List of clones in pair P013893.

clone	seq.	5'-sequence					3'-sequence
clone	seq.	length	contig	BestHit	Evalue	description	length	contig	BestHit	Evalue	description
JMFF005I10	Sequence	419	003693 (32)	emb\|CDY59177.1\|	3e-88	BnaC08g50110D [Brassica napus]	586	003693 (32)	emb\|CDY59177.1\|	2e-94	BnaC08g50110D [Brassica napus]
JMFF015J03	Sequence	591	003693 (32)	emb\|CDY59177.1\|	1e-93	BnaC08g50110D [Brassica napus]	567	003693 (32)	emb\|CDY59177.1\|	9e-94	BnaC08g50110D [Brassica napus]
JMFF016B16	Sequence	604	003693 (32)	emb\|CDY59177.1\|	3e-94	BnaC08g50110D [Brassica napus]	624	003693 (32)	ref\|XP_009773907.1\|	6e-64	PREDICTED: 60S ribosomal protein L23-like isoform X3 [Nicotiana sylvestris]
JMFF021D03	Sequence						553	003693 (32)	emb\|CDY59177.1\|	1e-88	BnaC08g50110D [Brassica napus]
JMFF025C11	Sequence	609	003693 (32)	emb\|CDY59177.1\|	3e-94	BnaC08g50110D [Brassica napus]	585	003693 (32)	gb\|KCW60243.1\|	1e-68	hypothetical protein EUGRSUZ_H02959 [Eucalyptus grandis]
JMFF048I12	Sequence	422	003693 (32)	emb\|CDY59177.1\|	2e-89	BnaC08g50110D [Brassica napus]	344	003693 (32)
JMFF049M03	Sequence	477	003693 (32)	emb\|CDY59177.1\|	1e-94	BnaC08g50110D [Brassica napus]	312	003693 (32)	emb\|CDY49340.1\|	1e-22	BnaA05g33020D [Brassica napus] emb\|CDY21127.1\| BnaA01g33580D [Brassica napus] em
JMFN012J13	Sequence	597	003693 (32)	emb\|CDY59177.1\|	3e-94	BnaC08g50110D [Brassica napus]
JMFN013M07	Sequence	553	003693 (32)	emb\|CDY59177.1\|	2e-94	BnaC08g50110D [Brassica napus]
JMFN015I12	Sequence	561	003693 (32)	emb\|CDY59177.1\|	3e-94	BnaC08g50110D [Brassica napus]
JMFN020M03	Sequence	556	003693 (32)	ref\|NP_001274965.1\|	6e-94	ribosomal protein L17-like protein [Solanum tuberosum] ref\|XP_002301852.1\| hypot
JMFN037K06	Sequence	581	003693 (32)	ref\|NP_001274965.1\|	7e-94	ribosomal protein L17-like protein [Solanum tuberosum] ref\|XP_002301852.1\| hypot
JMFN043J16	Sequence	564	003693 (32)	emb\|CDY59177.1\|	3e-94	BnaC08g50110D [Brassica napus]
JMFN044H24	Sequence	561	003693 (32)	emb\|CDY59177.1\|	2e-94	BnaC08g50110D [Brassica napus]
JMSF004I15	Sequence	376	003693 (32)	emb\|CDY59177.1\|	6e-74	BnaC08g50110D [Brassica napus]	403	003693 (32)	gb\|EMT07675.1\|	1e-72	60S ribosomal protein L23 [Aegilops tauschii]
JMSF005M04	Sequence	346	003693 (32)	ref\|XP_010023856.1\|	217	PREDICTED: 60S ribosomal protein L23 isoform X2 [Eucalyptus grandis]
JMSF007M04	Sequence						189	003693 (32)
JMSF013N13	Sequence	230	003693 (32)	gb\|KCW60244.1\|	8e-33	hypothetical protein EUGRSUZ_H02959 [Eucalyptus grandis]	561	003693 (32)	emb\|CDY59177.1\|	2e-94	BnaC08g50110D [Brassica napus]
JMSF019G22	Sequence	474	003693 (32)	emb\|CDY59177.1\|	6e-94	BnaC08g50110D [Brassica napus]	555	003693 (32)	emb\|CDY59177.1\|	1e-94	BnaC08g50110D [Brassica napus]
JMSF025I22	Sequence	594	003693 (32)	emb\|CDY59177.1\|	2e-94	BnaC08g50110D [Brassica napus]	545	003693 (32)	emb\|CDY59177.1\|	1e-94	BnaC08g50110D [Brassica napus]
JMSF041P12	Sequence	730	003693 (32)	emb\|CDY59177.1\|	1e-93	BnaC08g50110D [Brassica napus]	704	003693 (32)	emb\|CDY59177.1\|	1e-93	BnaC08g50110D [Brassica napus]

Contig 3693 BLAST Hits against nr-aa DB Show

Alignment

Explanatory notes: "*" The opposite end is in another contig. "**" The opposite end is in same contig. "#" The opposite end is singlet. "-" The opposite end has no seqence.

SCORE============================================Contig003693============================================ 738         
  10  -------------------------------------------------------->JMFF048I12                                             
                                                           <----------------------------------------------rJMFF048I12  
  48  ----------------------------------------------------------------------------------------------->JMSF041P12      
      <--------------------------------------------------------------------------------------------rJMSF041P12  
 119  --------------------------------------------------------------->JMFF049M03                                      
                                                <-----------------------------------------rJMFF049M03  
 130  --------------------------------------------------------------------------------->JMFF016B16                    
      <---------------------------------------------------------------------------------rJMFF016B16  
 156 -------------------------------------------------------->JMFF005I10                                              
     <------------------------------------------------------------------------------rJMFF005I10  
 158  -------------------------------------------------------------------------------->JMFF025C11                     
      <------------------------------------------------------------------------------rJMFF025C11  
 173  ------------------------------------------------------------------------------->JMFF015J03                      
      <----------------------------------------------------------------------------rJMFF015J03  
 183 --------------------------------------------------------------->JMSF019G22                                       
     <--------------------------------------------------------------------------rJMSF019G22  
 193 ------------------------------------------------------------------------------->JMSF025I22                       
     <-------------------------------------------------------------------------rJMSF025I22  
 220 ------------------------------------------------>JMSF004I15                                                      
                     <------------------------------------------------------rJMSF004I15  
 226     ------------------------>JMSF013N13                                                                          
         <--------------------------------------------------------------------rJMSF013N13

The following clones don't have the opposite end in this pair.

        --------------------------------------------------------------------------->JMFN044H24-                       
                                                          <-------------------------rJMSF007M04-                      
      <--------------------------------------------------------------------------rJMFF021D03-                         
        --------------------------------------------------------------------------->JMFN015I12-                       
        -------------------------------------------------------------------------------->JMFN012J13-                  
         --------------------------------------------------------------------------->JMFN020M03-                      
        ---------------------------------------------------------------------------->JMFN043J16-                      
         ------------------------------------------------------------------------------>JMFN037K06-                   
        -------------------------------------------------------------------------->JMFN013M07-                        
      ---------------------------------------------->JMSF005M04-