| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF005I10 | Sequence | 419 | 003693 (32) | emb|CDY59177.1| | 3e-88 | BnaC08g50110D [Brassica napus] | 586 | 003693 (32) | emb|CDY59177.1| | 2e-94 | BnaC08g50110D [Brassica napus] |
| JMFF015J03 | Sequence | 591 | 003693 (32) | emb|CDY59177.1| | 1e-93 | BnaC08g50110D [Brassica napus] | 567 | 003693 (32) | emb|CDY59177.1| | 9e-94 | BnaC08g50110D [Brassica napus] |
| JMFF016B16 | Sequence | 604 | 003693 (32) | emb|CDY59177.1| | 3e-94 | BnaC08g50110D [Brassica napus] | 624 | 003693 (32) | ref|XP_009773907.1| | 6e-64 | PREDICTED: 60S ribosomal protein L23-like isoform X3 [Nicotiana sylvestris] |
| JMFF021D03 | Sequence | 553 | 003693 (32) | emb|CDY59177.1| | 1e-88 | BnaC08g50110D [Brassica napus] | |||||
| JMFF025C11 | Sequence | 609 | 003693 (32) | emb|CDY59177.1| | 3e-94 | BnaC08g50110D [Brassica napus] | 585 | 003693 (32) | gb|KCW60243.1| | 1e-68 | hypothetical protein EUGRSUZ_H02959 [Eucalyptus grandis] |
| JMFF048I12 | Sequence | 422 | 003693 (32) | emb|CDY59177.1| | 2e-89 | BnaC08g50110D [Brassica napus] | 344 | 003693 (32) | |||
| JMFF049M03 | Sequence | 477 | 003693 (32) | emb|CDY59177.1| | 1e-94 | BnaC08g50110D [Brassica napus] | 312 | 003693 (32) | emb|CDY49340.1| | 1e-22 | BnaA05g33020D [Brassica napus] emb|CDY21127.1| BnaA01g33580D [Brassica napus] em |
| JMFN012J13 | Sequence | 597 | 003693 (32) | emb|CDY59177.1| | 3e-94 | BnaC08g50110D [Brassica napus] | |||||
| JMFN013M07 | Sequence | 553 | 003693 (32) | emb|CDY59177.1| | 2e-94 | BnaC08g50110D [Brassica napus] | |||||
| JMFN015I12 | Sequence | 561 | 003693 (32) | emb|CDY59177.1| | 3e-94 | BnaC08g50110D [Brassica napus] | |||||
| JMFN020M03 | Sequence | 556 | 003693 (32) | ref|NP_001274965.1| | 6e-94 | ribosomal protein L17-like protein [Solanum tuberosum] ref|XP_002301852.1| hypot | |||||
| JMFN037K06 | Sequence | 581 | 003693 (32) | ref|NP_001274965.1| | 7e-94 | ribosomal protein L17-like protein [Solanum tuberosum] ref|XP_002301852.1| hypot | |||||
| JMFN043J16 | Sequence | 564 | 003693 (32) | emb|CDY59177.1| | 3e-94 | BnaC08g50110D [Brassica napus] | |||||
| JMFN044H24 | Sequence | 561 | 003693 (32) | emb|CDY59177.1| | 2e-94 | BnaC08g50110D [Brassica napus] | |||||
| JMSF004I15 | Sequence | 376 | 003693 (32) | emb|CDY59177.1| | 6e-74 | BnaC08g50110D [Brassica napus] | 403 | 003693 (32) | gb|EMT07675.1| | 1e-72 | 60S ribosomal protein L23 [Aegilops tauschii] |
| JMSF005M04 | Sequence | 346 | 003693 (32) | ref|XP_010023856.1| | 217 | PREDICTED: 60S ribosomal protein L23 isoform X2 [Eucalyptus grandis] | |||||
| JMSF007M04 | Sequence | 189 | 003693 (32) | ||||||||
| JMSF013N13 | Sequence | 230 | 003693 (32) | gb|KCW60244.1| | 8e-33 | hypothetical protein EUGRSUZ_H02959 [Eucalyptus grandis] | 561 | 003693 (32) | emb|CDY59177.1| | 2e-94 | BnaC08g50110D [Brassica napus] |
| JMSF019G22 | Sequence | 474 | 003693 (32) | emb|CDY59177.1| | 6e-94 | BnaC08g50110D [Brassica napus] | 555 | 003693 (32) | emb|CDY59177.1| | 1e-94 | BnaC08g50110D [Brassica napus] |
| JMSF025I22 | Sequence | 594 | 003693 (32) | emb|CDY59177.1| | 2e-94 | BnaC08g50110D [Brassica napus] | 545 | 003693 (32) | emb|CDY59177.1| | 1e-94 | BnaC08g50110D [Brassica napus] |
| JMSF041P12 | Sequence | 730 | 003693 (32) | emb|CDY59177.1| | 1e-93 | BnaC08g50110D [Brassica napus] | 704 | 003693 (32) | emb|CDY59177.1| | 1e-93 | BnaC08g50110D [Brassica napus] |
This contig is upended
. : . : . : . : . : . :
rJMFF048I12- ACCCTGGAGAGTTTTTTT
____________________________________________________________
consensus ACCCTGGAGAGTTTTTTT
. : . : . : . : . : . :
rJMFF048I12- TTTTTTTTTGATAAAATGGAGTTCCAAGTACTAGCTAATTTTTATAGTATAACTCAAGCC
rJMSF041P12- GTACTAGCTAATTTTTATAGTATAACTCAAGCC
JMSF041P12+ TTGATAAAATGGAGTTCCAAGTACTAGCTAATTTTTATAGTATAACTCAAGCC
____________________________________________________________
consensus TTTTTTTTTGATAAAATGGAGTTCCAAGTACTAGCTAATTTTTATAGTATAACTCAAGCC
. : . : . : . : . : . :
rJMFF048I12- ATCAGCAATAACACAATTTGGCACAGCCCAAAGGTGTGAATTCTGCTATTCTTGCAGATT
JMFF016B16+ CTTGCAGATT
rJMSF041P12- ATCAGCAATAACACAATTTGGCACAGCCCAAAGGTGTGAATTCTGCTATTCTTGCAGATT
JMFN012J13+ GAATTCTGCTATTCTTGCAGATT
JMFF025C11+ GATT
JMFN037K06+ CAGATT
rJMFF016B16- TCTTGCAGATT
rJMFF049M03- GGTGTGAATTCTGCTATTCTTGCAGATT
JMSF041P12+ ATCAGCAATAACACAATTTGGCACAGCCCAAAGGTGTGAATTCTGCTATTCTTGCAGATT
____________________________________________________________
consensus ATCAGCAATAACACAATTTGGCACAGCCCAAAGGTGTGAATTCTGCTATTCTTGCAGATT
. : . : . : . : . : . :
rJMFF048I12- TGAAGGATCATTTTGTAAAATTAAAAACTCTAAATCACAAATATAACCTCAGTTAACAAA
JMFF016B16+ TGAAGGATCATTTTGTAAAATTAAAAACTNTAAATCACAAATATAACNTCAGTTAACAAA
rJMSF041P12- TGAAGGATCATTTTGTAAAATTAAAAACTCTAAATCACAAATATAACCTCAGTTAACAAA
JMFN012J13+ TGAAGGATCATTTTGTAAAATTAAAAACTCTAAATCACAAATATAACCTCAGTTAACAAA
JMFF025C11+ TGAAGGATCATTTTGTAAAATTAAAAACTNTAAATCACAAATATAACCTCAGTTAACAAA
rJMFF015J03- AATCACAAATATAACCTCAGTTAACAAA
rJMFF021D03- ATAACCTCAGTTAACANA
JMFF015J03+ TTTTGTAAAATTAAAAACTNTAAATCACAAATATAACCTCAGTTAACAAA
JMFN037K06+ TGAAGGATCATTTTGTAAAATTAAAAACTCTAAATCACAAATATAACCTCAGTTAACAAA
JMFN043J16+ GTAAAATTAAAAACTCTAAATCACAAATATAACCTCAGTTAACAAA
rJMFF016B16- TGAAGGATCATTTTGTAAAATTAAAAACTCTAAATCACAAATATAACCTCAGTTAACAAA
JMFN044H24+ TAAAATTAAAAACTCTAAATCACAAATATAACCTCAGTTAACAAA
JMFN015I12+ AAAATTAAAAACTCTAAATCACAAATATAACCTCAGTTAACAAA
JMFN020M03+ GTAAAATTAAAAACTCTAAATCACAAATATAACCTCAGTTAACAAA
rJMFF049M03- TGAAGGATCATTTTGTAAAATTAAAAACTCTAAATCACAAATATAACCTCAGTTAACAAA
JMSF041P12+ TGAAGGATCATTTTGTAAAATTAAAAACTCTAAATCACAAATATAACCTCAGTTAACAAA
rJMFF025C11- AAATTAAAAACTCTAAATCACAAATATAACCTCAGTTAACAAA
rJMSF019G22- TAACCTCAGTTAACAAA
JMFN013M07+ TAAAAACTCTAAATCACAAATATAACCTCAGTTAACAAA
rJMSF013N13- AA
rJMSF007M04- AATTAAAAACTCTGAATCACTANTATAACCTCAGTTCANAAN
rJMFF005I10- AAATTAAAAACTCTAAATCACAAATATAACCTCAGTTAACAAA
rJMSF025I22- ACAAA
JMSF025I22+ TTTTGTAAAATTAAAAACTCTAAATCACAAATATAACCTCAGTTAACAAA
____________________________________________________________
consensus TGAAGGATCATTTTGTAAAATTAAAAACTCTAAATCACAAATATAACCTCAGTTAACAAA
. : . : . : . : . : . :
rJMFF048I12- ATTCTGACAGCAAATAGTAATGATGTTCATGCACTAACTTTAAATTTCCAAAACTTGGAA
JMFF016B16+ ATTCTGACAGCAAATAGTAATGATGTTCATG-ACTAACTTTAAATTTCCAAAACTTGGAA
rJMSF041P12- ATTCTGACAGCAAATAGTAATGATGTTCATGCACTAACTTTAAATTTCCAAAACTTGGAA
JMFN012J13+ ATTCTGACAGCAAATAGTAATGATGTTCATGCACTAACTTTAAATTTCCAAAACTTGGAA
JMFF025C11+ ATTCTGACAGCAAATAGTAATGATGTTCATGCACTAACTTTAAATTTCCAAAACTTGGAA
rJMFF015J03- ATTCTGACAGCAAATAGTAATGATGTTCATGCACTAACTTTAAATTTCCAAAACTTGGAA
rJMFF021D03- ATTCTGACAGCAAATAGTAATGATGTTCATGCACTAACTTTNAATTTCCAANACTTGGAA
JMFF015J03+ ATTCTGACAGCAAATAGTAATGATGTTCATGCACTAACTTTAAATTTCCAAAACTTGGAA
JMFN037K06+ ATTCTGACAGCAAATAGTAATGATGTTCATGCACTAACTTTAAATTTCCAAAACTTGGAA
JMFN043J16+ ATTCTGACAGCAAATAGTAATGATGTTCATGCACTAACTTTAAATTTCCAAAACTTGGAA
rJMFF016B16- ATTCTGACAGCAAATAGTAATGATGTTCATG-ACTAACTTTAAATTTCCAAAACTTGGAA
JMFN044H24+ ATTCTGACAGCAAATAGTAATGATGTTCATGCACTAACTTTAAATTTCCAAAACTTGGAA
JMFN015I12+ ATTCTGACAGCAAATAGTAATGATGTTCATGCACTAACTTTAAATTTCCAAAACTTGGAA
JMFN020M03+ ATTCTGACAGCAAATAGTAATGATGTTCATGCACTAACTTTAAATTTCCAAAACTTGGAA
rJMFF049M03- ATTCTGACAGCAAATAGTAATGATGTTCATGCACTAACTTTAAATTTCCAAAACTTGGAA
JMSF041P12+ ATTCTGACAGCAAATAGTAATGATGTTCATGCACTAACTTTAAATTTCCAAAACTTGGAA
rJMFF025C11- ATTCTGACAGCAAATAGTAATGATGTTCATGCACTAACTTTAAATTTCCAAAACTTGGAA
rJMSF019G22- ATTCTGACAGCAAATAGTAATGATGTTCATGCACTAACTTTAAATTTCCAAAACTTGGAA
JMFN013M07+ ATTCTGACAGCAAATAGTAATGATGTTCATGCACTAACTTTAAATTTCCAAAACTTGGAA
rJMSF013N13- ATTCTGACAGCAAATAGTAATGATGTTCATGCACTAACTTTAAATTTCCAAAACTTGGAA
JMFF049M03+ A
rJMSF004I15- TGATGTTCATGCACTAACTTTAAATTTCCAAAACTTGGAA
rJMSF007M04- ATTCTGANAGGAAATANTAATGNTGTGCATGCACTAACTTTAAATNTCCNNAACTTGGAA
rJMFF005I10- ATTCTGACAGCAAATAGTAATGATGTTCATGCACTAACTTTAAATTTCCAAAACTTGGAA
rJMSF025I22- ATTCTGACAGCAAATAGTAATGATGTTCATGCACTAACTTTAAATTTCCAAAACTTGGAA
JMSF025I22+ ATTCTGACAGCAAATAGTAATGATGTTCATGCACTAACTTTAAATTTCCAAAACTTGGAA
____________________________________________________________
consensus ATTCTGACAGCAAATAGTAATGATGTTCATGCACTAACTTTAAATTTCCAAAACTTGGAA
. : . : . : . : . : . :
rJMFF048I12- CACACCAAACCAAAAACTACAGATCTTAAACAATAGCATTGGCAGCACTGGCAATCCTAG
JMFF016B16+ CACACCAAACCAAAAACTACAGATCTTAAACAATAGCATTGGCAGCACTGGCAATCCTAG
rJMSF041P12- CACACCAAACCAAAAACTACAGATCTTAAACAATAGCATTGGCAGCACTGGCAATCCTAG
JMFN012J13+ CACACCAAACCAAAAACTACAGATCTTAAACAATAGCATTGGCAGCACTGGCAATCCTAG
JMFF025C11+ CACACCAAACCAAAAACTACAGATCTTAAACAATAGCATTGGCAGCACTGGCAATCCTAG
rJMFF015J03- CACACCAAACCAAAAACTACAGATCTTAAACAATAGCATTGGCAGCACTGGCAATCCTAG
rJMFF021D03- CACACCAAACCAAAAACTACAGATCTTANNCNATAGCATTGGCAGCACTGGCAATCCTAG
JMFF015J03+ CACACCAAACCAAAAACTACAGATCTTAAACAATAGCATTGGCAGCACTGGCAATCCTAG
JMFN037K06+ CACACCAAACCAAAAACTACAGATCTTAAACAATAGCATTGGCAGCACTGGCAATCCTAG
JMFN043J16+ CACACCAAACCAAAAACTACAGATCTTAAACAATAGCATTGGCAGCACTGGCAATCCTAG
rJMFF016B16- CACACCAAACCAAAAACTACAGATCTTAAACAATAGCATTGGCAGCACTGGCAATCCTAG
JMFN044H24+ CACACCAAACCAAAAACTACAGATCTTAAACAATAGCATTGGCAGCACTGGCAATCCTAG
JMFN015I12+ CACACCAAACCAAAAACTACAGATCTTAAACAATAGCATTGGCAGCACTGGCAATCCTAG
JMFN020M03+ CACACCAAACCAAAAACTACAGATCTTAAACAATAGCATTGGCAGCACTGGCAATCCTAG
rJMFF049M03- CACACCAAACCAAAAACTACAGATCTTAAACAATAGCATTGGCAGCACTGGCAATCCTAG
JMSF041P12+ CACACCAAACCAAAAACTACAGATCTTAAACAATAGCATTGGCAGCACTGGCAATCCTAG
rJMFF025C11- CACACCAAACCAAAAACTACAGATCTTAAACAATAGCATTGGCAGCACTGGCAATCCTAG
rJMSF019G22- CACACCAAACCAAAAACTACAGATCTTAAACAATAGCATTGGCAGCACTGGCAATCCTAG
JMFN013M07+ CACACCAAACCAAAAACTACAGATCTTAAACAATAGCATTGGCAGCACTGGCAATCCTAG
rJMSF013N13- CACACCAAACCAAAAACTACAGATCTTAAACAATAGCATTGGCAGCACTGGCAATCCTAG
JMSF019G22+ CCAAACCAAAAACTACAGATCTTAAACAATAGCATTGGCAGCACTGGCAATCNTAG
JMFF049M03+ CACACCAAACCAAAANCTACAGATCTTAAACAATAGCATTGGCAGCACTGGCAATCCTAG
JMFF048I12+ CTGGCAATCCTAG
rJMSF004I15- CACACCAAACCAAAAACTACAGATCTTAAACAATAGCATTGGCAGCACTGGCAATCCTAG
rJMSF007M04- CACNCCANANCAANAACTACAGATCTTAGACAATAGCATTGGCANCACTGGCANTCCTAG
rJMFF005I10- CACACCAAACCAAAAACTACAGATCTTAAACAATAGCATTGGCAGCACTGGCAATCCTAG
rJMSF025I22- CACACCAAACCAAAAACTACAGATCTTAAACAATAGCATTGGCAGCACTGGCAATCCTAG
JMFF005I10+ AG
JMSF025I22+ CACACCAAACCAAAAACTACAGATCTTAAACAATAGCATTGGCAGCACTGGCAATCCTAG
____________________________________________________________
consensus CACACCAAACCAAAAACTACAGATCTTAAACAATAGCATTGGCAGCACTGGCAATCCTAG
. : . : . : . : . : . :
rJMFF048I12- GCCAAAGATCAGCACATTCTTTTCCA
JMFF016B16+ GCCAAAGATCAGCACATTCTTTTCCAATAGGACCAGTTATAGCAGATCCTTTCATTTCAC
rJMSF041P12- GCCAAAGATCAGCACATTCTTTTCCAATAGGACCAGTTATAGCAGATCCTTTCATTTCAC
JMFN012J13+ GCCAAAGATCAGCACATTCTTTTCCAATAGGACCAGTTATAGCAGATCCTTTCATTTCAC
JMFF025C11+ GCCAAAGATCAGCACATTCTTTTCCAATAGGACCAGTTATAGCAGATCCTTTCATTTCAC
rJMFF015J03- GCCAAAGATCAGCACATTCTTTTCCAATAGGACCAGTTATAGCAGATCCTTTAATTTCAC
rJMFF021D03- GCCAAAGATCANCACATTCTTTTCCAATAGGACCAGTTATAGCAGATCCTTTAATTTCAC
JMFF015J03+ GCCAAAGATCAGCACATTCTTTTCCAATAGGACCAGTTATAGCAGATCCTTTAATTTCAC
JMFN037K06+ GCCAAAGATCAGCACATTCTTTTCCAATAGGACCAGTTATAGCAGATCCTTTCATTTCAC
JMFN043J16+ GCCAAAGATCAGCACATTCTTTTCCAATAGGACCAGTTATAGCAGATCCTTTCATTTCAC
rJMFF016B16- GCCAAAGATCAGCACATTCTTTTCCAATAGGACCAGTTATAGCAGATCCTTTCATTTCAC
JMFN044H24+ GCCAAAGATCAGCACATTCTTTTCCAATAGGACCAGTTATAGCAGATCCTTTCATTTCAC
JMFN015I12+ GCCAAAGATCAGCACATTCTTTTCCAATAGGACCAGTTATAGCAGATCCTTTCATTTCAC
JMFN020M03+ GCCAAAGATCAGCACATTCTTTTCCAATAGGACCAGTTATAGCAGATCCTTTCATTTCAC
rJMFF049M03- GCCAAAGATCAGCACATTCTTTTCCAATAGGACCAGTTATAGCAGATCCTTTCATTTCAC
JMSF041P12+ GCCAAAGATCAGCACATTCTTTTCCAATAGGACCAGTTATAGCAGATCCTTTCATTTCAC
rJMFF025C11- GCCAAAGATCAGCACATTCTTTTCCAATAGGACCAGTTATAGCAGATCCTTTCATTTCAC
rJMSF019G22- GCCAAAGATCAGCACATTCTTTTCCAATAGGACCAGTTATAGCAGATCCTTTCATTTCAC
JMFN013M07+ GCCAAAGATCAGCACATTCTTTTCCAATAGGACCAGTTATAGCAGATCCTTTCATTTCAC
rJMSF013N13- GCCAAAGATCAGCACATTCTTTTCCAATAGGACCAGTTATAGCAGATCCTTTCATTTCAC
JMSF019G22+ GCCAAAGATCAGCACATTCTTTTCCAATAGGACCAGTTATAGCAGATCCTTTCATTTCAC
JMFF049M03+ GCCAAAGATCAGCACATTCTTTTCCAATAGGACCAGTTATAGCAGATCCTTTCATTTCAC
JMFF048I12+ GCCAAAGATCAGCACATTCTTTTCCAATAGGACCAGTANTAGCAGATCCTTTCATTTCAC
rJMSF004I15- GCCAAAGATCAGCACATTCTTTTCCAATAGGACCAGTTATAGCAGATCCTTTCATTTCAC
rJMSF007M04- GCCAAAGATCANCACATTCTTTNCCAA
rJMFF005I10- GCCAAAGATCAGCACATTCTTTTCCAATAGGACCAGTTATAGCAGATCCTTTCATTTCAC
rJMSF025I22- GCCAAAGATCAGCACATTCTTTTCCAATAGGACCAGTTATAGCAGATCCTTTCATTTCAC
JMSF004I15+ TTCAC
JMFF005I10+ GCCAAAGATCAGCACATTCTTTTCCAATAGGACCAGTTATAGCAGATCCTTTCATTTCAC
JMSF025I22+ GCCAAAGATCAGCACATTCTTTTCCAATAGGACCAGTTATAGCAGATCCTTTCATTTCAC
____________________________________________________________
consensus GCCAAAGATCAGCACATTCTTTTCCAATAGGACCAGTTATAGCAGATCCTTTCATTTCAC
. : . : . : . : . : . :
JMFF016B16+ CCTTGGGATTCACAATCACACCAGCATTATCCTCAAAATACATGAAGACGCCATCCTTTC
rJMSF041P12- CCTTGGGATTCACAATCACACCAGCATTATCCTCAAAATACATGAAGACGCCATCCTTTC
JMFN012J13+ CCTTGGGATTCACAATCACACCAGCATTATCCTCAAAATACATGAAGACGCCATCCTTTC
JMFF025C11+ CCTTGGGATTCACAATCACACCAGCATTATCCTCAAAATACATGAAGACGCCATCCTTTC
rJMFF015J03- CCTTGGGATTCACAATCACACCAGCATTATCCTCAAAATACATGAAGACGCCATCCTTTC
rJMFF021D03- CCTTGGGATTCACAATCACACCANCATTATCCTCANAATACATGAAGACGCCATCCTTTC
JMFF015J03+ CCTTGGGATTCACAATCACACCAGCATTATCCTCAAAATACATGAAGACGCCATCCTTTC
JMFN037K06+ CCTTGGGATTCACAATCACACCAGCATTATCCTCAAAATACATGAAGACGCCATCCTTTC
JMFN043J16+ CCTTGGGATTCACAATCACACCAGCATTATCCTCAAAATACATGAAGACGCCATCCTTTC
rJMFF016B16- CCTTGGGATTCACAATCACACCAGCATTATCCTCAAAATACATGAAGACGCCATCCTTTC
JMFN044H24+ CCTTGGGATTCACAATCACACCAGCATTATCCTCAAAATACATGAAGACGCCATCCTTTC
JMFN015I12+ CCTTGGGATTCACAATCACACCAGCATTATCCTCAAAATACATGAAGACGCCATCCTTTC
JMFN020M03+ CCTTGGGATTCACAATCACACCAGCATTATCCTCAAAATACATGAAGACGCCATCCTTTC
rJMFF049M03- CCTTGGGATTCACAATCACACCAGCATTATCCTCAAAATACATG
JMSF041P12+ CCTTGGGATTCACAATCACACCAGCATTATCCTCAAAATACATGAAGACGCCATCCTTTC
rJMFF025C11- CCTTGGGATTCACAATCACACCAGCATTATCCTCAAAATACATGAAGACGCCATCCTTTC
rJMSF019G22- CCTTGGGATTCACAATCACACCAGCATTATCCTCAAAATACATGAAGACGCCATCCTTTC
JMFN013M07+ CCTTGGGATTCACAATCACACCAGCATTATCCTCAAAATACATGAAGACGCCATCCTTTC
rJMSF013N13- CCTTGGGATTCACAATCACACCAGCATTATCCTCAAAATACATGAAGACGCCATCCTTTC
JMSF019G22+ CCTTGGGATTCACAATCACACCAGCATTATCCTCAAAATACATGAAGACGCCATCCTTTC
JMFF049M03+ CCTTGGGATTCACAATCACACCAGCATTATCCTCAAAATACATGAAGACGCCATCCTTTC
JMFF048I12+ CCTTGGGATTCACAATCACACCAGCATTATCCTCAAAATACATGAAGACGCCATCCTTTC
rJMSF004I15- CCTTGGGATTCACAATCACACCAGCATTATCCTCAAAATACATGAAGACGCCATCCTTTC
rJMFF005I10- CCTTGGGATTCACAATCACACCAGCATTATCCTCAAAATACATGAAGACGCCATCCTTTC
rJMSF025I22- CCTTGGGATTCACAATCACACCAGCATTATCCTCAAAATACATGAAGACGCCATCCTTTC
JMSF004I15+ CCTTGGGATTCACAATCACACCAGCATTATCCTCAAAATACATGAAGACGCCATCCTTTC
JMSF005M04+ GATTCACAATCACACCAGCATTATCCTCAAAATACATGAAGACGCCATCCTTTC
JMFF005I10+ CCTTGGGATTCACAATCACACCAGCATTATCCTCAAAATACATGAAGACGCCATCCTTTC
JMSF025I22+ CCTTGGGATTCACAATCACACCAGCATTATCCTCAAAATACATGAAGACGCCATCCTTTC
____________________________________________________________
consensus CCTTGGGATTCACAATCACACCAGCATTATCCTCAAAATACATGAAGACGCCATCCTTTC
. : . : . : . : . : . :
JMFF016B16+ GGCGCCACGGCTTGCGCTGGCGGACAATGACGGCGGGCATGACCTTCTTCCTGAGATCGG
rJMSF041P12- GGCGCCACGGCTTGCGCTGGCGGACAATGACGGCGGGCATGACCTTCTTCCTGAGATCGG
JMFN012J13+ GGCGCCACGGCTTGCGCTGGCGGACAATGACGGCGGGCATGACCTTCTTCCTGAGATCGG
JMFF025C11+ GGCGCCACGGCTTGCGCTGGCGGACAATGACGGCGGGCATGACCTTCTTCCTGAGATCGG
rJMFF015J03- GGCGCCACGGCTTGCGCTGGCGGACAATGACGGCGGGCATGACCTTCTTCCTGAGATCGG
rJMFF021D03- GGCGCCACNGCTTGCGCTGGCGGACAATGACGGCGGGCATGACCTTCTTCCTGAGATCGG
JMFF015J03+ GGCGCCACGGCTTGCGCTGGCGGACAATGACGGCGGGCATGACCTTCTTCCTGAGATCGG
JMFN037K06+ GGCGCCACGGCTTGCGCTGGCGGACAATGACGGCGGGCATGACCTTCTTCCTGAGATCGG
JMFN043J16+ GGCGCCACGGCTTGCGCTGGCGGACAATGACGGCGGGCATGACCTTCTTCCTGAGATCGG
rJMFF016B16- GGCGCCACGGCTTGCGCTGGCGGACAATGACGGCGGGCATGACCTTCTTCCTGAGATCGG
JMFN044H24+ GGCGCCACGGCTTGCGCTGGCGGACAATGACGGCGGGCATGACCTTCTTCCTGAGATCGG
JMFN015I12+ GGCGCCACGGCTTGCGCTGGCGGACAATGACGGCGGGCATGACCTTCTTCCTGAGATCGG
JMFN020M03+ GGCGCCACGGCTTGCGCTGGCGGACAATGACGGCGGGCATGACCTTCTTCCTGAGATCGG
JMSF041P12+ GGCGCCACGGCTTGCGCTGGCGGACAATGACGGCGGGCATGACCTTCTTCCTGAGATCGG
rJMFF025C11- GGCGCCACGGCTTGCGCTGGCGGACAATGACGGCGGGCATGACCTTCTTCCTGAGATCGG
rJMSF019G22- GGCGCCACGGCTTGCGCTGGCGGACAATGACGGCGGGCATGACCTTCTTCCTGAGATCGG
JMFN013M07+ GGCGCCACGGCTTGCGCTGGCGGACAATGACGGCGGGCATGACCTTCTTCCTGAGATCGG
rJMSF013N13- GGCGCCACGGCTTGCGCTGGCGGACAATGACGGCGGGCATGACCTTCTTCCTGAGATCGG
JMSF019G22+ GGCGCCACGGCTTGCGCTGGCGGACAATGACGGCGGGCATGACCTTCTTCCTGAGATCGG
JMFF049M03+ GGCGCCACGGCTTGCGCTGGCGGACAATGACGGCGGGCATGACCTTCTTCCTGAGATCGG
JMFF048I12+ GGCGCCACGGCTTGCGCTGGCGGACAATGACGGCGGGCATGACCTTCTTCCTGAGATCGG
rJMSF004I15- GGCGCCACGGCTTGCGCTGGCGGACAATGACGGCGGGCATGACCTTCTTCCTGAGATCGG
rJMFF005I10- GGCGCCACGGCTTGCGCTGGCGGACAATGACGGCGGGCATGACCTTCTTCCTGAGATCGG
rJMSF025I22- GGCGCCACGGCTTGCGCTGGCGGACAATGACGGCGGGCATGACCTTCTTCCTGAGATCGG
JMSF004I15+ GGCGCCACGGCTTGCGCTGGCGGACAATGACGGCGGGCATGACCTTCTTCCTGAGATCGG
JMSF005M04+ GGCGCCACGGCTTGCGCTGGCGGACAATGACGGCGGGCATGACCTTCTTCCTGAGATCGG
JMFF005I10+ GGCGCCACGGCTTGCGCTGGCGGACAATGACGGCGGGCATGACCTTCTTCCTGAGATCGG
JMSF025I22+ GGCGCCACGGCTTGCGCTGGCGGACAATGACGGCGGGCATGACCTTCTTCCTGAGATCGG
____________________________________________________________
consensus GGCGCCACGGCTTGCGCTGGCGGACAATGACGGCGGGCATGACCTTCTTCCTGAGATCGG
. : . : . : . : . : . :
JMFF016B16+ GCTTACCCTTCTTCACGGTGGCCATGACCATGTCGCCAACGCAAGCAGAAGGCAACCTAT
rJMSF041P12- GCTTACCCTTCTTCACGGTGGCCATGACCATGTCGCCAACGCAAGCAGAAGGCAACCTAT
JMFN012J13+ GCTTACCCTTCTTCACGGTGGCCATGACCATGTCGCCAACGCAAGCAGAAGGCAACCTAT
JMFF025C11+ GCTTACCCTTCTTCACGGTGGCCATGACCATGTCGCCAACGCAAGCAGAAGGCAACCTAT
rJMFF015J03- GCTTACCCTTCTTCACGGTGGCCATGACCATGTCGCCAACGCAAGCAGAAGGCAACCTAT
rJMFF021D03- GCTTACCCTTCTTCACGGTGGCCATGACCATGTCGCCAACGCAAGCAGAAGGCAACCTAT
JMFF015J03+ GCTTACCCTTCTTCACGGTGGCCATGACCATGTCGCCAACGCAAGCAGAAGGCAACCTAT
JMFN037K06+ GCTTACCCTTCTTCACGGTGGCCATGACCATGTCGCCAACGCAAGCAGAAGGCAACCTAT
JMFN043J16+ GCTTACCCTTCTTCACGGTGGCCATGACCATGTCGCCAACGCAAGCAGAAGGCAACCTAT
rJMFF016B16- GCTTACCCTTCTTCACGGTGGCCATGACCATGTCGCCAACGCAAGCAGAAGGCAACCTAT
JMFN044H24+ GCTTACCCTTCTTCACGGTGGCCATGACCATGTCGCCAACGCAAGCAGAAGGCAACCTAT
JMFN015I12+ GCTTACCCTTCTTCACGGTGGCCATGACCATGTCGCCAACGCAAGCAGAAGGCAACCTAT
JMFN020M03+ GCTTACCCTTCTTCACGGTGGCCATGACCATGTCGCCAACGCAAGCAGAAGGCAACCTAT
JMSF041P12+ GCTTACCCTTCTTCACGGTGGCCATGACCATGTCGCCAACGCAAGCAGAAGGCAACCTAT
rJMFF025C11- GCTTACCCTTCTTCACGGTGGCCATGACCATGTCGCCAACGCAAGCAGAAGGCAACCTAT
rJMSF019G22- GCTTACCCTTCTTCACGGTGGCCATGACCATGTCGCCAACGCAAGCAGAAGGCAACCTAT
JMFN013M07+ GCTTACCCTTCTTCACGGTGGCCATGACCATGTCGCCAACGCAAGCAGAAGGCAACCTAT
rJMSF013N13- GCTTACCCTTCTTCACGGTGGCCATGACCATGTCGCCAACGCAAGCAGAAGGCAACCTAT
JMSF019G22+ GCTTACCCTTCTTCACGGTGGCCATGACCATGTCGCCAACGCAAGCAGAAGGCAACCTAT
JMFF049M03+ GCTTACCCTTCTTCACGGTGGCCATGACCATGTCGCCAACGCAAGCAGAAGGCAACCTAT
JMFF048I12+ GCTTACCCTTCTTCACGGTGGCCATGACCATGTCGCCAACGCAAGCAGAAGGCAACCTAT
rJMSF004I15- GCTTACCCTTCTTCACGGTGGCCATGACCATGTCGCCNACGCAAGCAGANGGCAACCTAT
rJMFF005I10- GCTTACCCTTCTTCACGGTGGCCATGACCATGTCGCCAACGCAAGCAGAAGGCAACCTAT
rJMSF025I22- GCTTACCCTTCTTCACGGTGGCCATGACCATGTCGCCAACGCAAGCAGAAGGCAACCTAT
JMSF004I15+ GCTTACCCTTCTTCACGGTGGCCATGACCATGTCGCCAACGCAAGCAGAAGGCAACCTAT
JMSF005M04+ GCTTACCCTTCTTCACGGTGGCCATGACCATGTCGCCAACGCAAGCAGAAGGCAACCTAT
JMFF005I10+ GCTTACCCTTCTTCACGGTGGCCATGACCATGTCGCCAACGCAAGCAGAAGGCAACCTAT
JMSF013N13+ ATGTCGCCAACGCAAGCAGAAGGCAACCTAT
JMSF025I22+ GCTTACCCTTCTTCACGGTGGCCATGACCATGTCGCCAACGCAAGCAGAAGGCAACCTAT
____________________________________________________________
consensus GCTTACCCTTCTTCACGGTGGCCATGACCATGTCGCCAACGCAAGCAGAAGGCAACCTAT
. : . : . : . : . : . :
JMFF016B16+ TGAGGCGCCCCTTGATGCCTTTTACCGAAAT-GATGTAGAGGTTCTTCGCTCCAGTATT-
rJMSF041P12- TGAGGCGCCCCTTGATGCCTTTTACCGAAAT-GATGTAGAGGTTCTTCGCTCCAGTATT-
JMFN012J13+ TGAGGCGCCCCTTGATGCCTTTTACCGAAAT-GATGTAGAGGTTCTTCGCTCCAGTATT-
JMFF025C11+ TGAGGCGCCCCTTGATGCCTTTTACCGAAAT-GATGTAGAGGTTCTTCGCTCCAGTATT-
rJMFF015J03- TGAGGCGCCCCTTGATGCCTTTTACCGAAAT-GATGTAGAGGTTCTTCGCTCCAGTATT-
rJMFF021D03- TGAGGCGCCCCTTGATGCCTTTTACCGAAAT-GATGTAGAGGTTCTTCGCTCCAGTATT-
JMFF015J03+ TGAGGCGCCCCTTGATGCCTTTTACCGAAAT-GATGTAGAGGTTCTTCGCTCCAGTATT-
JMFN037K06+ TGAGGCGCCCCTTGATGCCTTTTACCGAAAT-GATGTAGAGGTTCTTCGCTCCAGTATT-
JMFN043J16+ TGAGGCGCCCCTTGATGCCTTTTACCGAAAT-GATGTAGAGGTTCTTCGCTCCAGTATT-
rJMFF016B16- TGAGGCGCCCCTTGATGCCTTTTACCGAAATGGATGTAGAGGTTCTTCGCTCCAGTATTG
JMFN044H24+ TGAGGCGCCCCTTGATGCCTTTTACCGAAAT-GATGTAGAGGTTCTTCGCTCCAGTATT-
JMFN015I12+ TGAGGCGCCCCTTGATGCCTTTTACCGAAAT-GATGTAGAGGTTCTTCGCTCCAGTATT-
JMFN020M03+ TGAGGCGCCCCTTGATGCCTTTTACCGAAAT-GATGTAGAGGTTCTTCGCTCCAGTATT-
JMSF041P12+ TGAGGCGCCCCTTGATGCCTTTTACCGAAAT-GATGTAGAGGTTCTTCGCTCCAGTATT-
rJMFF025C11- TGAGGCGCCCCTTGATGCCTTTTACCGAAATGGATGTAGAGGTTCTTCGCTCCAGTATT-
rJMSF019G22- TGAGGCGCCCCTTGATGCCTTTTACCGAAAT-GATGTAGAGGTTCTTCGCTCCAGTATT-
JMFN013M07+ TGAGGCGCCCCTTGATGCCTTTTACCGAAAT-GATGTAGAGGTTCTTCGCTCCAGTATT-
rJMSF013N13- TGAGGCGCCCCTTGATGCCTTTTACCGAAAT-GATGTAGAGGTTCTTCGCTCCAGTATT-
JMSF019G22+ TGAGGCGCCCCTTGATGCCTTTTACCGAAAT-GATGTAGAGGTTCTTCGCTCCAGTATT-
JMFF049M03+ TGAGGCGCCCCTTGATGCCTTTTACCGAAAT-GATGTAGAGGTTCTTCGCTCCAGTATT-
JMFF048I12+ TGAGGCGCCCCTTGATGCCTTTTACCGAAAT-GATGTAGAGGTTCTTCGCTCCAGTATT-
rJMSF004I15- TGAGGCGCCCCTTGATGCCTTTTACCGAAAT-GATGTANAGGTTCTTCGCTCCAGTATT-
rJMFF005I10- TGAGGCGCCCCTTGATGCCTTTTACCGAAAT-GATGTAGAGGTTCTTCGCTCCAGTATT-
rJMSF025I22- TGAGGCGCCCCTTGATGCCTTTTACCGAAAT-GATGTAGAGGTTCTTCGCTCCAGTATT-
JMSF004I15+ TGAGGCGCCCCTTGATGCCTTTTACCGAAAT-GATGTAGAGGTTCTTCGCTCCAGTATT-
JMSF005M04+ TGAGGCGCCCCTTGATGCCTTTTACCGAAAT-GATGTAGAGGTTCTTCGCTCCAGTATT-
JMFF005I10+ TGAGGCGCCCCTTGATGCCTTTTACCGAAAT-GATGTAGAGGTTCTTCGCTCCAGTATT-
JMSF013N13+ TGAGGCGCCCCTTGATGCCTTTTACCGAAAT-GATGTAGAGGTTCTTCGCTCCAGTATT-
JMSF025I22+ TGAGGCGCCCCTTGATGCCTTTTACCGAAAT-GATGTAGAGGTTCTTCGCTCCAGTATT-
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consensus TGAGGCGCCCCTTGATGCCTTTTACCGAAAT-GATGTAGAGGTTCTTCGCTCCAGTATT-
. : . : . : . : . : . :
JMFF016B16+ GTCGGCGCAGTTCACCGTGGCGGCAACCGGCAGACCCAGCGACATCCGGAACTTGTTCCC
rJMSF041P12- GTCGGCGCAGTTCACCGTGGCGGCAACCGGCAGACCCAGCGACATCCGGAACTTGTTCCC
JMFN012J13+ GTCGGCGCAGTTCACCGTGGCGGCAACCGGCAGACCCAGCGACATCCGGAACTTGTTCCC
JMFF025C11+ GTCGGCGCAGTTCACCGTGGCGGCAACCGGCAGACCCAGCGACATCCGGAACTTGTTCCC
rJMFF015J03- GTCGGCGCAGTTCACCGTGGCGGCAACCGGCAGACCCAGCGACATCCGGAACTTGTTCCC
rJMFF021D03- GTCGGCGCAGTTCACCGTGGCGGCAACCGGCAGACCCAGCGACATCCGGAACTTGTTCCC
JMFF015J03+ GTCGGCGCAGTTCACCGTGGCGGCAACCGGCAGACCCAGCGACATCCGGAACTTGTTCCC
JMFN037K06+ GTCGGCGCAGTTCACCGTGGCGGCAACCGGCAGACCCAGCGACATCCGGAACTTGTTCCC
JMFN043J16+ GTCGGCGCAGTTCACCGTGGCGGCAACCGGCAGACCCAGCGACATCCGGAACTTGTTCCC
rJMFF016B16- GTCGGCGCAGTTCACCGTGGCGGCAACCGGCAGACCCAGCGACATCCGGAACTTGTTCCC
JMFN044H24+ GTCGGCGCAGTTCACCGTGGCGGCAACCGGCAGACCCAGCGACATCCGGAACTTGTTCCC
JMFN015I12+ GTCGGCGCAGTTCACCGTGGCGGCAACCGGCAGACCCAGCGACATCCGGAACTTGTTCCC
JMFN020M03+ GTCGGCGCAGTTCACCGTGGCGGCAACCGGCAGACCCAGCGACATCCGGAACTTGTTCCC
JMSF041P12+ GTCGGCGCAGTTCACCGTGGCGGCAACCGGCAGACCCAGCGACATCCGGAACTTGTTCCC
rJMFF025C11- GTCGGCGCAGTTCACCGTGGCGGCAACCGGCAGACCCAGCGACATCCGGAACTTGTTCCC
rJMSF019G22- GTCGGCGCAGTTCACCGTGGCGGCAACCGGCAGACCCAGCGACATCCGGAACTTGTTCCC
JMFN013M07+ GTCGGCGCAGTTCACCGTGGCGGCAACCGGCAGACCCAGCGACATCCGGAACTTGTTCCC
rJMSF013N13- GTCGGCGCAGTTCACCGTGGCGGCAACCGGCAGACCCAGCGACATCCGGAACTTGTTCCC
JMSF019G22+ GTCGGCGCAGTTCACCGTGGCGGCAACCGGCAGACCCAGCGACATCCGGAACTTGTTCCC
JMFF049M03+ GTCGGCGCAGTTCACCGTGGCGGCAACCGGCAGACCCAGCGACATCCGGAACTTGTTCCC
JMFF048I12+ GTCGGCGCAGTTCACCGTGGCGGCAACCGGCAGACCCAGCGACATCCGGAACTTGTTCCC
rJMSF004I15- GTCGG
rJMFF005I10- GTCGGCGCAGTTCACCGTGGCGGCAACCGGCAGACCCAGCGACATCCGGAACTTGTTCCC
rJMSF025I22- GTCGGCGCAGTTCACCGTGGCGGCAACCGGCAGACCCAGCGACATCCGGAACTTGTTCCC
JMSF004I15+ GTCGGCGCAGTTCACCGTGGCGGCAACCGGCAGACCCAGCGACATCCGGAACTTGTTCCC
JMSF005M04+ GTCGGCGCAGTTCACCGTGGCGGCAACCGGCAGACCCAGCGACATCCGGAACTTGTTCCC
JMFF005I10+ GTCGGCGCAGTTCACCGTGGCGGCAACCGGCAGACCCAGCGACATCCGGAACTTGTTCCC
JMSF013N13+ GTCGGCGCAGTTCACCGTGGCGGCAACCGGCAGACCCAGCGACATCCGGAACTTGTTCCC
JMSF025I22+ GTCGGCGCAGTTCACCGTGGCGGCAACCGGCAGACCCAGCGACATCCGGAACTTGTTCCC
____________________________________________________________
consensus GTCGGCGCAGTTCACCGTGGCGGCAACCGGCAGACCCAGCGACATCCGGAACTTGTTCCC
. : . : . : . : . : . :
JMFF016B16+ GGCGGAACCTCCGCGTCCTCGCTTCGACATGGTTGATCCGCTCTCTCTCCCAGAAAC
rJMSF041P12- GGCGGAACCTCCGCGTCCTCGCTTCGACATGGTTGATCCGCTCTCTCTCCCAGAAAC
JMFN012J13+ GGCGGAACCTCCGCGTCCTCGCTTCGACATGGTTGA
JMFF025C11+ GGCGGAACCTCCGCGTCCTCGCTTCGACATGGTTGATCCGCTCTCTCTCCCAGAAAC
rJMFF015J03- GGCGGAACCTCCGCGTCCTCGCTTCGACATGGTTGATCCGCTCTCTCTCCCAGAAAC
rJMFF021D03- GGCGGAACCTCCGCGTCCTCGCTTCGACATGGTTGATCCGCTCTCTCTCCCAGAAAC
JMFF015J03+ GGCGGAACCTCCGCGTCCTCGCTTCGACATGGTTGATCCGCTCTCTCTCCCAGAAAC
JMFN037K06+ GGCGGAACCTCCGCGTCCTCGCTTCGACATGGTGA
JMFN043J16+ GGCGGAACCTCCGCGTCCTCGCTTCGACATGGTTGATCCG
rJMFF016B16- GGCGGAACCTCCGCGTCCTCGCTTCGACATGGTTGATCCGCTCTCTCTCCCAGAAAC
JMFN044H24+ GGCGGAACCTCCGCGTCCTCGCTTCGACATGGTTGATC
JMFN015I12+ GGCGGAACCTCCGCGTCCTCGCTTCGACATGGTTGATCC
JMFN020M03+ GGCGGAACCTCCGCGTCCTCGCTTCGACATGG
JMSF041P12+ GGCGGAACCTCCGCGTCCTCGCTTCGACATGGTTGATCCGCTCTCTCTCCCAGAAAC
rJMFF025C11- GGCGGAACCTCCGCGTCCTCGCTTCGACATGGTTGATCCGCTCTCTCTCCCAGAAAC
rJMSF019G22- GGCGGAACCTCCGCGTCCTCGCTTCGACATGGTTGATCCGCTCTCTCTCCCAGAAACA
JMFN013M07+ GGCGGAACCTCCGCGTCCTCGCTTCGACATGGTTGA
rJMSF013N13- GGCGGAACCTCCGCGTCCTCGCTTCGACAT
JMSF019G22+ GGCGGAACCTCCGCGTCCTCGCTTCGACATGGTTGATCCGCTCTCTCTCCCAGAAACA
JMFF049M03+ GGCGGAACCTCCGCGTCCTCGCTTCGACATGGTTGATCCGCTCTCTCTCCC
JMFF048I12+ GGCGGAACCTCCGCGTCCTCGCTTCGACATGGTTGATCCGCTCTCTCTCCC
rJMFF005I10- GGCGGAACCTCCGCGTCCTCGCTTCGACATGGTTGATCCGCTCTCTCTCCCAGAAACAG
rJMSF025I22- GGCGGAACCTCCGCGTCCTCGCTTCGACATGGTTGATCCGCTCTCTCTCCCAGAAACAG
JMSF004I15+ GGCGGAACCTCCGCGTCCTCGCTTCGACATGGTTGATCCGCTCTCTCTCCCAGAAACA
JMSF005M04+ GGCGGAACCTCCGCGTCCTCGCTTCGACATGGTTGATCCGCTCTCTCTCCCAG
JMFF005I10+ GGCGGAACCTCCGCGTCCTCGCTTCGACATGGTTGATCCGCTCTCTCTCCCAGAAACAG
JMSF013N13+ GGCGGAACCTCCGCGTCCTCGCTTCGACAT
JMSF025I22+ GGCGGAACCTCCGCGTCCTCGCTTCGACATGGTTGATCCGCTCTCTCTCCCAGAAACAGC
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consensus GGCGGAACCTCCGCGTCCTCGCTTCGACATGGTTGATCCGCTCTCTCTCCCAGAAACAGC