| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS056G09 | Sequence | 630 | 000923 (9) | emb|CDP17099.1| | 6e-119 | unnamed protein product [Coffea canephora] | |||||
| JMSF001G19 | Sequence | 298 | 000923 (9) | ref|XP_009624281.1| | 1e-07 | PREDICTED: probable polygalacturonase [Nicotiana tomentosiformis] | 716 | 000923 (9) | ref|XP_009793676.1| | 1e-44 | PREDICTED: probable polygalacturonase [Nicotiana sylvestris] |
| JMSF035M02 | Sequence | 698 | 000923 (9) | ref|XP_009793676.1| | 2e-72 | PREDICTED: probable polygalacturonase [Nicotiana sylvestris] | 641 | 000923 (9) | ref|XP_009793676.1| | 3e-55 | PREDICTED: probable polygalacturonase [Nicotiana sylvestris] |
| JMSF042I20 | Sequence | 736 | 000923 (9) | ref|XP_009793676.1| | 3e-72 | PREDICTED: probable polygalacturonase [Nicotiana sylvestris] | 747 | 000923 (9) | ref|XP_006355845.1| | 7e-68 | PREDICTED: probable polygalacturonase-like [Solanum tuberosum] |
| JMSF050B20 | Sequence | 691 | 000923 (9) | ref|XP_009793676.1| | 2e-72 | PREDICTED: probable polygalacturonase [Nicotiana sylvestris] | 756 | 000923 (9) | ref|XP_006355845.1| | 1e-79 | PREDICTED: probable polygalacturonase-like [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
rJMSF001G19- CTTCAGATCATATAACACCAATA
____________________________________________________________
consensus CTTCAGATCATATAACACCAATA
. : . : . : . : . : . :
rJMSF001G19- TAATAACAAACAATCTTGGGTGGTTCCCATTCCCATACCCAAATTTACAAATGTAAGATG
____________________________________________________________
consensus TAATAACAAACAATCTTGGGTGGTTCCCATTCCCATACCCAAATTTACAAATGTAAGATG
. : . : . : . : . : . :
rJMSF001G19- ACTANTGGTAAAAGAAAATAAATAAATAAATAAACAGCCAAAAGAAGCAAAGTATCTCAN
rJMSF035M02- AGTATCTCAA
rJMSF042I20- AAGTATCTCAA
rJMSF050B20- AGTATCTCAA
____________________________________________________________
consensus ACTANTGGTAAAAGAAAATAAATAAATAAATAAACAGCCAAAAGAAGCAAAGTATCTCAA
. : . : . : . : . : . :
rJMSF001G19- TGCACTGCACTACCAAAACTTTTCTTACACATGAATGAAGAACTGATGCTTTCTGTACAC
rJMSF035M02- TGCACTGCACTACCAAAACTTTTCTTACACATGAATGAAGAACTGATGCTTTCTGTACAC
rJMSF042I20- TGCACTGCACTACCAAAACTTTTCTTACACATGAATGAAGAACTGATGCTTTCTGTACAC
rJMSF050B20- TGCACTGCACTACCAAAACTTTTCTTACACATGAATGAAGAACTGATGCTTTCTGTACAC
____________________________________________________________
consensus TGCACTGCACTACCAAAACTTTTCTTACACATGAATGAAGAACTGATGCTTTCTGTACAC
. : . : . : . : . : . :
rJMSF001G19- AAGTAACCCATTTGAAATGTGAAGTTTCTTCAAGGAATTTGTTTGCCCGATCGACCCTCA
rJMSF035M02- AAGTAACCCATTTGAAATGTGAAGTTTCTTCAAGGAATTTGTTTGCCCGATCGACCCTCA
rJMSF042I20- AAGTAACCCATTTGAAATGTGAAGTTTCTTCAAGGAATTTGTTTGCCCGATCGACCCTCA
rJMSF050B20- AAGTAACCCATTTGAAATGTGAAGTTTCTTCAAGGAATTTGTTTGCCCGATCGACCCTCA
____________________________________________________________
consensus AAGTAACCCATTTGAAATGTGAAGTTTCTTCAAGGAATTTGTTTGCCCGATCGACCCTCA
. : . : . : . : . : . :
rJMSF001G19- TTTTGTCCTTCTGAACCATAACTCGGGGTGTGAGATTATACAGTGACAATGAATTATGTC
rJMSF035M02- TTTTGTCCTTCTGAACCATAACTCGGGGTGTGAGATTATACAGTGACAATGAATTATGTC
rJMSF042I20- TTTTGTCCTTCTGAACCATAACTCGGGGTGTGAGATTATACAGTGACAATGAATTATGTC
rJMSF050B20- TTTTGTCCTTCTGAACCATAACTCGGGGTGTGAGATTATACAGTGACAATGAATTATGTC
____________________________________________________________
consensus TTTTGTCCTTCTGAACCATAACTCGGGGTGTGAGATTATACAGTGACAATGAATTATGTC
. : . : . : . : . : . :
rJMSF001G19- TCTTTCTTTGGAGGGATTATAAGACCGCAACTTGATTGAACGGGGACTGAAAGGAGAAGC
rJMSF035M02- TCTTTCTTTGGAGGGATTATAAGACCGCAACTTGATTGAACGGGGACTGAAAGGAGAAGC
rJMSF042I20- TCTTTCTTTGGAGGGATTATAAGACCGCAACTTGATTGAACGGGGACTGAAAGGAGAAGC
rJMSF050B20- TCTTTCTTTGGAGGGATTATAAGACCGCAACTTGATTGAACGGGGACTGAAAGGAGAAGC
____________________________________________________________
consensus TCTTTCTTTGGAGGGATTATAAGACCGCAACTTGATTGAACGGGGACTGAAAGGAGAAGC
. : . : . : . : . : . :
rJMSF001G19- AAGTTTCGGATGTATTGGCAATTGGGGTCTGAAACTCGGGGCAAGGTTGAGGGGACACAT
rJMSF035M02- AAGTTTCGGATGTATTGGCAATTGGGGTCTGAAACTCGGGGCAAGGTTGAGGGGACACAT
rJMSF042I20- AAGTTTCGGATGTATTGGCAATTGGGGTCTGAAACTCGGGGCAAGGTTGAGGGGACACAT
rJMSF050B20- AAGTTTCGGATGTATTGGCAATTGGGGTCTGAAACTCGGGGCAAGGTTGAGGGGACACAT
____________________________________________________________
consensus AAGTTTCGGATGTATTGGCAATTGGGGTCTGAAACTCGGGGCAAGGTTGAGGGGACACAT
. : . : . : . : . : . :
rJMSF001G19- TTGAAGAGAAACCAGATACGTTAGAACATATCCNTGGTTCAGAAGCAGCAGGCGAGATGG
rJMSF035M02- TTGAAGAGAAACCAGATACGTTAGAACATATCCATGGTTCAGAAGCAGCAGGCGAGATGG
rJMSF042I20- TTGAAGAGAAACCAGATACGTTAGAACATATCCATGGTTCAGAAGCAGCAGGCGAGATGG
rJMSF050B20- TTGAAGAGAAACCAGATACGTTAGAACATATCCATGGTTCAGAAGCAGCAGGCGAGATGG
____________________________________________________________
consensus TTGAAGAGAAACCAGATACGTTAGAACATATCCATGGTTCAGAAGCAGCAGGCGAGATGG
. : . : . : . : . : . :
rJMSF001G19- AGAAGGTTATATTGGACATGCATATAGAGGTAAACGGGGATTCAGATAATCCGGTGAAAT
rJMSF035M02- AGAAGGTTATATTGGACATGCATATAGAGGTAAACGGGGATTCAGATAATCCGGTGAAAT
rJMSF042I20- AGAAGGTTATATTGGACATGCATATAGAGGTAAACGGGGATTCAGATAATCCGGTGAAAT
rJMSF050B20- AGAAGGTTATATTGGACATGCATATAGAGGTAAACGGGGATTCAGATAATCCGGTGAAAT
____________________________________________________________
consensus AGAAGGTTATATTGGACATGCATATAGAGGTAAACGGGGATTCAGATAATCCGGTGAAAT
. : . : . : . : . : . :
rJMSF001G19- TTCCAGCTATGGAGATATTTGATCCAACTATGTCTTCAAAGGAGATTTCACTCACCANTG
rJMSF035M02- TTCCAGCTATGGAGATATTTGATCCAACTATGTCTTCAAAGGAGATTTCACTCACCAATG
rJMSF042I20- TTCCAGCTATGGAGATATTTGATCCAACTATGTCTTCAAAGGAGATTTCACTCACCAATG
rJMSF050B20- TTCCAGCTATGGAGATATTTGATCCAACTATGTCTTCAAAGGAGATTTCACTCACCAATG
____________________________________________________________
consensus TTCCAGCTATGGAGATATTTGATCCAACTATGTCTTCAAAGGAGATTTCACTCACCAATG
. : . : . : . : . : . :
rJMSF001G19- GGAATGCCTCGGGATCATATTCATCGTCTGGATGTGTGTCACAGTAACCGGTAGCCTTTA
rJMSF035M02- GGAATGCCTCGGGATCATATTCATCGTCTGGATGTGTGTCACAGTAACCGGTAGCCTTTA
rJMSF042I20- GGAATGCCTCGGGATCATATTCATCGTCTGGATGTGTGTCACAGTAACCGGTAGCCTTTA
rJMSF050B20- GGAATGCCTCGGGATCATATTCATCGTCTGGATGTGTGTCACAGTAACCGGTAGCCTTTA
____________________________________________________________
consensus GGAATGCCTCGGGATCATATTCATCGTCTGGATGTGTGTCACAGTAACCGGTAGCCTTTA
. : . : . : . : . : . :
rJMSF001G19- TGGCCACCCGTACGTTCTCCATTGCAACATTAG
rJMSF035M02- TGGCCACCCGTACGTTCTCCATTGCAACATTAGAGACGAGAATATCCTGGATATAACCTC
rJMSF042I20- TGGCCACCCGTACGTTCTCCATTGCAACATTAGAGACGAGAATATCCTGGATATAACCTC
rJMSF050B20- TGGCCACCCGTACGTTCTCCATTGCAACATTAGAGACGAGAATATCCTGGATATAACCTC
____________________________________________________________
consensus TGGCCACCCGTACGTTCTCCATTGCAACATTAGAGACGAGAATATCCTGGATATAACCTC
. : . : . : . : . : . :
rJMSF035M02- CCCTTCCC
rJMSF042I20- CCCTTCCCCTGGCAGTCTTCAGCTCAATTCCCACAAAAGAGTTGTGTATGTAGAGGTTCT
rJMSF050B20- CCCTTCCCCTGGCAGTCTTCAGCTCAATTCCCACAAAAGAGTTGTGTATGTAGAGGTTCT
JMFS056G09+ AGGTTCT
____________________________________________________________
consensus CCCTTCCCCTGGCAGTCTTCAGCTCAATTCCCACAAAAGAGTTGTGTATGTAGAGGTTCT
. : . : . : . : . : . :
rJMSF042I20- CCACGAGTACATTTGAGATGCCCACCGGACATCTCGCTGCCAAAAGGTATACCTGCACCT
rJMSF050B20- CCACGAGTACATTTGAGATG-CCACCGGACATCTCGCTGCCNAAAGGTATACCTGCACCT
JMFS056G09+ CCACGAGTACATTTGAGATG-CCACCGGACATCTCGCTGCCAAAAGCTATACCTGCACCT
____________________________________________________________
consensus CCACGAGTACATTTGAGATG-CCACCGGACATCTCGCTGCCAAAAGGTATACCTGCACCT
. : . : . : . : . : . :
rJMSF042I20- ACACTGG
rJMSF050B20- ACNCTGGACTGCAAACGAACCCCTCGA
JMFS056G09+ ACACTGGACTGCAAACGAACCCCTCGAATGTGAACATTTGAGGCAGGTCTCCCGTAGGCA
____________________________________________________________
consensus ACACTGGACTGCAAACGAACCCCTCGAATGTGAACATTTGAGGCAGGTCTCCCGTAGGCA
. : . : . : . : . : . :
JMFS056G09+ ATCCCATACTCGTCCCAGCCACTTTTGAGCACGATGGCATCATGACCCATGCTAATGTTG
____________________________________________________________
consensus ATCCCATACTCGTCCCAGCCACTTTTGAGCACGATGGCATCATGACCCATGCTAATGTTG
. : . : . : . : . : . :
JMFS056G09+ CTATTTTCGATGCAGACGTGCTCAGAAGAGTCTGGGACAATGCCATTAGTATATGGTGAA
____________________________________________________________
consensus CTATTTTCGATGCAGACGTGCTCAGAAGAGTCTGGGACAATGCCATTAGTATATGGTGAA
. : . : . : . : . : . :
JMFS056G09+ CTGTCTGGGGATCGAACTGTTATGTTCTGAACGGTCACATTACTGCAGTAAGCAGGAAAA
____________________________________________________________
consensus CTGTCTGGGGATCGAACTGTTATGTTCTGAACGGTCACATTACTGCAGTAAGCAGGAAAA
. : . : . : . : . : . :
JMFS056G09+ ATGTTCCAAGCGGGGGCATTCAGAAGGGTCAAGTTTGAAATAACAACATAACTGGAACCC
____________________________________________________________
consensus ATGTTCCAAGCGGGGGCATTCAGAAGGGTCAAGTTTGAAATAACAACATAACTGGAACCC
. : . : . : . : . : . :
JMFS056G09+ ACGAATTCTACAAGATTTGGTCGACTGTAATTCAAGGCACCAGCTTCAAACTGCTCCCAC
____________________________________________________________
consensus ACGAATTCTACAAGATTTGGTCGACTGTAATTCAAGGCACCAGCTTCAAACTGCTCCCAC
. : . : . : . : . : . :
JMFS056G09+ CAAACAGAACCCTGCCCATCAATTGTTCCATTATTTCCTGTTATCACAACATCGGTTAAA
JMSF035M02+ CCTGTTATCACAACATCGGTTAAA
JMSF050B20+ CCTGTTATCACAACATCGGTTAAA
JMSF042I20+ CCTGTTATCACAACATCGGTTAAA
____________________________________________________________
consensus CAAACAGAACCCTGCCCATCAATTGTTCCATTATTTCCTGTTATCACAACATCGGTTAAA
. : . : . : . : . : . :
JMFS056G09+ TTATGTCCAGTAATCAAGCTTCGATATCTCCCACCTGGAACATCAATACCTCTCCCATAA
JMSF035M02+ TTATGTCCAGTAATCAAGCTTCGATATCTCCCACCTGGAACATCAATACCTCTCCCATAA
JMSF050B20+ TTATGTCCAGTAATCAAGCTTCGATATCTCCCACCTGGAACATCAATACCTCTCCCATAA
JMSF042I20+ TTATGTCCAGTAATCAAGCTTCGATATCTCCCACCTGGAACATCAATACCTCTCCCATAA
____________________________________________________________
consensus TTATGTCCAGTAATCAAGCTTCGATATCTCCCACCTGGAACATCAATACCTCTCCCATAA
. : . : . : . : . : . :
JMFS056G09+ GATGGTAAGGGATCGACTACACCCCAATGAGCGTAATCCTCTGATCCCAAAATAATGGCA
JMSF035M02+ GATGGTAAGGGATCGACTACACCCCAATGAGCGTAATCCTCTGATCCCAAAATAATGGCA
JMSF050B20+ GATGGTAAGGGATCGACTACACCCCAATGAGCGTAATCCTCTGATCCCAAAATAATGGCA
JMSF042I20+ GATGGTAAGGGATCGACTACACCCCAATGAGCGTAATCCTCTGATCCCAAAATAATGGCA
____________________________________________________________
consensus GATGGTAAGGGATCGACTACACCCCAATGAGCGTAATCCTCTGATCCCAAAATAATGGCA
. : . : . : . : . : . :
JMFS056G09+ TCTTTTTCTAGGAAGAGTGTCAAG
JMSF035M02+ CCTTTTTCTAGGAAGAGTGTCAAGTGGCTAGTAAGGTTGATGCTCCCAGTCAACCACTTT
JMSF050B20+ CCTTTTTCTAGGAAGAGTGTCAAGTGGCTAGTAAGGTTGATGCTCCCAGTCAACCACTTT
JMSF042I20+ CCTTTTTCTAGGAAGAGTGTCAAGTGGCTAGTAAGGTTGATGCTCCCAGTCAACCACTTT
____________________________________________________________
consensus CCTTTTTCTAGGAAGAGTGTCAAGTGGCTAGTAAGGTTGATGCTCCCAGTCAACCACTTT
. : . : . : . : . : . :
JMSF035M02+ CCGGCTGGAACATAGAGCTGTGCCCCGCCCTTATCAGCAAAAGACTTGAGATAAAAAATA
JMSF050B20+ CCGGCTGGAACATAGAGCTGTGCCCCGCCCTTATCAGCAAAAGACTTGAGATAAAAAATA
JMSF042I20+ CCGGCTGGAACATAGAGCTGTGCCCCGCCCTTATCAGCAAAAGACTTGAGATAAAAAATA
____________________________________________________________
consensus CCGGCTGGAACATAGAGCTGTGCCCCGCCCTTATCAGCAAAAGACTTGAGATAAAAAATA
. : . : . : . : . : . :
JMSF035M02+ GCATTCTGAAACGCTACAGAGTTTAACGTTTTCCCATCGCCCACAGCCCCAAAGTCCAAA
JMSF050B20+ GCATTCTGAAACGCTACAGAGTTTAACGTTTTCCCATCGCCCACAGCCCCAAAGTCCAAA
JMSF001G19+ CCAAAGTCCAAA
JMSF042I20+ GCATTCTGAAACGCTACAGAGTTTAACGTTTTCCCATCGCCCACAGCCCCAAAGTCCAAA
____________________________________________________________
consensus GCATTCTGAAACGCTACAGAGTTTAACGTTTTCCCATCGCCCACAGCCCCAAAGTCCAAA
. : . : . : . : . : . :
JMSF035M02+ ACCGATGCACTGTGAGGTCTGGGCTTCAAAGGCTTATTAAACTCGCATTCTCCCTCATAT
JMSF050B20+ ACCGATGCACTGTGAGGTCTGGGCTTCAAAGGCTTATTAAACTCGCATTCTCCCTCATAT
JMSF001G19+ ACCGATGCACTGTGAGGTCTGGGCTTCAAAGGCTTATTAAACTCGCATTCTCCCTCATAT
JMSF042I20+ ACCGATGCACTGTGAGGTCTGGGCTTCAAAGGCTTATTAAACTCGCATTCTCCCTCATAT
____________________________________________________________
consensus ACCGATGCACTGTGAGGTCTGGGCTTCAAAGGCTTATTAAACTCGCATTCTCCCTCATAT
. : . : . : . : . : . :
JMSF035M02+ TGAGCTTCAGCATAATTCAAAGCCAATAGCAAAAGCAGAACTACTTGCACAGAGC----T
JMSF050B20+ TGAGCTTCAGCATAATTCAAAGCCAATAGCAAAAGCAGAACTACTTGCACAGAGC----T
JMSF001G19+ TGAGCTTCAGCATAATTCAAAGCCAATAGCAAAAGCAGAACTACTTGCACAGAGCTACTT
JMSF042I20+ TGAGCTTCAGCATAATTCAAAGCCAATAGCAAAAGCAGAACTACTTGCACAGAGC----T
____________________________________________________________
consensus TGAGCTTCAGCATAATTCAAAGCCAATAGCAAAAGCAGAACTACTTGCACAGAGC----T
. : . : . : . : . : . :
JMSF035M02+ ACTAGCCCCTTCATGGGTTTCCTCACTTTCTCTCCTCCCATCTTAGCGCCGGACCACCAG
JMSF050B20+ ACTAGCCCCTTCATGGGTTTCCTCACTTTCTCTCCTCCCATCTTAGCGCCGGACCACCAG
JMSF001G19+ ACTAGCCCCTTCATGGGTTTCCTCACTTTCTCTCCTCCCATCTTAGCGCCGGACCACCAG
JMSF042I20+ ACTAGCCCCTTCATGGGTTTCCTCACTTTCTCTCCTCCCATCTTAGCGCCGGACCACCAG
____________________________________________________________
consensus ACTAGCCCCTTCATGGGTTTCCTCACTTTCTCTCCTCCCATCTTAGCGCCGGACCACCAG
. : . : . : . : . : . :
JMSF035M02+ CCCACCACCACTCTCCTCCCAGAAGTTTTCAGCACTGTGGGATGAGGGAGGAGGAGGAGG
JMSF050B20+ CCCACCACCACTCTCCTCCCAGAAGTTTTCAGCACTGTGGGATGAGGGAGGAGGAGGAGG
JMSF001G19+ CCCACCACCACTCTCCTCCCAGAAGTTTTCAGCACTGTGGGATGAGGGAGGAGGAGGAGG
JMSF042I20+ CCCACCACCACTCTCCTCCCAGAAGTTTTCAGCACTGTGGGATGAGGGAGGAGGAGGAGG
____________________________________________________________
consensus CCCACCACCACTCTCCTCCCAGAAGTTTTCAGCACTGTGGGATGAGGGAGGAGGAGGAGG
. : . : . : . : . : . :
JMSF035M02+ AGGGAGAGAGAGAGAGAGGAAGAAAGAGAAATGGTATAATTGTATGATACTTGTGACGCC
JMSF050B20+ AGGGAGAGAGAGAGAGAGGAAGAAAGAGAAATGGTATAATTGTATGATACTTGTGACGCC
JMSF001G19+ AGGGAGAGAGAGAGAGAGGAAGAAAGAGAAATGGTATAATTGTAT
JMSF042I20+ AGGGAGAGAGAGAGAGAGGAAGAAAGAGAAATGGTATAATTGTATGATACTTGTGACGCC
____________________________________________________________
consensus AGGGAGAGAGAGAGAGAGGAAGAAAGAGAAATGGTATAATTGTATGATACTTGTGACGCC