clone | seq. | 5'-sequence | 3'-sequence | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
JMFF016P23 | Sequence | 510 | 001090 (9) | ref|XP_006376154.1| | 5e-74 | hypothetical protein POPTR_0013s10300g, partial [Populus trichocarpa] gb|ERP5395 | 614 | 001090 (9) | ref|XP_006376154.1| | 2e-73 | hypothetical protein POPTR_0013s10300g, partial [Populus trichocarpa] gb|ERP5395 |
JMFF024D18 | Sequence | 446 | 001090 (9) | ref|XP_006376154.1| | 2e-74 | hypothetical protein POPTR_0013s10300g, partial [Populus trichocarpa] gb|ERP5395 | 595 | 001090 (9) | ref|XP_006376154.1| | 1e-73 | hypothetical protein POPTR_0013s10300g, partial [Populus trichocarpa] gb|ERP5395 |
JMFN037D12 | Sequence | 495 | 001090 (9) | ref|XP_006376154.1| | 2e-50 | hypothetical protein POPTR_0013s10300g, partial [Populus trichocarpa] gb|ERP5395 | |||||
JMFN038J10 | Sequence | 611 | 001090 (9) | ref|XP_006376154.1| | 2e-73 | hypothetical protein POPTR_0013s10300g, partial [Populus trichocarpa] gb|ERP5395 | |||||
JMFN040H02 | Sequence | 592 | 001090 (9) | ref|XP_006376154.1| | 1e-73 | hypothetical protein POPTR_0013s10300g, partial [Populus trichocarpa] gb|ERP5395 | |||||
JMFN041J19 | Sequence | 611 | 001090 (9) | ref|XP_006376154.1| | 2e-73 | hypothetical protein POPTR_0013s10300g, partial [Populus trichocarpa] gb|ERP5395 | |||||
JMFN043E15 | Sequence | 588 | 001090 (9) | ref|XP_006376154.1| | 1e-73 | hypothetical protein POPTR_0013s10300g, partial [Populus trichocarpa] gb|ERP5395 |
Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.
SCORE============================================Contig001090============================================ 637 34 ------------------------------------------------------------------------------->JMFF016P23 <----------------------------------------------------------------------------------------------rJMFF016P23 52 --------------------------------------------------------------------->JMFF024D18 <-------------------------------------------------------------------------------------------rJMFF024D18
The following clones don't have the opposite end in this pair.
------------------------------------------------------------------------>JMFN037D12- ----------------------------------------------------------------------------------------------->JMFN038J10- -------------------------------------------------------------------------------------------->JMFN040H02- ----------------------------------------------------------------------------------------------->JMFN041J19- -------------------------------------------------------------------------------------------->JMFN043E15-