clone | seq. | 5'-sequence | 3'-sequence | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
JMFF015D03 | Sequence | 584 | 006753 (12) | ref|XP_009787096.1| | 5e-105 | PREDICTED: 60S ribosomal protein L21-1-like [Nicotiana sylvestris] | 686 | 006753 (12) | ref|XP_009787096.1| | 4e-104 | PREDICTED: 60S ribosomal protein L21-1-like [Nicotiana sylvestris] |
JMFF027D08 | Sequence | 535 | 006753 (12) | ref|XP_009787096.1| | 1e-102 | PREDICTED: 60S ribosomal protein L21-1-like [Nicotiana sylvestris] | 721 | 006753 (12) | ref|XP_009787096.1| | 4e-104 | PREDICTED: 60S ribosomal protein L21-1-like [Nicotiana sylvestris] |
JMFF036C24 | Sequence | 495 | 006753 (12) | ref|XP_009787096.1| | 3e-92 | PREDICTED: 60S ribosomal protein L21-1-like [Nicotiana sylvestris] | 683 | 006753 (12) | ref|XP_009787096.1| | 1e-104 | PREDICTED: 60S ribosomal protein L21-1-like [Nicotiana sylvestris] |
JMSF017J08 | Sequence | 270 | 006753 (12) | ref|XP_009110810.1| | 2e-42 | PREDICTED: 60S ribosomal protein L21-1-like [Brassica rapa] emb|CDY31071.1| BnaA | 653 | 006753 (12) | ref|XP_009787096.1| | 1e-104 | PREDICTED: 60S ribosomal protein L21-1-like [Nicotiana sylvestris] |
JMSF052A09 | Sequence | 262 | 006753 (12) | emb|CBI29295.3| | 5e-06 | unnamed protein product [Vitis vinifera] | 213 | 006753 (12) | ref|XP_004249294.1| | 3e-06 | PREDICTED: 60S ribosomal protein L21-1-like [Solanum lycopersicum] |
JMSF052H13 | Sequence | 632 | 006753 (12) | ref|XP_009787096.1| | 7e-105 | PREDICTED: 60S ribosomal protein L21-1-like [Nicotiana sylvestris] | 577 | 006753 (12) | ref|XP_009787096.1| | 4e-105 | PREDICTED: 60S ribosomal protein L21-1-like [Nicotiana sylvestris] |
Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.
SCORE============================================Contig006753============================================ 748 27 ---------------------------------------------------------------------->JMFF027D08 <----------------------------------------------------------------------------------------------rJMFF027D08 68 ----------------------------------------------------------------->JMFF036C24 <------------------------------------------------------------------------------------------rJMFF036C24 82 ----------------------------------------------------------------------------->JMFF015D03 <-------------------------------------------------------------------------------------------rJMFF015D03 103 ----------------------------------->JMSF017J08 <-------------------------------------------------------------------------------------rJMSF017J08 172 ---------------------------------------------------------------------------------->JMSF052H13 <----------------------------------------------------------------------------rJMSF052H13 538 ---------------------------------->JMSF052A09 <---------------------------rJMSF052A09
The following clones don't have the opposite end in this pair.