| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF038E05 | Sequence | 558 | 008959 (10) | emb|CDO97632.1| | 1e-106 | unnamed protein product [Coffea canephora] | 741 | 008959 (10) | gb|KJB46955.1| | 2e-133 | hypothetical protein B456_008G046500 [Gossypium raimondii] |
| JMFN035B08 | Sequence | 618 | 008959 (10) | gb|KJB46955.1| | 1e-126 | hypothetical protein B456_008G046500 [Gossypium raimondii] | |||||
| JMSF003M19 | Sequence | 515 | 008959 (10) | gb|KDP42463.1| | 2e-69 | hypothetical protein JCGZ_00260 [Jatropha curcas] | |||||
| JMSF013G12 | Sequence | 506 | 008959 (10) | ref|XP_004133726.1| | 7e-100 | PREDICTED: ras-related protein RABD1-like isoform 2 [Cucumis sativus] gb|KGN562 | 720 | 008959 (10) | gb|KJB46955.1| | 5e-136 | hypothetical protein B456_008G046500 [Gossypium raimondii] |
| JMSF023E10 | Sequence | 677 | 008959 (10) | gb|KJB46955.1| | 9e-131 | hypothetical protein B456_008G046500 [Gossypium raimondii] | 753 | 008959 (10) | gb|KJB46955.1| | 6e-136 | hypothetical protein B456_008G046500 [Gossypium raimondii] |
| JMSF029H08 | Sequence | 677 | 008959 (10) | gb|KJB46955.1| | 7e-136 | hypothetical protein B456_008G046500 [Gossypium raimondii] | 737 | 008959 (10) | gb|KDP42463.1| | 3e-129 | hypothetical protein JCGZ_00260 [Jatropha curcas] |
This contig is upended
. : . : . : . : . : . :
rJMSF013G12- AACATGTTGTCACATGGTAAACATAATCTGG
rJMSF029H08- TGG
____________________________________________________________
consensus AACATGTTGTCACATGGTAAACATAATCTGG
. : . : . : . : . : . :
JMSF029H08+ TAT
rJMSF013G12- GAAATACATATTTGATTACTTTGCATTCAACATTTGTAAAGCAGGATACAACTACACTAT
rJMSF029H08- GAAATACATATTTGATTACTTTGCATTCAACATTTGTAAAGCAGGATACAACTACACTAT
____________________________________________________________
consensus GAAATACATATTTGATTACTTTGCATTCAACATTTGTAAAGCAGGATACAACTACACTAT
. : . : . : . : . : . :
JMSF029H08+ AAGTAGTTAGCTACAACAATTGCTCTTCTGTTGGATNGGCTGTCCCTTGATTTGAACAGT
JMSF023E10+ GGATNGGCTGTCCCTTGATTTGAACAGT
rJMSF013G12- AAGTAGTTAGCTACAACAATTGCTCTTCTGTTGGATTGGCTGTCCCTTGATTTGAACAGT
rJMSF029H08- AAGTAGTTAGCTACAACAATTGCTCTTCTGTTGGATTGGCTGTCCCTTGATTTGAACAGT
JMFN035B08+ TTTGAACAGT
____________________________________________________________
consensus AAGTAGTTAGCTACAACAATTGCTCTTCTGTTGGATTGGCTGTCCCTTGATTTGAACAGT
. : . : . : . : . : . :
JMSF029H08+ ACTAGCTGACTTGTTTCCAGCAGGTTGTGTGCCCATTTTTTTCTTAATTTCACCAGCCAT
JMSF023E10+ ACTAGCTGACTTGTTTCCAGCAGGTTGTGTGCCCATTTTTTTCTTAATTTCACCAGCCAT
rJMSF003M19- TTCCAGCAGGTTGTGTGCCCATTTTTTTCTTAATTTCACCAGCCAT
rJMSF023E10- CTTGTTTCCAGCAGGTTGTGTGCCCATTTTTTTCTTAATTTCACCAGCCAT
rJMFF038E05- CTTGTTTCCAGCAGGTTGTGTGCCCATTTTTTTCTTAATTTCACCAGCCAT
rJMSF013G12- ACTAGCTGACTTGTTTCCAGCAGGTTGTGTGCCCATTTTTTTCTTAATTTCACCAGCCAT
rJMSF029H08- ACTAGCTGACTTGTTTCCAGCAGGTTGTGTGCCCATTTTTTTCTTAATTTCACCAGCCAT
JMFF038E05+ CCAGCAGGTTGTGTGCCCATTTTTTTCTTAATTTCACCAGCCAT
JMFN035B08+ ACTAGCTGACTTGTTTCCAGCAGGTTGTGTGCCCATTTTNTTCTTAATTTCACCAGCCAT
____________________________________________________________
consensus ACTAGCTGACTTGTTTCCAGCAGGTTGTGTGCCCATTTTTTTCTTAATTTCACCAGCCAT
. : . : . : . : . : . :
JMSF029H08+ GGTTAAGAAAGCCTGCTCCAC-GTTGATGGAATCTTTTGCACTAGTCTCCAGGAAAGGTA
JMSF023E10+ GGTTAAGAAAGCCTGCTCCAC-GTTGATGGAATCTTTTGCACTAGTCTCCAGGAAAGGTA
JMSF013G12+ CAGGAAAGGTA
rJMSF003M19- GGTTAANAAAGCCTGCTCCAC-GTTGATGGAATCTTTTGCACTAATCTCCAGGAAAGGTA
rJMSF023E10- GGTTAAGAAAGCCTGCTCCAC-GTTGATGGAATCTTTTGCACTAGTCTCCAGGAAAGGTA
rJMFF038E05- GGTTAAGAAAGCCTGCTCCAC-GTTGATGGAATCTTTTGCACTAGTCTCCAGGAAAGGTA
rJMSF013G12- GGTTAAGAAAGCCTGCTCCAC-GTTGATGGAATCTTTTGCACTAGTCTCCAGGAAAGGTA
rJMSF029H08- GGTTAAGAAAGCCTGCTCCAC-GTTGATGGAATCTTTTGCACTAGTCTCCAGGAAAGGTA
JMFF038E05+ GGTTAAGAAAGCCTGCTCCACGGTTGATGGAATCTTTTGCACTAGTCTCCAGGAAAGGTA
JMFN035B08+ GGTTAAGAAAGCCTGCTCCAC-GTTGATGGAATCTTTTGCACTAGTCTCCAGGAAAGGTA
____________________________________________________________
consensus GGTTAAGAAAGCCTGCTCCAC-GTTGATGGAATCTTTTGCACTAGTCTCCAGGAAAGGTA
. : . : . : . : . : . :
JMSF029H08+ TACTGAGCTCATTTGCAAATGCCTTTGCCGTTTCTGTGTCCACAACCTTGTTCTCTGCCA
JMSF023E10+ TACCGAGCTCATTTGCAAATGCCTTTGCCGTTTCTGTGTCCACAACCTTGTTCTCTGCCA
JMSF013G12+ TACCGAGCTCATTNGCAAATGCCTTTGCCGTTTCTGTGTCCACAACCTTGTTCTCTGCCA
rJMSF003M19- TACCGAGCTCATTTGCAAATGCCTTTGCCGTTTCTGTGTCCACAACCTTGTTCTCTGCCA
rJMSF023E10- TACCGAGCTCATTTGCAAATGCCTTTGCCGTTTCTGTGTCCACAACCTTGTTCTCTGCCA
rJMFF038E05- TACCGAGCTCATTTGCAAATGCCTTTGCCGTTTCTGTGTCCACAACCTTGTTCTCTGCCA
rJMSF013G12- TACCGAGCTCATTTGCAAATGCCTTTGCCGTTTCTGTGTCCACAACCTTGTTCTCTGCCA
rJMSF029H08- TACTGAGCTCATTTGCAAATGCCTTTGCCGTTTCTGTGTCCACAACCTTGTTCTCTGCCA
JMFF038E05+ TACCGAGCTCATTTGCAAATGCCTTTGCCGTTTCTGTGTCCACAACCTTGTTCTCTGCCA
JMFN035B08+ TACCGAGCTCATTTGCAAATGCCTTTGCCGTTTCTGTGTCCACAACCTTGTTCTCTGCCA
____________________________________________________________
consensus TACCGAGCTCATTTGCAAATGCCTTTGCCGTTTCTGTGTCCACAACCTTGTTCTCTGCCA
. : . : . : . : . : . :
JMSF029H08+ AATCACACTTGTTTCCAACTAAAAGCTTGCAAACGCTATCATTTGCATATCTGTCGATTT
JMSF023E10+ AATCACACTTGTTTCCAACTAAAAGCTTGCAAACGCTATCATTTGCATATCTGTCGATTT
JMSF013G12+ AATCACACTTGTTTCCAACTAAAAGCTTGCAAACGCTATCATTTGCATATCTGTCGATTT
rJMSF003M19- AATCACACTTGTTTCCAACTAAAAGCTTGCNAACGCTATCATTTGCATATCTGTCGATTT
rJMSF023E10- AATCACACTTGTTTCCAACTAAAAGCTTGCAAACGCTATCATTTGCATATCTGTCGATTT
rJMFF038E05- AATCACACTTGTTTCCAACTAAAAGCTTGCAAACGCTATCATTTGCATATCTGTCGATTT
rJMSF013G12- AATCACACTTGTTTCCAACTAAAAGCTTGCAAACGCTATCATTTGCATATCTGTCGATTT
rJMSF029H08- AATCACACTTGTTTCCAACTAAAAGCTTGCAAACGCTATCATTTGCATATCTGTCGATTT
JMFF038E05+ AATCACACTTGTTTCCAACTAAAAGCTTGCAAACGCTATCATTTGCATATCTGTCGATTT
JMFN035B08+ AATCACACTTGTTTCCAACTAAAAGCTTGCAAACGCTATCATTTGCATATCTGTCGATTT
____________________________________________________________
consensus AATCACACTTGTTTCCAACTAAAAGCTTGCAAACGCTATCATTTGCATATCTGTCGATTT
. : . : . : . : . : . :
JMSF029H08+ CACTCAGCCATTGCTTGACATTGTTGAAGCTCTCCATTTCGGTAACATCATAGACAATAA
JMSF023E10+ CACTCAGCCATTGCTTGACATTGTTGAAGCTCTCCATTTCGGTAACATCATAGACAATAA
JMSF013G12+ CACTCAGCCATTGCTTGACATTGTTGAAGCTCTCCATTTCGGTAACATCATAGACAATAA
rJMSF003M19- CACTCAGNCATTGCNTGACATTGTTGAAGCTCTCCATTTCGGTNACATCATANACAATAA
rJMSF023E10- CACTCAGCCATTGCTTGACATTGTTGAAGCTCTCCATTTCGGTAACATCATAGACAATAA
rJMFF038E05- CACTCAGCCATTGCTTGACATTGTTGAAGCTCTCCATTTCGGTAACATCATAGACAATAA
rJMSF013G12- CACTCAGCCATTGCTTGACATTGTTGAAGCTCTCCATTTCGGTAACATCATAGACAATAA
rJMSF029H08- CACTCAGCCATTGCTTGACATTGTTGAAGCTCTCCATTTCGGTAACATCATAGACAATAA
JMFF038E05+ CACTCAGCCATTGCTTGACATTGTTGAAGCTCTCCATTTCGGTAACATCATAGACAATAA
JMFN035B08+ CACTCAGCCATTGCTTGACATTGTTGAAGCTCTCCATTTCGGTAACATCATAGACAATAA
____________________________________________________________
consensus CACTCAGCCATTGCTTGACATTGTTGAAGCTCTCCATTTCGGTAACATCATAGACAATAA
. : . : . : . : . : . :
JMSF029H08+ TGATTCCATGTGCACCACGATAGTAACTGCTTGTAATAGTCCGGAAACGCTCCTGGCCAG
JMSF023E10+ TGATTCCATGTGCACCACGATAGTAACTGCTTGTAATAGTCCGGAAACGCTCCTGGCCAG
JMSF013G12+ TGATTCCATGTGCACCACGATAGTAACTGCTTGTAATAGTCCGGAAACGCTCCTGGCCAG
rJMSF003M19- TGATTCCATGTGCACCACGATAGNAACTGC
rJMSF023E10- TGATTCCATGTGCACCACGATAGTAACTGCTTGTAATAGTCCGGAAACGCTCCTGGCCAG
rJMFF038E05- TGATTCCATGTGCACCACGATAGTAACTGCTTGTAATAGTCCGGAAACGCTCCTGGCCAG
rJMSF013G12- TGATTCCATGTGCACCACGATAGTAACTGCTTGTAATAGTCCGGAAACGCTCCTGGCCAG
rJMSF029H08- TGATTCCATGTGCACCACGATAGTAACTGCTTGTAATAGTCCGGAAACGCTCCTGGCCAG
JMFF038E05+ TGATTCCATGTGCACCACGATAGTAACTGCTTGTAATAGTCCGGAAACGCTCCTGGCCAG
JMFN035B08+ TGATTCCATGTGCACCACGATAGTAACTGCTTGTAATAGTCCGGAAACGCTCCTGGCCAG
____________________________________________________________
consensus TGATTCCATGTGCACCACGATAGTAACTGCTTGTAATAGTCCGGAAACGCTCCTGGCCAG
. : . : . : . : . : . :
JMSF029H08+ CAGTATCCCAAATTTGCAGCTTGATAGTCTTCCCATCCAGCTCCACTGTCCTAATTTTGA
JMSF023E10+ CAGTATCCCAAATTTGCAGCTTGATAGTCTTCCCATCCAGCTCCACTGTCCTAATTTTGA
JMSF013G12+ CAGTATCCCAAATTTGCAGCTTGATAGTCTTCCCATCCAGCTCCACTGTCCTAATTTTGA
rJMSF023E10- CAGTATCCCAAATTTGCAGCTTGATAGTCTTCCCATCCAGCTCCACTGTCCTAATTTTGA
rJMFF038E05- CAGTATCCCAAATTTGCAGCTTGATAGTCTTCCCATCCAGCTCCACTGTCCTAATTTTGA
rJMSF013G12- CAGTATCCCAAATTTGCAGCTTGATAGTCTTCCCATCCAGCTCCACTGTCCTAATTTTGA
rJMSF029H08- CAGTATCCCAAATTTGCAGCTTGATAGTCTTCCCATCCAGCTCCACTGTCCTAATTTTGA
JMFF038E05+ CAGTATCCCAAATTTGCAGCTTGATAGTCTTCCCATCCAGCTCCACTGTCCTAATTTTGA
JMFN035B08+ CAGTATCCCAAATTTGCAGCTTGATAGTCTTCCCATCCAGCTCCACTGTCCTAATTTTGA
____________________________________________________________
consensus CAGTATCCCAAATTTGCAGCTTGATAGTCTTCCCATCCAGCTCCACTGTCCTAATTTTGA
. : . : . : . : . : . :
JMSF029H08+ AGTCAACTCCTATGGTGCTAATGTAGCTGTCAATGTACGAATCATCAGCGAATCTGAGAA
JMSF023E10+ AGTCAACTCCTATGGTGCTAATGTAGCTGTCAATGTACGAATCATCAGCGAATCTGAGAA
JMSF013G12+ AGTCAACTCCTATGGTGCTAATGTAGCTGTCAATGTACGAATCATCAGCGAATCTGAGAA
rJMSF023E10- AGTCAACTCCTATGGTGCTAATGTAGCTGTCAATGTACGAATCATCAGCGAATCTGAGAA
rJMFF038E05- AGTCAACTCCTATGGTGCTAATGTAGCTGTCAATGTACGAATCATCAGCGAATCTGAGAA
rJMSF013G12- AGTCAACTCCTATGGTGCTAATGTAGCTGTCAATGTACGAATCATCAGCGAATCTGAGAA
rJMSF029H08- AGTCAACTCCTATGGTGCTAATGTAGCTGTCAATGTACGAATCATCAGCGAATCTGAGAA
JMFF038E05+ AGTCAACTCCTATGGTGCTAATGTAGCTGTCAATGTACGAATCATCAGCGAATCTGAGAA
JMFN035B08+ AGTCAACTCCTATGGTGCTAATGTAGCTGTCAATGTACGAATCATCAGCGAATCTGAGAA
____________________________________________________________
consensus AGTCAACTCCTATGGTGCTAATGTAGCTGTCAATGTACGAATCATCAGCGAATCTGAGAA
. : . : . : . : . : . :
JMSF029H08+ GCAGGCAGGACTTGCCGACGGAAGAGTCTCCGATTAGCAACAACTTG-AACAAATAATCG
JMSF023E10+ GCAGGCAGGACTTGCCGACGGAAGAGTCTCCGATTAGCAACAACTTG-AACAAATAATCG
JMSF013G12+ GCAGGCAGGACTTGCCGACGGAAGAGTCTCCGATTAGCAACAACTTG-AACAAATAATCG
rJMSF023E10- GCAGGCAGGACTTGCCGACGGAAGAGTCTCCGATTAGCAACAACTTG-AACAAATAATCG
rJMFF038E05- GCAGGCAGGACTTGCCGACGGAAGAGTCTCCGATTAGCAACAACTTG-AACAAATAATCG
rJMSF013G12- GCAGGCAGGACTTGCCGACGGAAGAGTCTCCGATTAGCAACAACTTG-AACAAATAATCG
rJMSF029H08- GCAGGCAGGACTTGCCGACGGAAGAGTCTCCGATTAGCAACAACTTGAAACAAATAATCG
JMFF038E05+ GCAGGCAGGACTTGCCGACGGAAGAGTCTCCGATTAGCAACAACTTG-AACAAATAATCG
JMFN035B08+ GCAGGCAGGACTTGCCGACGGAAGAGTCTCCGATTAGCAACAACTTG-AACAAATAATCG
____________________________________________________________
consensus GCAGGCAGGACTTGCCGACGGAAGAGTCTCCGATTAGCAACAACTTG-AACAAATAATCG
. : . : . : . : . : . :
JMSF029H08+ TATTCGGTACTCAT
JMSF023E10+ TATTCGGTACTCAT
JMSF013G12+ TATTCGGTACTCAT
rJMSF023E10- TATTCGGTACTCATTTTTAGTTGT
rJMFF038E05- TA
rJMSF013G12- TATTCGGTACTCATTTTTAGTTGTCGGCAAA
rJMSF029H08- TATTCGGTACTCATTTTTAGTTGTCGGCAAAGA
JMFF038E05+ TATTCGGTACTCATTTTTAGTTGTCGGCAAAGAAT
JMFN035B08+ TATTCGGTACTCATTTTTAGTTGTCGGCAAAGAATATGAGAAGCTTGCTTGTCAGTTTGC
____________________________________________________________
consensus TATTCGGTACTCATTTTTAGTTGTCGGCAAAGAATATGAGAAGCTTGCTTGTCAGTTTGC