| clone | seq. | 5'-sequence | 3'-sequence | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
| JMFF025E01 | Sequence | 515 | 004630 (18) | gb|AGU28444.1| | 1e-70 | ribosomal protein 1, partial [Sinapis alba] | |||||
| JMFF042I15 | Sequence | 401 | 004630 (18) | ref|XP_010912010.1| | 5e-48 | PREDICTED: 60S ribosomal protein L3-like isoform X2 [Elaeis guineensis] | 401 | 004630 (18) | ref|XP_010912010.1| | 5e-48 | PREDICTED: 60S ribosomal protein L3-like isoform X2 [Elaeis guineensis] |
| JMFF048F13 | Sequence | 393 | 004630 (18) | gb|KJB16202.1| | 5e-42 | hypothetical protein B456_002G217200 [Gossypium raimondii] | 282 | 004630 (18) | ref|XP_006349325.1| | 3e-17 | PREDICTED: 60S ribosomal protein L3-2-like isoform X1 [Solanum tuberosum] ref|X |
| JMSF009K08 | Sequence | 342 | 004630 (18) | emb|CDY26351.1| | 8e-44 | BnaA03g60270D [Brassica napus] | 767 | 004630 (18) | ref|XP_009598742.1| | 1e-165 | PREDICTED: 60S ribosomal protein L3-2 [Nicotiana tomentosiformis] |
| JMSF016I22 | Sequence | 240 | 004630 (18) | emb|CDY26351.1| | 2e-31 | BnaA03g60270D [Brassica napus] | 757 | 004630 (18) | emb|CDO97512.1| | 2e-148 | unnamed protein product [Coffea canephora] |
| JMSF022M09 | Sequence | 673 | 004630 (18) | ref|XP_010030177.1| | 6e-106 | PREDICTED: 60S ribosomal protein L3 [Eucalyptus grandis] ref|XP_010030178.1| PRE | 759 | 004630 (18) | emb|CDO97512.1| | 4e-147 | unnamed protein product [Coffea canephora] |
| JMSF024O06 | Sequence | 671 | 004630 (18) | ref|XP_002524302.1| | 9e-142 | 60S ribosomal protein L3, putative [Ricinus communis] gb|EEF38042.1| 60S ribosom | |||||
| JMSF041L19 | Sequence | 744 | 004630 (18) | ref|XP_010030177.1| | 5e-125 | PREDICTED: 60S ribosomal protein L3 [Eucalyptus grandis] ref|XP_010030178.1| PRE | 748 | 004630 (18) | ref|XP_010912010.1| | 6e-120 | PREDICTED: 60S ribosomal protein L3-like isoform X2 [Elaeis guineensis] |
| JMSF042J13 | Sequence | 745 | 004630 (18) | ref|XP_010030177.1| | 2e-124 | PREDICTED: 60S ribosomal protein L3 [Eucalyptus grandis] ref|XP_010030178.1| PRE | 793 | 004630 (18) | emb|CDO97512.1| | 4e-145 | unnamed protein product [Coffea canephora] |
| JMSF043I06 | Sequence | 798 | 004630 (18) | ref|XP_010030177.1| | 1e-138 | PREDICTED: 60S ribosomal protein L3 [Eucalyptus grandis] ref|XP_010030178.1| PRE | 827 | 004630 (18) | emb|CDO97512.1| | 3e-157 | unnamed protein product [Coffea canephora] |
Explanatory notes: "*" The opposite end is in another contig. "**" The opposite end is in same contig. "#" The opposite end is singlet. "-" The opposite end has no seqence.
SCORE============================================Contig004630============================================1389 4 --------------------------->JMFF048F13 <-------------------rJMFF048F13 44 ---------------->JMSF016I22 <------------------------------------------------------rJMSF016I22 46 -------------------------------------------------------->JMSF043I06 <-----------------------------------------------------------rJMSF043I06 46 ----------------------------------------------------->JMSF041L19 <----------------------------------------------------rJMSF041L19 46 ----------------------------------------------------->JMSF042J13 <------------------------------------------------------rJMSF042J13 61 ------------------------------------------------>JMSF022M09 <----------------------------------------------------rJMSF022M09 124 ------------------------>JMSF009K08 <------------------------------------------------------rJMSF009K08 986 ---------------------------->JMFF042I15 <----------------------------rJMFF042I15
The following clones don't have the opposite end in this pair.
------------------------------------>JMFF025E01- <-----------------------------------------------rJMSF024O06-