Contig 006753:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015D03Sequence584006753 (12)ref|XP_009787096.1|5e-105PREDICTED: 60S ribosomal protein L21-1-like [Nicotiana sylvestris]686006753 (12)ref|XP_009787096.1|4e-104PREDICTED: 60S ribosomal protein L21-1-like [Nicotiana sylvestris]
JMFF027D08Sequence535006753 (12)ref|XP_009787096.1|1e-102PREDICTED: 60S ribosomal protein L21-1-like [Nicotiana sylvestris]721006753 (12)ref|XP_009787096.1|4e-104PREDICTED: 60S ribosomal protein L21-1-like [Nicotiana sylvestris]
JMFF036C24Sequence495006753 (12)ref|XP_009787096.1|3e-92PREDICTED: 60S ribosomal protein L21-1-like [Nicotiana sylvestris]683006753 (12)ref|XP_009787096.1|1e-104PREDICTED: 60S ribosomal protein L21-1-like [Nicotiana sylvestris]
JMSF017J08Sequence270006753 (12)ref|XP_009110810.1|2e-42PREDICTED: 60S ribosomal protein L21-1-like [Brassica rapa] emb|CDY31071.1| BnaA653006753 (12)ref|XP_009787096.1|1e-104PREDICTED: 60S ribosomal protein L21-1-like [Nicotiana sylvestris]
JMSF052A09Sequence262006753 (12)emb|CBI29295.3|5e-06unnamed protein product [Vitis vinifera]213006753 (12)ref|XP_004249294.1|3e-06PREDICTED: 60S ribosomal protein L21-1-like [Solanum lycopersicum]
JMSF052H13Sequence632006753 (12)ref|XP_009787096.1|7e-105PREDICTED: 60S ribosomal protein L21-1-like [Nicotiana sylvestris]577006753 (12)ref|XP_009787096.1|4e-105PREDICTED: 60S ribosomal protein L21-1-like [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFF027D08-                                                             TCGACCCACA
rJMFF015D03+                                          AATTCGTCGAGAACCGCTTGACCCCACA
rJMSF017J08+                                                               ACCCACA
JMSF052H13-                                                             TCGACCCACA
JMFF015D03-                                                               GACCCACA
rJMSF052H13+                                                            TCGACCCACA
JMFF036C24-                                                             TCGACCCACA
JMSF017J08-                                                                ACCCACA
rJMFF036C24+                                                            TCGACCCACA
rJMFF027D08+                                                                    CA
                      ____________________________________________________________
consensus                                             AATTCGTCGAGAACCGCTTCGACCCACA
 
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JMFF027D08-           CTTTACCCAGTCGGAGAAGAAGAAGAAGAGAAAGCAAAATGCCTGCCGGACACGGATTAA
rJMFF015D03+          CTTTACCCAGTCGGAGAAGAAGAAGAAGAGAAAGCAAAATGCCTGCCGGACACGGATTAA
rJMSF017J08+          CTTTACCCAGTCGGAGAAGAAGAAGAAGAGAAAGCAAAATGCCTGCCGGACACGGATTAA
JMSF052H13-           CTTTACCCAGTCGGAGAAGAAGAAGAAGAGAAAGCAAAATGCCTGCCGGACACGGATTAA
JMFF015D03-           CTTTACCCAGTCGGAGAAGAAGAAGAAGAGAAAGCAAAATGCCTGCCGGACACGGATTAA
rJMSF052H13+          CTTTACCCAGTCGGAGAAGAAGAAGAAGAGAAAGCAAAATGCCTGCCGGACACGGATTAA
JMFF036C24-           CTTTACCCAGTCGGAGAAGAAGAAGAAGAGAAAGCAAAATGCCTGCCGGACACGGATTAA
JMSF017J08-           CTTTACCCAGTCGGAGAAGAAGAAGAAGAGAAAGCAAAATGCCTGCCGGACACGGATTAA
rJMFF036C24+          CTTTACCCAGTCGGAGAAGAAGAAGAAGAGAAAGCAAAATGCCTGCCGGACACGGATTAA
rJMFF027D08+          CTTTACCCAGTCGGAGAAGAAGAAGAAGAGAAAGCAAAATGCCTGCCGGACACGGATTAA
                      ____________________________________________________________
consensus             CTTTACCCAGTCGGAGAAGAAGAAGAAGAGAAAGCAAAATGCCTGCCGGACACGGATTAA
 
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JMFF027D08-           GGGCGAGGACGAGAGATCTCTTCTCTCGCGGGTTCAGGAAGCGCGGGACCATTCCGCTAT
rJMFF015D03+          GGGCGAGGACGAGAGATCTCTTCTCTCGCGAGTTCAGGAAGCGCGGGACCATTCCGCTAT
rJMSF017J08+          GGGCGAGGACGAGAGATCTCTTCTCTCGCGGGTTCAGGAAGCGCGGGACCATTCCGCTAT
JMSF052H13-           GGGCGAGGACGAGAGATCTCTTCTCTCGCGGGTTCAGGAAGCGCGGGACCATTCCGCTAT
JMFF015D03-           GGGCGAGGACGAGAGATCTCTTCTCTCGCGAGTTCAGGAAGCGCGGGACCATTCCGCTAT
rJMSF052H13+          GGGCGAGGACGAGAGATCTCTTCTCTCGCGGGTTCAGGAAGCGCGGGACCATTCCGCTAT
JMFF036C24-           GGGCGAGGACGAGAGATCTCTTCTCTCGCGGGTTCAGGAAGCGCGGGACCATTCCGCTAT
JMSF017J08-           GGGCGAGGACGAGAGATCTCTTCTCTCGCGGGTTCAGGAAGCGCGGGACCATTCCGCTAT
rJMFF036C24+          GGGCGAGGACGAGAGATCTCTTCTCTCGCGGGTTCAGGAAGCGCGGGACCATTCCGCTAT
rJMFF027D08+          GGGCGAGGACGAGAGATCTCTTCTCTCGCGGGTTCAGGAAGCGCGGGACCATTCCGCTAT
                      ____________________________________________________________
consensus             GGGCGAGGACGAGAGATCTCTTCTCTCGCGGGTTCAGGAAGCGCGGGACCATTCCGCTAT
 
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JMFF027D08-           CCACCTACTTGCGTATCTTCCACATCGGCGACTACGTTGACGTAAAGGTGAACGGTGCCA
rJMFF015D03+          CCACCTACTTGCGTATCTTCCACATCGGCGACTACGTTGACGTAAAGGTGAACGGTGCCA
rJMSF017J08+          CCACCTACTTGCGTATCTTCCACATCGGCGACTACGTTGACGTAAAGGTGAACGGTGCCA
JMSF052H13-           CCACCTACTTGCGTATCTTCCACATCGGCGACTACGTTGACGTAAAGGTGAACGGTGCCA
JMFF015D03-           CCACCTACTTGCGTATCTTCCACATCGGCGACTACGTTGACGTAAAGGTGAACGGTGCCA
rJMSF052H13+          CCACCTACTTGCGTATCTTCCACATCGGCGACTACGTTGACGTAAAGGTGAACGGTGCCA
JMFF036C24-           CCACCTACTTGCGTATCTTCCACATCGGCGACTACGTTGACGTAAAGGTGAACGGTGCCA
JMSF017J08-           CCACCTACTTGCGTATCTTCCACATCGGCGACTACGTTGACGTAAAGGTGAACGGTGCCA
rJMFF036C24+          CCACCTACTTGCGTATCTTCCACATCGGCGACTACGTTGACGTAAAGGTGAACGGTGCCA
rJMFF027D08+          CCACCTACTTGCGTATCTTCCACATCGGCGACTACGTTGACGTAAAGGTGAACGGTGCCA
                      ____________________________________________________________
consensus             CCACCTACTTGCGTATCTTCCACATCGGCGACTACGTTGACGTAAAGGTGAACGGTGCCA
 
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JMFF027D08-           TCCACAAGGGCATGCCTCACAAGTTCTATCACGGTCGCACCGGCCGCGTCTGGAACGTCA
rJMFF015D03+          TCCACAAGGGCATGCCTCACAAGTTCTATCACGGTCGCACCGGCCGCGTCTGGAACGTCA
rJMSF017J08+          TCCACAAGGGCATGCCTCACAAGTTCTATCACGGTCGCACCGGCCGCGTCTGGAACGTCA
JMSF052H13-           TCCACAAGGGCATGCCTCACAAGTTCTATCACGGTCGCACCGGCCGCGTCTGGAACGTCA
JMFF015D03-           TCCACAAGGGCATGCCTCACAAGTTCTATCACGGTCGCACCGGCCGCGTCTGGAACGTCA
rJMSF052H13+          TCCACAAGGGCATGCCTCACAAGTTCTATCACGGTCGCACCGGCCGCGTCTGGAACGTCA
JMFF036C24-           TCCACAAGGGCATGCCTCACAAGTTCTATCACGGTCGCACCGGCCGCGTCTGGAACGTCA
JMSF017J08-           TCCACAAGGGCATGCCTCACAAGTTCTATCACGGTCGCACCGGCCGCGTCTGGAACGTCA
rJMFF036C24+          TCCACAAGGGCATGCCTCACAAGTTCTATCACGGTCGCACCGGCCGCGTCTGGAACGTCA
rJMFF027D08+          TCCACAAGGGCATGCCTCACAAGTTCTATCACGGTCGCACCGGCCGCGTCTGGAACGTCA
                      ____________________________________________________________
consensus             TCCACAAGGGCATGCCTCACAAGTTCTATCACGGTCGCACCGGCCGCGTCTGGAACGTCA
 
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JMFF027D08-           CTAAGCGCGCCATTGGTGTCGAAGTCAACAAGCAGGTTGGCAACAGGATCATCAGGAAGA
rJMFF015D03+          CTAAGCGCGCCATTGGTGTCGAAGTCAACAAGCAGGTTGGCAACAGGATCATCAGGAAGA
rJMSF017J08+          CTAAGCGCGCCATTGGTGTCGAAGTCAACAAGCAGGTTGGCAACAGGATCATCAGGAAGA
JMSF052H13-           CTAAGCGCGCCATTGGTGTCGAAGTCAACAAGCAGGTTGGCAACAGGATCATCAGGAAGA
JMFF015D03-           CTAAGCGCGCCATTGGTGTCGAAGTCAACAAGCAGGTTGGCAACAGGATCATCAGGAAGA
rJMSF052H13+          CTAAGCGCGCCATTGGTGTCGAAGTCAACAAGCAGGTTGGCAACAGGATCATCAGGAAGA
JMFF036C24-           CTAAGCGCGCCATTGGTGTCGAAGTCAACAAGCAGGTTGGCAACAGGATCATCAGGAAGA
JMSF017J08-           CTAAGCGCGCCATTGGTGTCG                                       
rJMFF036C24+          CTAAGCGCGCCATTGGTGTCGAAGTCAACAAGCAGGTTGGCAACAGGATCATCAGGAAGA
rJMFF027D08+          CTAAGCGCGCCATTGGTGTCGAAGTCAACAAGCAGGTTGGCAACAGGATCATCAGGAAGA
                      ____________________________________________________________
consensus             CTAAGCGCGCCATTGGTGTCGAAGTCAACAAGCAGGTTGGCAACAGGATCATCAGGAAGA
 
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JMFF027D08-           GAATCCATGTTCGTATTGAGCATGTTCAACTTTCAAGGTGCACTGAAGAGTTTAAGGAGA
rJMFF015D03+          GAATCCATGTTCGTATTGAGCATGTTCAACTTTCAAGGTGCACTGAAGAGTTTAAGGAGA
rJMSF017J08+          GAATCCATGTTCGTATTGAGCATGTTCAACTTTCAAGGTGCACTGAAGAGTTTAAGGAGA
JMSF052H13-           GAATCCATGTTCGTATTGAGCATGTTCAACTTTCAAGGTGCACTGAAGAGTTTAAGGAGA
JMFF015D03-           GAATCCATGTTCGTATTGAGCATGTTCAACTTTCAAGGTGCACTGAAGAGTTTAAGGAGA
rJMSF052H13+          GAATCCATGTTCGTATTGAGCATGTTCAACTTTCAAGGTGCACTGAAGAGTTTAAGGAGA
JMFF036C24-           GAATCCATGTTCGTATTGAGCATGTTCAACTTTCAAGGTGCACTGAAGAGTTTAAGGAGA
rJMFF036C24+          GAATCCATGTTCGTATTGAGCATGTTCAACTTTCAAGGTGCACTGAAGAGTTTAAGGAGA
rJMFF027D08+          GAATCCATGTTCGTATTGAGCATGTTCAACTTTCAAGGTGCACTGAAGAGTTTAAGGAGA
                      ____________________________________________________________
consensus             GAATCCATGTTCGTATTGAGCATGTTCAACTTTCAAGGTGCACTGAAGAGTTTAAGGAGA
 
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JMFF027D08-           GGGTAAAGAAAAATGATCAGCTCAAGGCTGAAGCAAAAGCCAAAGGTGTGGTGATTAGTA
rJMFF015D03+          GGGTAAAGAAAAATGATCAGCTCAAGGCTGAAGCAAAAGCCAAAGGTGTGGTGATTAGTA
rJMSF017J08+          GGGTAAAGAAAAATGATCAGCTCAAGGCTGAAGCAAAAGCCAAAGGTGTGGTGATTAGTA
JMSF052H13-           GGGTAAAGAAAAATGATCAGCTCAAGGCTGAAGCAAAAGCCAAAGGTGTGGTGATTAGTA
JMFF015D03-           GGGTAAAGAAAAATGATCAGCTCAAGGCTGAAGCAAAAGCCAAAGGTGTGGTGATTAGTA
rJMSF052H13+          GGGTAAAGAAAAATGATCAGCTCAAGGCTGAAGCAAAAGCCAAAGGTGTGGTGATTAGTA
JMFF036C24-           GGGTAAAGAAAAATGATCAGCTCAAGGCTGAAGCAAAAGCCAAAGGTGTGGTGATTAGTA
rJMFF036C24+          GGGTAAAGAAAAATGATCAGCTCAAGGCTGAAGCAAAAGCCAAAGGTGTGGTGATTAGTA
rJMFF027D08+          GGGTAAAGAAAAATGATCAGCTCAAGGCTGAAGCAAAAGCCAAAGGTGTGGTGATTAGTA
                      ____________________________________________________________
consensus             GGGTAAAGAAAAATGATCAGCTCAAGGCTGAAGCAAAAGCCAAAGGTGTGGTGATTAGTA
 
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JMFF027D08-           CTAAGAGGCAGCCGAAAGGACCCAAACCTGGATTTATGGTGGAAGGTGCCACTCTAGAAA
rJMFF015D03+          CTAAGAGGCAGCCGAAAGGACCCAAACCTGGATTTATGGTGGAAGGTGCCACTCTAGAAA
rJMSF017J08+          CTAAGAGGCAGCCGAAAGGACCCAAACCTGGATTTATGGTGGAAGGTGCCACTCTAGAAA
JMSF052H13-           CTAAGAGGCAGCCGAAAGGACCCAAACCTGGATTTATGGTGGAAGGTGCCACTCTAGAAA
JMFF015D03-           CTAAGAGGCAGCCGAAAGGACCCAAACCTGGATTTATGGTGGAAGGTGCCACTCTAGAAA
rJMSF052H13+          CTAAGAGGCAGCCGAAAGGACCCAAACCTGGATTTATGGTGGAAGGTGCCACTCTAGAAA
JMFF036C24-           CTAAGAGGCAGCCGAAAGGACCCAAACCTGGATTTATGGTGGAAGGTGCCACTCTAGAAA
rJMFF036C24+          CTAAGAGGCAGCCGAAAGGACCCAAACCTGGATTTATGGTGGAAGGTGCCACTCTAGAAA
rJMSF052A09+                                                  GGAAGGTGCCACTCTAGAAA
rJMFF027D08+          CTAAGAGGCAGCCGAAAGGACCCAAACCTGGATTTATGGTGGAAGGTGCCACTCTAGAAA
JMSF052A09-                                                   GGAAGGTGCCACTCTAGAAA
                      ____________________________________________________________
consensus             CTAAGAGGCAGCCGAAAGGACCCAAACCTGGATTTATGGTGGAAGGTGCCACTCTAGAAA
 
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JMFF027D08-           CCGTAACACCCATCCCATATGATGTGGTCAATGATCTCAAGG                  
rJMFF015D03+          CCGTAACACCCATCCCATATGATGTGGTCAATGATCTCAAGGGAGGATACTAAATTCCTT
rJMSF017J08+          CCGTAACACCCATCCCATATGATGTGGTCAATGATCTCAAGGGAGGATACTAAATTCCTT
JMSF052H13-           CCGTAACACCCATCCCATATGATGTGGTCAATGATCTCAAGGGAGGATACTAAATTCCTT
JMFF015D03-           CCGTAACACCCATCCCATATGATGTGGTCAATGATCTCAAGGGAGGATACTAAATTCCTT
rJMSF052H13+          CCGTAACACCCATCCCATATGATGTGGTCAATGATCTCAAGGGAGGATACTAAATTCCTT
JMFF036C24-           CC                                                          
rJMFF036C24+          CCGTAACACCCATCCCATATGATGTGGTCAATGATCTCAAGGGAGGATACTAAATTCCTT
rJMSF052A09+          CCGTAACACCCATCCCATATGATGTGGTCAATGATCTCAAGGGAGGATACTAAATTCCTT
rJMFF027D08+          CCGTAACACCCATCCCATATGATGTGGTCAATGATCTCAAGGGAGGATACTAAATTCCTT
JMSF052A09-           CCGTAACACCCATCCCATATGATGTGGTCAATGATCTCAAGGGAGGATACTAAATTCCTT
                      ____________________________________________________________
consensus             CCGTAACACCCATCCCATATGATGTGGTCAATGATCTCAAGGGAGGATACTAAATTCCTT
 
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rJMFF015D03+          GTTTATTCGAGATGTCTTTATCGTTTTATGAACAGTTAATCAGAGTTCTAATTAATGTTG
rJMSF017J08+          GTTTATTCGAGATGTCTTTATCGTTTTATGAACAGTTAATCAGAGTTCTAATTAATGTTG
JMSF052H13-           GTTTATTCGAGATGTCTTTATCGTTTTATGAACAGTTAATCAGAGTTCTAATTAATGTTG
JMFF015D03-           GTTTATTCGAGATGTCTTTATCGTTTTATGAAC                           
rJMSF052H13+          GTTTATTCGAGATGTCTTTATCGTTT                                  
rJMFF036C24+          GTTTATTCGAGATGTCTTTATCGTTTTATGAACAGTTAATCAGAGTTCTAATTAATGTTG
rJMSF052A09+          GTTTATTCGAGATGTCTTTATCGTTTTATGAACAGTTAATCAGAGTTCTAATTAATGTTG
rJMFF027D08+          GTTTATTCGAGATGTCTTTATCGTTTTATGAACAGTTAATCAGAGTTCTAATTAATGTTG
JMSF052A09-           GTTTATTCGAGATGTCTTTATCGTTTTATGAACAGTTAATCAGAGTTCTAATTAATGTTG
                      ____________________________________________________________
consensus             GTTTATTCGAGATGTCTTTATCGTTTTATGAACAGTTAATCAGAGTTCTAATTAATGTTG
 
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rJMFF015D03+          TTTTCATGTCCACACACTCGGTTTTGTTTGAATTTTTTTGTGTTGGCCTTTTATATTT  
rJMSF017J08+          TTTTCATGTCCACACACTCGGTTTTGTTTGAATTTTTT                      
JMSF052H13-           TTTTCATGTCCA                                                
rJMFF036C24+          TTTTCATGTCCACACACTCGGTTTTGTTTGAATTTTTTTGTGTTGGCCTTTTATATTTGT
rJMSF052A09+          TTTTCATGTCCACACACTCGGTTTTGTTTGAATTTTTTTGTGTTGGCCTTTTATATTTGT
rJMFF027D08+          TTTTCATGTCCACACACTCGGTTTTGTTTGAATTTTTTTGTGTTGGCCTTTTATATTTGT
JMSF052A09-           TTTTCATGTCCACACACTCGGTTTTGTTTGAATTTTTTTGTGTTGGCCTTTTATATTTGT
                      ____________________________________________________________
consensus             TTTTCATGTCCACACACTCGGTTTTGTTTGAATTTTTTTGTGTTGGCCTTTTATATTTGT
 
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rJMFF036C24+          AGTTGAACAT                                                  
rJMSF052A09+          AGTTGAACAT                                                  
rJMFF027D08+          AGTTGAACATGTTTGCTGAATTTATGTGCCTTTGTGTCAAATTATAGATCA         
JMSF052A09-           AGTTGAACATGTTTGCTGAATTTATGTGCCTTTGTGTCAAATTATAGATCAAAAAAAAAA
                      ____________________________________________________________
consensus             AGTTGAACATGTTTGCTGAATTTATGTGCCTTTGTGTCAAATTATAGATCAAAAAAAAAA