clone | seq. | 5'-sequence | 3'-sequence | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
JMFF018C07 | Sequence | 637 | 002332 (10) | ref|XP_006349236.1| | 1e-107 | PREDICTED: stem-specific protein TSJT1-like [Solanum tuberosum] | 745 | 002332 (10) | ref|XP_009624848.1| | 2e-92 | PREDICTED: stem-specific protein TSJT1 [Nicotiana tomentosiformis] |
JMFF025J17 | Sequence | 523 | 002332 (10) | ref|XP_008340920.1| | 9e-79 | PREDICTED: stem-specific protein TSJT1 [Malus domestica] ref|XP_008361987.1| PRE | 791 | 002332 (10) | ref|XP_009624848.1| | 3e-99 | PREDICTED: stem-specific protein TSJT1 [Nicotiana tomentosiformis] |
JMFS085D12 | Sequence | 638 | 002332 (10) | ref|XP_006349236.1| | 2e-112 | PREDICTED: stem-specific protein TSJT1-like [Solanum tuberosum] | |||||
JMFS120B04 | Sequence | 624 | 002332 (10) | ref|XP_006349236.1| | 9e-112 | PREDICTED: stem-specific protein TSJT1-like [Solanum tuberosum] | |||||
JMSF033D03 | Sequence | 695 | 002332 (10) | ref|XP_006349236.1| | 3e-121 | PREDICTED: stem-specific protein TSJT1-like [Solanum tuberosum] | 713 | 002332 (10) | ref|XP_009624848.1| | 3e-88 | PREDICTED: stem-specific protein TSJT1 [Nicotiana tomentosiformis] |
JMSF034L08 | Sequence | 674 | 002332 (10) | ref|XP_006349236.1| | 3e-127 | PREDICTED: stem-specific protein TSJT1-like [Solanum tuberosum] | 771 | 002332 (10) | ref|XP_009624848.1| | 9e-102 | PREDICTED: stem-specific protein TSJT1 [Nicotiana tomentosiformis] |
Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.
SCORE============================================Contig002332============================================1116 6 ---------------------------------------------->JMFF025J17 <----------------------------------------------------------------------rJMFF025J17 14 -------------------------------------------------------->JMFF018C07 <------------------------------------------------------------------rJMFF018C07 39 ------------------------------------------------------------->JMSF033D03 <--------------------------------------------------------------rJMSF033D03 91 ----------------------------------------------------------->JMSF034L08 <------------------------------------------------------------------rJMSF034L08
The following clones don't have the opposite end in this pair.
------------------------------------------------------->JMFS120B04- -------------------------------------------------------->JMFS085D12-