clone | seq. | 5'-sequence | 3'-sequence | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
JMFS056G09 | Sequence | 630 | 000923 (9) | emb|CDP17099.1| | 6e-119 | unnamed protein product [Coffea canephora] | |||||
JMSF001G19 | Sequence | 298 | 000923 (9) | ref|XP_009624281.1| | 1e-07 | PREDICTED: probable polygalacturonase [Nicotiana tomentosiformis] | 716 | 000923 (9) | ref|XP_009793676.1| | 1e-44 | PREDICTED: probable polygalacturonase [Nicotiana sylvestris] |
JMSF035M02 | Sequence | 698 | 000923 (9) | ref|XP_009793676.1| | 2e-72 | PREDICTED: probable polygalacturonase [Nicotiana sylvestris] | 641 | 000923 (9) | ref|XP_009793676.1| | 3e-55 | PREDICTED: probable polygalacturonase [Nicotiana sylvestris] |
JMSF042I20 | Sequence | 736 | 000923 (9) | ref|XP_009793676.1| | 3e-72 | PREDICTED: probable polygalacturonase [Nicotiana sylvestris] | 747 | 000923 (9) | ref|XP_006355845.1| | 7e-68 | PREDICTED: probable polygalacturonase-like [Solanum tuberosum] |
JMSF050B20 | Sequence | 691 | 000923 (9) | ref|XP_009793676.1| | 2e-72 | PREDICTED: probable polygalacturonase [Nicotiana sylvestris] | 756 | 000923 (9) | ref|XP_006355845.1| | 1e-79 | PREDICTED: probable polygalacturonase-like [Solanum tuberosum] |
Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.
SCORE============================================Contig000923============================================1883 16 --------------->JMSF001G19 <-------------------------------------rJMSF001G19 132 -------------------------------->JMSF042I20 <--------------------------------------rJMSF042I20 133 -------------------------------->JMSF035M02 <--------------------------------rJMSF035M02 133 -------------------------------->JMSF050B20 <---------------------------------------rJMSF050B20
The following clones don't have the opposite end in this pair.
--------------------------------->JMFS056G09-