List of clones in pair P013872.

cloneseq.5'-sequence3'-sequence
lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF013D10Sequence583009929 (36)ref|XP_009780966.1|1e-22PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Nicotiana 643009929 (36)ref|XP_011071173.1|7e-47PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Sesam
JMFF032D21Sequence615009929 (36)ref|XP_009780966.1|2e-32PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Nicotiana 693009929 (36)ref|XP_011071173.1|4e-47PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Sesam
JMFF050I13Sequence627009929 (36)599009929 (36)ref|XP_004142959.1|4e-33PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Cucum
JMFN006L24Sequence621009929 (36)ref|XP_009780966.1|4e-47PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Nicotiana
JMFN007O07Sequence615009929 (36)ref|XP_009780966.1|4e-45PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Nicotiana
JMFN008B10Sequence627009929 (36)ref|XP_011071173.1|3e-47PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Sesam
JMFN009E11Sequence642009929 (36)ref|XP_011071173.1|3e-47PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Sesam
JMFN010I08Sequence625009929 (36)ref|XP_009780966.1|6e-52PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Nicotiana
JMFN011K09Sequence612009929 (36)ref|XP_008444395.1|3e-35PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Cucumis me
JMFN014H15Sequence614009929 (36)ref|XP_009780966.1|1e-37PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Nicotiana
JMFN015P02Sequence596009929 (36)ref|XP_009780966.1|1e-40PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Nicotiana
JMFN016G22Sequence612009929 (36)ref|XP_009780966.1|5e-40PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Nicotiana
JMFN016N11Sequence605009929 (36)ref|XP_007044927.1|1e-45Photosystem II core complex proteins psbY [Theobroma cacao] gb|EOY00759.1| Photo
JMFN017P09Sequence632009929 (36)ref|XP_009780966.1|5e-41PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Nicotiana
JMFN018I13Sequence641009929 (36)ref|XP_009780966.1|2e-50PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Nicotiana
JMFN019N23Sequence627009929 (36)ref|XP_009780966.1|5e-37PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Nicotiana
JMFN025C23Sequence626009929 (36)ref|XP_007044927.1|2e-45Photosystem II core complex proteins psbY [Theobroma cacao] gb|EOY00759.1| Photo
JMFN033L16Sequence618009929 (36)ref|XP_009780966.1|8e-37PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Nicotiana
JMFN035P06Sequence644009929 (36)ref|XP_009780966.1|2e-35PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Nicotiana
JMFN036B15Sequence594009929 (36)ref|XP_009780966.1|1e-42PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Nicotiana
JMFN036D02Sequence545009929 (36)ref|XP_011071173.1|3e-32PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Sesam
JMFN036L20Sequence532009929 (36)ref|XP_008444395.1|1e-26PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Cucumis me
JMFN038C14Sequence613009929 (36)ref|XP_009780966.1|5e-35PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Nicotiana
JMSF002N12Sequence281009929 (36)ref|XP_009780966.1|7e-04PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Nicotiana 700009929 (36)ref|XP_011071173.1|3e-47PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Sesam
JMSF019E19Sequence250009929 (36)ref|XP_009780966.1|3e-09PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Nicotiana 674009929 (36)ref|XP_011071173.1|5e-47PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Sesam
JMSF034P04Sequence697009929 (36)ref|XP_011071173.1|2e-27PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Sesam700009929 (36)ref|XP_011071173.1|7e-47PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Sesam

Contig 9929 BLAST Hits against nr-aa DB Show

Alignment

Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.

SCORE============================================Contig009929============================================1746         
 470                            ----------------------------------->JMFF050I13                                        
                                                                       <---------------------------------rJMFF050I13  
1015                                                   ------------------------->JMFF013D10                           
                                                             <-----------------------------------rJMFF013D10  
1035                                                   -------------->JMSF002N12                                      
                                                        <---------------------------------------rJMSF002N12  
1036                                                   --------------------------->JMSF034P04                         
                                                        <---------------------------------------rJMSF034P04  
1054                                                     ---------------------------------->JMFF032D21                
                                                         <---------------------------------------rJMFF032D21  
1070                                                     ------------->JMSF019E19                                     
                                                         <--------------------------------------rJMSF019E19

The following clones don't have the opposite end in this pair.

                                                          ---------------------------------->JMFN011K09-              
     <------------------------------------------rJMSF042K17*                                                          
                                                           --------------------------------->JMFN017P09-              
                                                         ----------------------------------->JMFN033L16-              
                                                           ------------------------------>JMFN036D02-                 
                                                          ------------------------------------>JMFN035P06-            
                                                            ----------------------------------->JMFN018I13-           
                                                         ---------------------------------->JMFN007O07-               
                                                       ----------------------------------->JMFN019N23-                
       <-----------------------------------------rJMSF029N07*                                                         
                                                              ---------------------------------->JMFN025C23-          
                                                               --------------------------------->JMFN016N11-          
                                                         ---------------------------------->JMFN016G22-               
       <-----------------------------------------rJMSF036N13*                                                         
                                                          ------------------------------------>JMFN009E11-            
                                                           ------------------------------>JMFN036L20-                 
                                                             ----------------------------------->JMFN008B10-          
                                                          --------------------------------->JMFN015P02-               
                                                       ---------------------------------->JMFN038C14-                 
                                                           ----------------------------------->JMFN010I08-            
                                                          ----------------------------------->JMFN006L24-             
     <-----------------------------------------rJMSF015D21*                                                           
                                                          --------------------------------->JMFN036B15-               
                                                        ---------------------------------->JMFN014H15-