clone | seq. | 5'-sequence | 3'-sequence | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
JMFF038E05 | Sequence | 558 | 008959 (10) | emb|CDO97632.1| | 1e-106 | unnamed protein product [Coffea canephora] | 741 | 008959 (10) | gb|KJB46955.1| | 2e-133 | hypothetical protein B456_008G046500 [Gossypium raimondii] |
JMFN035B08 | Sequence | 618 | 008959 (10) | gb|KJB46955.1| | 1e-126 | hypothetical protein B456_008G046500 [Gossypium raimondii] | |||||
JMSF003M19 | Sequence | 515 | 008959 (10) | gb|KDP42463.1| | 2e-69 | hypothetical protein JCGZ_00260 [Jatropha curcas] | |||||
JMSF013G12 | Sequence | 506 | 008959 (10) | ref|XP_004133726.1| | 7e-100 | PREDICTED: ras-related protein RABD1-like isoform 2 [Cucumis sativus] gb|KGN562 | 720 | 008959 (10) | gb|KJB46955.1| | 5e-136 | hypothetical protein B456_008G046500 [Gossypium raimondii] |
JMSF023E10 | Sequence | 677 | 008959 (10) | gb|KJB46955.1| | 9e-131 | hypothetical protein B456_008G046500 [Gossypium raimondii] | 753 | 008959 (10) | gb|KJB46955.1| | 6e-136 | hypothetical protein B456_008G046500 [Gossypium raimondii] |
JMSF029H08 | Sequence | 677 | 008959 (10) | gb|KJB46955.1| | 7e-136 | hypothetical protein B456_008G046500 [Gossypium raimondii] | 737 | 008959 (10) | gb|KDP42463.1| | 3e-129 | hypothetical protein JCGZ_00260 [Jatropha curcas] |
Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.
SCORE============================================Contig008959============================================ 751 47 ---------------------------------------------------------->JMSF013G12 <-----------------------------------------------------------------------------------------------rJMSF013G12 74 --------------------------------------------------------------------------------->JMSF029H08 <--------------------------------------------------------------------------------------------rJMSF029H08 185 ------------------------------------------------------------------------->JMFF038E05 <----------------------------------------------------------------------rJMFF038E05 206 ---------------------------------------------------------------------------->JMSF023E10 <-------------------------------------------------------------------------rJMSF023E10
The following clones don't have the opposite end in this pair.
<-----------------------------------------rJMSF003M19- -------------------------------------------------------------------------------->JMFN035B08-