Contig 001090:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016P23Sequence510001090 (9)ref|XP_006376154.1|5e-74hypothetical protein POPTR_0013s10300g, partial [Populus trichocarpa] gb|ERP5395614001090 (9)ref|XP_006376154.1|2e-73hypothetical protein POPTR_0013s10300g, partial [Populus trichocarpa] gb|ERP5395
JMFF024D18Sequence446001090 (9)ref|XP_006376154.1|2e-74hypothetical protein POPTR_0013s10300g, partial [Populus trichocarpa] gb|ERP5395595001090 (9)ref|XP_006376154.1|1e-73hypothetical protein POPTR_0013s10300g, partial [Populus trichocarpa] gb|ERP5395
JMFN037D12Sequence495001090 (9)ref|XP_006376154.1|2e-50hypothetical protein POPTR_0013s10300g, partial [Populus trichocarpa] gb|ERP5395
JMFN038J10Sequence611001090 (9)ref|XP_006376154.1|2e-73hypothetical protein POPTR_0013s10300g, partial [Populus trichocarpa] gb|ERP5395
JMFN040H02Sequence592001090 (9)ref|XP_006376154.1|1e-73hypothetical protein POPTR_0013s10300g, partial [Populus trichocarpa] gb|ERP5395
JMFN041J19Sequence611001090 (9)ref|XP_006376154.1|2e-73hypothetical protein POPTR_0013s10300g, partial [Populus trichocarpa] gb|ERP5395
JMFN043E15Sequence588001090 (9)ref|XP_006376154.1|1e-73hypothetical protein POPTR_0013s10300g, partial [Populus trichocarpa] gb|ERP5395

Alignment

This contig is upended


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JMFN040H02+                                             AAAAAAACATCGTTATTTTGGAATTG
JMFN043E15+                                             AAAAAAACATCGTTATTTTGGAATTG
JMFN038J10+                                  GCGCAGATGTTAAAAAAACATCGTTATTTGNGAATTG
JMFN041J19+                                             AAAAAAACATCGTTATTCTGGAATTG
rJMFF016P23-                                                                  ATTG
                      ____________________________________________________________
consensus                                    GCGCAGATGTTAAAAAAACATCGTTATTTTGGAATTG
 
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JMFN040H02+           AATTGAATGTGTGTTTTTAAATTTTAACGTTTGGCAAGTGCAATAAAACCTCTCATGCAA
JMFN043E15+           AATTGAATGTGTGTTTTTAACTTTTAACGTTTGGCAAGTGCAATAAAACCTCTCATGCAA
JMFN038J10+           AATTGAATGTGTGTTTTTAACTTNTAACGTTTGGCAAGTGCAATAAAACCTCTCATGCAA
JMFN041J19+           AATAGAATGTGTGTTTTTAACTTTTAACGTTTGGCAAGTGCAATAAAACCTCTCATGCAA
rJMFF024D18-                        TTTTTACTTTTAACGTTTGGCAAGTGCAATAAAACCTCTCATGCAA
rJMFF016P23-          AATTGAATGTGTGTTTTTAACTTTTAACGTTTGGCAAGTGCAATAAAACCTCTCATGCAA
                      ____________________________________________________________
consensus             AATTGAATGTGTGTTTTTAACTTTTAACGTTTGGCAAGTGCAATAAAACCTCTCATGCAA
 
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JMFN040H02+           AGAGGCAAAACAAGAGCTCTATGAAACAATTAGCACAGGATACCAGAAAAAGGTCTCTTT
JMFN037D12+                                                   TACCAGAAAAAGGTCTGTTT
JMFN043E15+           AGAGGCAAAACAAGAGCTCTATGAAACAATTAGCACAGGATACCAGAAAAAGGTCTCTTT
JMFN038J10+           AGAGGCAAAACAAGAGCTCTATGAAACAATTAGCACAGGATACCAGAAAAAGGTCTCTTT
JMFN041J19+           AGAGGCAAAACAAGAGCTCTATGAAACAATTAGCACAGGATACCAGAAAAAGGTCTCTTT
rJMFF024D18-          AGAGGCAAAACAAGAGCTCTATGAAACAATTAGCACAGGATACCAGAAAAAGGTCTCTTT
JMFF016P23+                                      AATTAGCACAGGATACCAGAAAAAGGTCTCTTT
rJMFF016P23-          AGAGGCAAAACAAGAGCTCTATGAAACAATTAGCACAGGATACCAGAAAAAGGTCTCTTT
                      ____________________________________________________________
consensus             AGAGGCAAAACAAGAGCTCTATGAAACAATTAGCACAGGATACCAGAAAAAGGTCTCTTT
 
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JMFN040H02+           ATTACAAAGAATAATGGGTAACTGGTCAACTTAGCTTAGCTTAGGCAAAATCATTCATTA
JMFN037D12+           ATTACAAAGAATAAGGGGTAGGTGGTCAGGTTAGGTTAGCTGAGGCAGAATCATTCGTTA
JMFN043E15+           ATTACAAAGAATAATGGGTAACTGGTCAACTTAGCTTAGCTTAGGCAAAATCATTCATTA
JMFN038J10+           ATTACAAAGAATAATGGGTAACTGGTCAACTTAGCTTAGCTTAGGCAAAATCATTCATTA
JMFN041J19+           ATTACAAAGAATAATGGGTAACTGGTCAACTTAGCTTAGCTTAGGCAAAATCATTCATTA
rJMFF024D18-          ATTACAAAGAATAATGGGTAACTGGTCAACTTAGCTTAGCTTAGGCAAAATCATTCATTA
JMFF016P23+           ATTACAAAGAATAATGGGTAACTGGTCAACTTAGCTTAGCTTAGGCAAAATCATTCATTA
JMFF024D18+                                         TTAGCTTAGCTTAGGCAAAATCATTCATTA
rJMFF016P23-          ATTACAAAGAATAATGGGTAACTGGTCAACTTAGCTTAGCTTAGGCAAAATCATTCATTA
                      ____________________________________________________________
consensus             ATTACAAAGAATAATGGGTAACTGGTCAACTTAGCTTAGCTTAGGCAAAATCATTCATTA
 
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JMFN040H02+           AGCTGT-TGACTCTTTAAGATATGCAATGAGGTCAGCA-CGCTCTTGTGGCTTCTTCAAT
JMFN037D12+           AGGTGTGTGACTCTTTAAGATATTCAATGAGGTCAGCAGCGCTGTAGTGGCTTCTTCAAT
JMFN043E15+           AGCTGT-TGACTCTTTAAGATATGCAATGAGGTCAGCA-CGCTCTTGTGGCTTCTTCAAT
JMFN038J10+           AGCTGT-TGACTCTTTAAGATATGCAATGAGGTCAGCA-CGCTCTTGTGGCTTCTTCAAT
JMFN041J19+           AGCTGT-TGACTCTTTAAGATATGCAATGAGGTCAGCA-CGCTCTTGTGGCTTCTTCAAT
rJMFF024D18-          AGCTGT-TGACTCTTTAAGATATGCAATGAGGTCAGCA-CGCTCTTGTGGCTTCTTCAAT
JMFF016P23+           AGCTGT-TGACTCTTTAAGATATGCAATGAGGTCAGCA-CGCTCTTGTGGCTTCTTCAAT
JMFF024D18+           AGCTGT-TGACTCTTTAAGATATGCAATGAGGTCAGCA-CGCTCTTGTGGCTTCTTCAAT
rJMFF016P23-          AGCTGT-TGACTCTTTAAGATATGCAATGAGGTCAGCA-CGCTCTTGTGGCTTCTTCAAT
                      ____________________________________________________________
consensus             AGCTGT-TGACTCTTTAAGATATGCAATGAGGTCAGCA-CGCTCTTGTGGCTTCTTCAAT
 
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JMFN040H02+           CCTGGAAAAACCATCTTTGTTCC-GGGGATATACTTCTTTGGGTTAAGCAAATAGTCATA
JMFN037D12+           TCTGGAAAAGCCATTTTTGTTCCGGGGGATATACGTCTTTGGGGTAAGCAAATAGTCATG
JMFN043E15+           CCTGGAAAAACCATCTTTGTTCC-GGGGATATACTTCTTTGGGTTAAGCAAATAGTCATA
JMFN038J10+           CCTGGAAAAACCATCTTTGTTCC-GGGGATATACTTCTTTGGGTTAAGCAAATAGTCATA
JMFN041J19+           CCTGGAAAAACCATCTTTGTTCC-GGGGATATACTTCTTTGGGTTAAGCAAATAGTCATA
rJMFF024D18-          CCTGGAAAAACCATCTTTGTTCC-GGGGATATACTTCTTTGGGTTAAGCAAATAGTCATA
JMFF016P23+           CCTGGAAAAACCATCTTTGTTCC-GGGGATATACTTCTTTGGGTTAAGCAAATAGTCATA
JMFF024D18+           CCTGGAAAAACCATCTTTGTTCC-GGGGATATACTTCTTTGGGTTAAGCAAATAGTCATA
rJMFF016P23-          CCTGGAAAAACCATCTTTGTTCC-GGGGATATACTTCTTTGGGTTAAGCAAATAGTCATA
                      ____________________________________________________________
consensus             CCTGGAAAAACCATCTTTGTTCC-GGGGATATACTTCTTTGGGTTAAGCAAATAGTCATA
 
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JMFN040H02+           CAGCGTCTTTTCTTGCCAAATAACAGCCATGTTCTTGTTAGCAGCAGAGTAGGAGTAACC
JMFN037D12+           CAGGGTCTTTTCTTGCCAAATAACAGCCATGTTCTTGTTAGCAGCAGAGTAGGAGTAGCC
JMFN043E15+           CAGCGTCTTTTCTTGCCAAATAACAGCCATGTTCTTGTTAGCAGCAGAGTAGGAGTAACC
JMFN038J10+           CAGCGTCTTTTCTTGCCAAATAACAGCCATGTTCTTGTTAGCAGCAGAGTAGGAGTAACC
JMFN041J19+           CAGCGTCTTTTCTTGCCAAATAACAGCCATGTTCTTGTTAGCAGCAGAGTAGGAGTAACC
rJMFF024D18-          CAGCGTCTTTTCTTGCCAAATAACAGCCATGTTCTTGTTAGCAGCAGAGTAGGAGTAACC
JMFF016P23+           CAGCGTCTTTTCTTGCCAAATAACAGCCATGTTCTTGTTAGCAGCAGAGTAGGAGTAACC
JMFF024D18+           CAGCGTCTTTTCTTGCCAAATAACAGCCATGTTCTTGTTAGCAGCAGAGTAGGAGTAACC
rJMFF016P23-          CAGCGTCTTTTCTTGCCAAATAACAGCCATGTTCTTGTTAGCAGCAGAGTAGGAGTAACC
                      ____________________________________________________________
consensus             CAGCGTCTTTTCTTGCCAAATAACAGCCATGTTCTTGTTAGCAGCAGAGTAGGAGTAACC
 
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JMFN040H02+           AGGAGTAGTTCCAGACTGCCTACCAAAAAGACCATTCAAATTCGGCCCTTGTTTGTGGCC
JMFN037D12+           AGGAGTAGTTCCAGACTGCCTACCAAAAAGACCATTCAAATTCGGCCCTGGTTTGTGGCC
JMFN043E15+           AGGAGTAGTTCCAGACTGCCTACCAAAAAGACCATTCAAATTCGGCCCTTGTTTGTGGCC
JMFN038J10+           AGGAGTAGTTCCAGACTGCCTACCAAAAAGACCATTCAAATTCGGCCCTTGTTTGTGGCC
JMFN041J19+           AGGAGTAGTTCCAGACTGCCTACCAAAAAGACCATTCAAATTCGGCCCTTGTTTGTGGCC
rJMFF024D18-          AGGAGTAGTTCCAGACTGCCTACCAAAAAGACCATTCAAATTCGGCCCTTGTTTGTGGCC
JMFF016P23+           AGGAGTAGTTCCAGACTGCCTACCAAAAAGACCATTCAAATTCGGCCCTTGTTTGTGGCC
JMFF024D18+           AGGAGTAGTTCCAGACTGCCTACCAAAAAGACCATTCAAATTCGGCCCTTGTTTGTGGCC
rJMFF016P23-          AGGAGTAGTTCCAGACTGCCTACCAAAAAGACCATTCAAATTCGGCCCTTGTTTGTGGCC
                      ____________________________________________________________
consensus             AGGAGTAGTTCCAGACTGCCTACCAAAAAGACCATTCAAATTCGGCCCTTGTTTGTGGCC
 
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JMFN040H02+           GGCGCCTTTGTCGACGGTGTGGCACTGAGCGCATTTGGTCCTGAAGATCTTCTCCCCGGC
JMFN037D12+           GGCGCCTTTGTCGACGGTGTGGCATTGAGCGCATTTGGTCCTGAAGATCTTCTCCCCGGC
JMFN043E15+           GGCGCCTTTGTCGACGGTGTGGCACTGAGCGCATTTGGTCCTGAAGATCTTCTCCCCGGC
JMFN038J10+           GGCGCCTTTGTCGACGGTGTGGCACTGAGCGCATTTGGTCCTGAAGATCTTCTCCCCGGC
JMFN041J19+           GGCGCCTTTGTCGACGGTGTGGCACTGAGCGCATTTGGTCCTGAAGATCTTCTCCCCGGC
rJMFF024D18-          GGCGCCTTTGTCGACGGTGTGGCACTGAGCGCATTTGGTCCTAAAGATCTTCTCCCCGGC
JMFF016P23+           GGCGCCTTTGTCGACGGTGTGGCACTGAGCGCATTTGGTCCTGAAGATCTTCTCCCCGGC
JMFF024D18+           GGCGCCTTTGTCGACGGTGTGGCACTGAGCGCATTTGGTCCTAAAGATCTTCTCCCCGGC
rJMFF016P23-          GGCGCCTTTGTCGACGGTGTGGCACTGAGCGCATTTGGTCCTGAAGATCTTCTCCCCGGC
                      ____________________________________________________________
consensus             GGCGCCTTTGTCGACGGTGTGGCACTGAGCGCATTTGGTCCTGAAGATCTTCTCCCCGGC
 
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JMFN040H02+           TTTCACGTCTCCCGGCGGTGCCTCTGCGAACGACGCCATTTCTTTACCTTCTTTGTTTGT
JMFN037D12+           TTTCACGTCTCCCGGCGGTGCCTCTGCGAACGACGCCATTTCTTTACCTTCTTTGTTTGT
JMFN043E15+           TTTCACGTCTCCCGGCGGTGCCTCTGCGAACGACGCCATTTCTTTACCTTCTTTGTTTGT
JMFN038J10+           TTTCACGTCTCCCGGCGGTGCCTCTGCGAACGACGCCATTTCTTTACCTTCTTTGTTTGT
JMFN041J19+           TTTCACGTCTCCCGGCGGTGCCTCTGCGAACGACGCCATTTCTCTACCTTCTTCGTTTGT
rJMFF024D18-          TTTCACGTCTCCCGGCGGTGCCTCTGCGAACGACGCCATTTCTTTACCTTCTTTGTTTGT
JMFF016P23+           TTTCACGTCTCCCGGCGGTGCCTCTGCGAACGACGCCATTTCTTTACCTTCTTTGTTTGT
JMFF024D18+           TTTCACGTCTCCCGGCGGTGCCTCTGCGAACGACGCCATTTCTTTACCTTCTTTGTTTGT
rJMFF016P23-          TTTCACGTCTCCCGGCGGTGCCTCTGCGAACGACGCCATTTCTTTACCTTCTTTGTTTGT
                      ____________________________________________________________
consensus             TTTCACGTCTCCCGGCGGTGCCTCTGCGAACGACGCCATTTCTTTACCTTCTTTGTTTGT
 
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JMFN040H02+           TTGTTATTTTTGGGTGTTTCTAGAAGGAA                               
JMFN037D12+           TGGTTATTTTTGGGTGTTTCTAGA                                    
JMFN043E15+           TTGTTATTTTTGGGTGTTTCTAGAA                                   
JMFN038J10+           TTGTTATTTTTGGGTGTTTCTAGAAGGAATAGTACAA                       
JMFN041J19+           TTGTTATTTTTGGGTGTTTCTAGAAGGAATAGTACAACGGGGAAAGGA            
rJMFF024D18-          TTGTTATTTTTGGGTGTTTCTAGAAGGAATAGTACAACGGGGAAAGGAGGTGTGGAACT 
JMFF016P23+           TTGTTATTTTTGGGTGTTTCTAGAAGGAATAGTACAACGGGGAAAGGAGGTGTGGAACT 
JMFF024D18+           TTGTTATTTTTGGGTGTTTCTAGAAGGAATAGTACAACGGGGAAAGGAGGTGTGGAACT 
rJMFF016P23-          TTGTTATTTTTGGGTGTTTCTAGAAGGAATAGTACAACGGGGAAAGGAGGTGTGGAACTA
                      ____________________________________________________________
consensus             TTGTTATTTTTGGGTGTTTCTAGAAGGAATAGTACAACGGGGAAAGGAGGTGTGGAACTA