| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF018C07 | Sequence | 637 | 002332 (10) | ref|XP_006349236.1| | 1e-107 | PREDICTED: stem-specific protein TSJT1-like [Solanum tuberosum] | 745 | 002332 (10) | ref|XP_009624848.1| | 2e-92 | PREDICTED: stem-specific protein TSJT1 [Nicotiana tomentosiformis] |
| JMFF025J17 | Sequence | 523 | 002332 (10) | ref|XP_008340920.1| | 9e-79 | PREDICTED: stem-specific protein TSJT1 [Malus domestica] ref|XP_008361987.1| PRE | 791 | 002332 (10) | ref|XP_009624848.1| | 3e-99 | PREDICTED: stem-specific protein TSJT1 [Nicotiana tomentosiformis] |
| JMFS085D12 | Sequence | 638 | 002332 (10) | ref|XP_006349236.1| | 2e-112 | PREDICTED: stem-specific protein TSJT1-like [Solanum tuberosum] | |||||
| JMFS120B04 | Sequence | 624 | 002332 (10) | ref|XP_006349236.1| | 9e-112 | PREDICTED: stem-specific protein TSJT1-like [Solanum tuberosum] | |||||
| JMSF033D03 | Sequence | 695 | 002332 (10) | ref|XP_006349236.1| | 3e-121 | PREDICTED: stem-specific protein TSJT1-like [Solanum tuberosum] | 713 | 002332 (10) | ref|XP_009624848.1| | 3e-88 | PREDICTED: stem-specific protein TSJT1 [Nicotiana tomentosiformis] |
| JMSF034L08 | Sequence | 674 | 002332 (10) | ref|XP_006349236.1| | 3e-127 | PREDICTED: stem-specific protein TSJT1-like [Solanum tuberosum] | 771 | 002332 (10) | ref|XP_009624848.1| | 9e-102 | PREDICTED: stem-specific protein TSJT1 [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMFF018C07- TTGAACAAGGAAGAAACAGCTAGCTTT
rJMFF025J17- TTTATTAGATTGAACAAGGAAGAAACAGCTAGCTTT
____________________________________________________________
consensus TTTATTAGATTGAACAAGGAAGAAACAGCTAGCTTT
. : . : . : . : . : . :
rJMSF033D03- ATGGCGAAATTGAAACAAACAAACCCCAAAATCTACATTCATTCTAAAGTAAGTAAA
rJMSF034L08- ATGGCGAAATTGAAACAAACAAACCCCAAAATCTACATTCATTCTAAAGTAAGTAAA
rJMFF018C07- ACAATGGCGAAATTGAAACAAACAAACCCCAAAATCTACATTCATTCTAAAGTAAGTAAA
rJMFF025J17- ACAATGGCGAAATTGAAACAAACAAACCCCAAAATCTACATTCATTCTAAAGTAAGTAAA
____________________________________________________________
consensus ACAATGGCGAAATTGAAACAAACAAACCCCAAAATCTACATTCATTCTAAAGTAAGTAAA
. : . : . : . : . : . :
rJMSF033D03- ACAACTTAGCATAAAAGATTACTAATCCCACTCTAGGTAGAATAGTAATAAACACCTAAG
rJMSF034L08- ACAACTTAGCATAAAAGATTACTAATCCCACTCTAGGTAGAATAGTAATAAACACCTAAG
rJMFF018C07- ACAACTTAGCATAAAAGATTACTAATCCCACTCTAGGTAGAATAGTAATAAACACCTAAG
rJMFF025J17- ACAACTTAGCATAAAAGATTACTAATCCCACTCTAGGTAGAATAGTAATAAACACCTAAG
____________________________________________________________
consensus ACAACTTAGCATAAAAGATTACTAATCCCACTCTAGGTAGAATAGTAATAAACACCTAAG
. : . : . : . : . : . :
rJMSF033D03- GGAACTTTGTCATTCACTTATTTACATTATATTGCTCCCTATCCTTCCCTTGCATCCTCT
rJMSF034L08- GGAACTTTGTCATTCACTTATTTACATTATATTGCTCCCTATCCTTCCCTTGCATCCTCT
rJMFF018C07- GGAACTTTGTCATTCACTTATTTACATTATATTGCTCCCTATCCTTCCCTTGCATCCTCT
rJMFF025J17- GGAACTTTGTCATTCACTTATTTACATTATATTGCTCCCTATCCTTCCCTTGCATCCTCT
____________________________________________________________
consensus GGAACTTTGTCATTCACTTATTTACATTATATTGCTCCCTATCCTTCCCTTGCATCCTCT
. : . : . : . : . : . :
rJMSF033D03- CACTCTCTCTCTCTTCCCTTGTCACCACTGTTAAAAGAGGTTTTGGATCTATCTCTGTAA
rJMSF034L08- CACTCTCTCTCTCTTCCCTTGTCACCACTGTTAAAAGAGGTTTTGGATCTATCTCTGTAA
rJMFF018C07- CACTCTCTCTCTCTTCCCTTGTCACCACTGCTAAAAGAGGTTTTGGATCTATCTCTGTAA
rJMFF025J17- CACTCTCTCTCTCTTCCCTTGTCACCACTGTTAAAAGAGGTTTTGGATCTATCTCTGTAA
____________________________________________________________
consensus CACTCTCTCTCTCTTCCCTTGTCACCACTGTTAAAAGAGGTTTTGGATCTATCTCTGTAA
. : . : . : . : . : . :
rJMSF033D03- AGAGGGATAGATCTATTTTGTTGCTGCAAGAACTACTGGCCCTCCCTCAACCATAAACTT
rJMSF034L08- AGAGGGATAGATCTATTTTGTTGCTGCAAGAACTACTGGCCCTCCCTCAACCATAAACTT
rJMFF018C07- AGAGGGATAGATCTATTTTGTTGCTGCAAGAACTACTGGCCCTCCCTCAACCATAAACTT
rJMFF025J17- AGAGGGATAGATCTATTTTGTTGCTGCAAGAACTACTGGCCCTCCCTCAACCATAAACTT
____________________________________________________________
consensus AGAGGGATAGATCTATTTTGTTGCTGCAAGAACTACTGGCCCTCCCTCAACCATAAACTT
. : . : . : . : . : . :
rJMSF033D03- GGCACCCCAAATTTCCTCCTCTGGAGCAGGTATGGCAGTGACCTTGCTTTTAGGATTCTC
rJMSF034L08- GGCACCCCAAATTTCCTCCTCTGGAGCAGGTATGGCAGTGACCTTGCTTTTAGGATTCTC
rJMFF018C07- GGCACCCCAAATTTCCTCCTCTGGAGCAGGTATGGCAGTGACCTTGCTTTTAGGATTCTC
rJMFF025J17- GGCACCCCAAATTTCCTCCTCTGGAGCAGGTATGGCAGTGACCTTGCTTTTAGGATTCTC
JMSF034L08+ TCTC
____________________________________________________________
consensus GGCACCCCAAATTTCCTCCTCTGGAGCAGGTATGGCAGTGACCTTGCTTTTAGGATTCTC
. : . : . : . : . : . :
rJMSF033D03- ATAGGATTTCAGTTCTCCCACTGCTGTGGAGAAGAAGCACCCTTCTGGGAAGGAAGCAAG
rJMSF034L08- ATAGGATTTCAGTTCTCCCACTGCTGTGGAGAAGAAGCACCCTTCTGGGAAGGAAGCAAG
rJMFF018C07- ATAGGATTTCAGTTCTCCCACTGCTGTGGAGAAGAAGCACCCTTCTGGGAAGGAAGCAAG
rJMFF025J17- ATAGGATTTCAGTTCTCCCACTGCTGTGGAGAAGAAGCACCCTTCTGGGAAGGAAGCAAG
JMSF034L08+ ATAGGATTTCAGTTCTCCCACTGCTGTGGAGAAGAAGCACCCTTCTGGGAAGGAAGCAAG
JMFS085D12+ AGCAAG
JMSF033D03+ GTGGAGAAGAAGCACCCTTCTGGGAAGGAAGCAAG
____________________________________________________________
consensus ATAGGATTTCAGTTCTCCCACTGCTGTGGAGAAGAAGCACCCTTCTGGGAAGGAAGCAAG
. : . : . : . : . : . :
rJMSF033D03- TGACTTGCCACAAGAGCCCTTGAGCAGATCAGCATCATTAGCAAATGCTACACACCCATC
rJMSF034L08- TGACTTGCCACAAGAGCCCTTGAGCAGATCAGCATCATTAGCAAATGCTACACACCCATC
rJMFF018C07- TGACTTGCCACAAGAGCCCTTGAGCAGATCAGCATCATTAGCAAATGCTACACACCCATC
rJMFF025J17- TGACTTGCCACAAGAGCCCTTGAGCAGATCAGCATCATTAGCAAATGCTACACACCCATC
JMSF034L08+ TGACTTGCCACAAGAGCCCTTGAGCAGATCAGCATCATTAGCAAATGCTACACACCCATC
JMFF018C07+ AGCAGATCAGCATCATTAGCAAATGCTACACACCCATC
JMFS120B04+ CCACAAGAGCCCTTGAGCAGATCAGCATCATTAGCAAATGCTACACACCCATC
JMFS085D12+ TGACTGNCCACAAGAGCCCTTGAGCAGATCAGCATCATTAGCAAATGCTACACACCCATC
JMSF033D03+ TGACTTGCCACAAGAGCCCTTGAGCAGATCAGCATCATTAGCAAATGCTACACACCCATC
____________________________________________________________
consensus TGACTTGCCACAAGAGCCCTTGAGCAGATCAGCATCATTAGCAAATGCTACACACCCATC
. : . : . : . : . : . :
rJMSF033D03- AGCAGTGATTCCCCAGTACAGAGGCACCTTGCCGGTTTGATCAGTAGCCACAAACAAGGT
rJMSF034L08- AGCAGTGATTCCCCAGTACAGAGGCACCTTGCCGGTTTGATCAGTAGCCACAAACAAGGT
rJMFF018C07- AGCAGTGATTCCCCAGTACAGAGGCACCTTGCCGGTTTGATCAGTAGCCACAAACAAGGT
rJMFF025J17- AGCAGTGATTCCCCAGTACAGAGGCACCTTGCCGGTTTGATCAGTAGCCACAAACAAGGT
JMSF034L08+ AGCAGTGATTCCCCAGTACAGAGGCACCTTGCCGGTTTGATCAGTAGCCACAAACAAGGT
JMFF018C07+ AGCAGTGATTCCCCAGTACAGAGGCACCTTGCCGGTTTGATCAGTAGCCACAAACAAGGT
JMFS120B04+ AGCAGTGATTCCCCAGTACAGAGGCACCTTGCCGGTTTGATCAGTAGCCACAAACAAGGT
JMFS085D12+ AGCAGTGATTCCCCAGTACAGAGGCACCTTGCCGGTTTGATCAGTAGCCACAAACAAGGT
JMSF033D03+ AGCAGTGATTCCCCAGTACAGAGGCACCTTGCCGGTTTGATCAGTAGCCACAAACAAGGT
____________________________________________________________
consensus AGCAGTGATTCCCCAGTACAGAGGCACCTTGCCGGTTTGATCAGTAGCCACAAACAAGGT
. : . : . : . : . : . :
rJMSF033D03- GGAGGTGGACTTGTCAAACACTATGAAAGCAAAGTTGCCCTCAAGGTGACCTACAACATG
rJMSF034L08- GGAGGTGGACTTGTCAAACACTATGAAAGCAAAGTTGCCCTCAAGGTGACCTACAACATG
rJMFF018C07- GGAGGTGGACTTGTCAAACACTATGAAAGCAAAGTTGCCCTCAAGGTGACCTACAACATG
rJMFF025J17- GGAGGTGGACTTGTCAAACACTATGAAAGCAAAGTTGCCCTCAAGGTGACCTACAACATG
JMSF034L08+ GGAGGTGGACTTGTCAAACACTATGAAAGCAAAGTTGCCCTCAAGGTGACCTACAACATG
JMFF018C07+ GGAGGTGGACTTGTCAAACACTATGAAAGCAAAGTTGCCCTCAAGGTGACCTACAACATG
JMFS120B04+ GGAGGTGGACTTGTCAAACACTATGAAAGCAAAGTTGCCCTCAAGGTGACCTACAACATG
JMFS085D12+ GGAGGTGGACTTGTCAAACACTATGAAAGCAAAGTTGCCCTCAAGGTGACCTACAACATG
JMFF025J17+ CAAACACTATGAAAGCAAAGTTGCCCTCAAGGTGACCTACAACATG
JMSF033D03+ GGAGGTGGACTTGTCAAACACTATGAAAGCAAAGTTGCCCTCAAGGTGACCTACAACATG
____________________________________________________________
consensus GGAGGTGGACTTGTCAAACACTATGAAAGCAAAGTTGCCCTCAAGGTGACCTACAACATG
. : . : . : . : . : . :
rJMSF033D03- GTTTGCAGGGTAAGGTGCCCGGTCTCGAAGCGCCTTGTAAGCTTCAATGACCAAAACCAC
rJMSF034L08- GTTTGCAGGGTAAGGTGCCCGGTCTCGAAGCGCCTTGTAAGCTTCAATGACCAAAACCAC
rJMFF018C07- GTTTGCAGGGTAAGGTGCCCGGTCTCGAAGCGCCTTGTAAGCTTCAATGACCAAAACCAC
rJMFF025J17- GTTTGCAGGGTAAGGTGCCCGGTCTCGAAGCGCCTTGTAAGCTTCAATGACCAAAACCAC
JMSF034L08+ GTTTGCAGGGTAAGGTGCCCGGTCTCGAAGCGCCTTGTAAGCTTCAATGACCAAAACCAC
JMFF018C07+ GTTTGCAGGGTAAGGTGCCCGGTCTCGAAGCGCCTTGTAAGCTTCAATGACCAAAACCAC
JMFS120B04+ GTTTGCAGGGTAAGGTGCCCGGTCTCGAAGCGCCTTGTAAGCTTCAATGACCAAAACCAC
JMFS085D12+ GTTTGCAGGGTAAGGTGCCCGGTCTCGAAGCGCCTTGTAAGCTTCAATGACCAAAACCAC
JMFF025J17+ GTTTGCAGGGTAAGGTGCCCGGTCTCGAAGCGCCTTGTAAGCTTCAATGACCAAAACCAC
JMSF033D03+ GTTTGCAGGGTAAGGTGCCCGGTCTCGAAGCGCCTTGTAAGCTTCAATGACCAAAACCAC
____________________________________________________________
consensus GTTTGCAGGGTAAGGTGCCCGGTCTCGAAGCGCCTTGTAAGCTTCAATGACCAAAACCAC
. : . : . : . : . : . :
rJMSF033D03- CTCGTTCGCAGACTTTGCANGGCCATATTGNTGCCTCAAAC
rJMSF034L08- CTCGTTCGCAGACTTTGCAAGGNCATATTGTTGCCTCAAACTCCCTAGGGTGTCAAGTGT
rJMFF018C07- CTCGTTCGCANACTTTGCAAGGGCATATTGTTGCCTCAAACTCCCTAGGGTGTCAAGT
rJMFF025J17- CTCGTTCGCAGACTTTGCAAGGCCTTATTGTTGCCTCAAACTCCCTANGGTGTCAAGTGT
JMSF034L08+ CTCGTTCGCAGACTTTGCAAGGCCATATTGTTGCCTCAAACTCCCTAGGTTGTCAAGTGT
JMFF018C07+ CTCGTTCGCAGACTTTGCAAGGCCATATTGTTGCCTCAAACTCCCTAGGTTGTCAAGTGT
JMFS120B04+ CTCGTTCGCAGACTTTGCAAGGCCATATTGTTGCCTCAAACTCCCTAGGTTGTCAAGTGT
JMFS085D12+ CTCGTTCGCAGACTTTGCAAGGCCATATTGTTGCCTCAAACTCCCTAGGTTGTCAAGTGT
JMFF025J17+ CTCGTTCGCAGACTTTGCAAGGCCTTATTGTTGCCTCAAACTCCCTAGGTTGTCAAGTGT
JMSF033D03+ CTCGTTCGCAGACTTTGCAAGGCCATATTGTTGCCTCAAACTCCCTAGGTTGTCAAGTGT
____________________________________________________________
consensus CTCGTTCGCAGACTTTGCAAGGCCATATTGTTGCCTCAAACTCCCTAGGTTGTCAAGTGT
. : . : . : . : . : . :
rJMSF034L08- TCCCTCAAACAAGCAAAATATTTCATCCTTAAC
rJMFF025J17- TCCCTCAAACNAGCAAAATATTTCATCCTTAACCG
JMSF034L08+ TCCCTCAAACAAGCAAAATATTTCATCCTTAACCGCGAACAGTCTGGGCTGTAAAGCGGA
JMFF018C07+ TCCCTCAAACAAGCAAAATATTTCATCCTTAACCGCGAACAGTCTGGGCTGTAAAGCGGA
JMFS120B04+ TCCCTCAAACAAGCAAAATATTTCATCCTTAACCGCGAACAGTCTGGGCTGTAAAGCGGA
JMFS085D12+ TCCCTCAAACAAGCAAAATATTTCATCCTTAACCGCGAACAGTCTGGGCTGTAAAGCGGA
JMFF025J17+ TCCCTCAAACAAGCAAAATATTTCATCCTTAACCGCGAACAGTCTGGGCTGTAAAGCGGA
JMSF033D03+ TCCCTCAAACAAGCAAAATATTTCATCCTTAACCGCGAACAGTCTGGGCTGTAAAGCGGA
____________________________________________________________
consensus TCCCTCAAACAAGCAAAATATTTCATCCTTAACCGCGAACAGTCTGGGCTGTAAAGCGGA
. : . : . : . : . : . :
JMSF034L08+ CTCGTTGGCGTGAGAGTAAGCGAGCTGAGCATCGTCGCCTATCTGCACGGACACCGCCGA
JMFF018C07+ CTCGTTGGCGTGAGAGTAAGCGAGCTGAGCATCGTCGCCTATCTGCACGGACACCGCCGA
JMFS120B04+ CTCGTTGGCGTGAGAGTAAGCGAGCTGAGCATCGTCGCCTATCTGCACGGACACCGCCGA
JMFS085D12+ CTCGTTGGCGTGAGAGTAAGCGAGCTGAGCATCGTCGCCTATCTGCACGGACACCGCCGA
JMFF025J17+ CTCGTTGGCGTGAGAGTAAGCGAGCTGAGCATCGTCGCCTATCTGCACGGACACCGCCGA
JMSF033D03+ CTCGTTGGCGTGAGAGTAAGCGAGCTGAGCATCGTCGCCTATCTGCACGGACACCGCCGA
____________________________________________________________
consensus CTCGTTGGCGTGAGAGTAAGCGAGCTGAGCATCGTCGCCTATCTGCACGGACACCGCCGA
. : . : . : . : . : . :
JMSF034L08+ CGAGTTGGTTTTGAGGAACCGGTTCACCAGAGCGTCCGCCGTGGTCTTCGGAGACGGGGT
JMFF018C07+ CGAGTTGGTTTTGAGGAACCGGTTCACCAGAGCGTCCGCCGTGGTCTTCGGAGACGGGGT
JMFS120B04+ CGAGTTGGTTTTGAGGAACCGGTTCACCAGAGCGTCCGCCGTGGTCTTCGGAGACGGGGT
JMFS085D12+ CGAGTTGGTTTTGAGGAACCGGTTCACCAGAGCGTCCGCCGTGGTCTTCGGAGACGGGGT
JMFF025J17+ CGAGTTGGTTTTGAGGAACCGGTTCACCAGAGCGTCCGCCGTGGTCTTCGGAGACGGGGT
JMSF033D03+ CGAGTTGGTTTTGAGGAACCGGTTCACCAGAGCGTCCGCCGTGGTCTTCGGAGACGGGGT
____________________________________________________________
consensus CGAGTTGGTTTTGAGGAACCGGTTCACCAGAGCGTCCGCCGTGGTCTTCGGAGACGGGGT
. : . : . : . : . : . :
JMSF034L08+ CCGGCTTCCGGCCGCCACCAACTCCTCCGGCGGAGAAACTATCGAGCTGCTAAACACACC
JMFF018C07+ CCGGCTTCCGGCCGCCACCAACTCCTCCGGCGGAGAAACTATCGAGCTGCTAAACACACC
JMFS120B04+ CCGGCTTCCGGCCGCCACCAACTCCTCCGGCGGAGAAACTATCGAGCTGCTAAACACACC
JMFS085D12+ CCGGCTTCCGGCCGCCACCAACTCCTCCGGCGGAGAAACTATCGAGCTGCTAA--ACACC
JMFF025J17+ CCGGCTTCCGGCCGCCACCAACTCCTCCGGCGGAGAAACTATCGAGCTGCTAAACACACC
JMSF033D03+ CCGGCTTCCGGCCGCCACCAACTCCTCCGGCGGAGAAACTATCGAGCTGCTAAACACACC
____________________________________________________________
consensus CCGGCTTCCGGCCGCCACCAACTCCTCCGGCGGAGAAACTATCGAGCTGCTAAACACACC
. : . : . : . : . : . :
JMSF034L08+ CAACATTTTCTCTCTCTCTAGAACTAACCAACGAAAATAAACTAAAATTAAATAAAATAA
JMFF018C07+ CAACATTTTCTCTCTCTCTAGAACTAACCAACGAAAATAAACTAAAATTAAATAAAATAA
JMFS120B04+ CAACATTTTCTCTCTCTCTAGAACTAACCAACGAAAATAAACTAAAATTAAATAAAATAA
JMFS085D12+ CAACATTTTCTCTCTCTCTAGAACTAACCAACGAAAATAAACTAAAATTAAATAAAATAA
JMFF025J17+ CAACATTTTCTCTCTCTCTAGAACTAACCAACGAAAATAAACTAAAATTAAATAAAATAA
JMSF033D03+ CAACATTTTCTCTCTCTCTAGAACTAACCAACGAAAATAAACTAAAATTAAATAAAATAA
____________________________________________________________
consensus CAACATTTTCTCTCTCTCTAGAACTAACCAACGAAAATAAACTAAAATTAAATAAAATAA
. : . : . : . : . : . :
JMSF034L08+ ACGCAACA
JMFF018C07+ ACGCAACACACGCAGTCGCTGTTTCTCTCTCTACAATTATCGAAGGCTAATACAT
JMFS120B04+ ACGCAACACACGCAGTCGCTGTTTCTCTCTC
JMFS085D12+ ACGCAACACACGCAGTCGCTGTTTCTCTCTCTAC
JMFF025J17+ ACGCAACACACGCAGTCGCTGTTTCTCTCTCTACAATTATCGAAGGCTAATACAT
JMSF033D03+ ACGCAACACACGCAGTCGCTGTTTCTCTCTCTACAATTATCGAAGGCTAATACATGGGCC
____________________________________________________________
consensus ACGCAACACACGCAGTCGCTGTTTCTCTCTCTACAATTATCGAAGGCTAATACATGGGCC