTCGCTTGCCATCTCCTTCAATCTCTGTAGGTTCTACTTGGCGGAGGCGCAGATC