Contig 001090:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016P23Sequence510001090 (9)ref|XP_006376154.1|5e-74hypothetical protein POPTR_0013s10300g, partial [Populus trichocarpa] gb|ERP5395614001090 (9)ref|XP_006376154.1|2e-73hypothetical protein POPTR_0013s10300g, partial [Populus trichocarpa] gb|ERP5395
JMFF024D18Sequence446001090 (9)ref|XP_006376154.1|2e-74hypothetical protein POPTR_0013s10300g, partial [Populus trichocarpa] gb|ERP5395595001090 (9)ref|XP_006376154.1|1e-73hypothetical protein POPTR_0013s10300g, partial [Populus trichocarpa] gb|ERP5395
JMFN037D12Sequence495001090 (9)ref|XP_006376154.1|2e-50hypothetical protein POPTR_0013s10300g, partial [Populus trichocarpa] gb|ERP5395
JMFN038J10Sequence611001090 (9)ref|XP_006376154.1|2e-73hypothetical protein POPTR_0013s10300g, partial [Populus trichocarpa] gb|ERP5395
JMFN040H02Sequence592001090 (9)ref|XP_006376154.1|1e-73hypothetical protein POPTR_0013s10300g, partial [Populus trichocarpa] gb|ERP5395
JMFN041J19Sequence611001090 (9)ref|XP_006376154.1|2e-73hypothetical protein POPTR_0013s10300g, partial [Populus trichocarpa] gb|ERP5395
JMFN043E15Sequence588001090 (9)ref|XP_006376154.1|1e-73hypothetical protein POPTR_0013s10300g, partial [Populus trichocarpa] gb|ERP5395

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN040H02+ AAAAAAACATCGTTATTTTGGAATTG
JMFN043E15+ AAAAAAACATCGTTATTTTGGAATTG
JMFN038J10+ GCGCAGATGTTAAAAAAACATCGTTATTTGNGAATTG
JMFN041J19+ AAAAAAACATCGTTATTCTGGAATTG
rJMFF016P23- ATTG
                      ____________________________________________________________
consensus GCGCAGATGTTAAAAAAACATCGTTATTTTGGAATTG
 
. : . : . : . : . : . :
JMFN040H02+ AATTGAATGTGTGTTTTTAAATTTTAACGTTTGGCAAGTGCAATAAAACCTCTCATGCAA
JMFN043E15+ AATTGAATGTGTGTTTTTAACTTTTAACGTTTGGCAAGTGCAATAAAACCTCTCATGCAA
JMFN038J10+ AATTGAATGTGTGTTTTTAACTTNTAACGTTTGGCAAGTGCAATAAAACCTCTCATGCAA
JMFN041J19+ AATAGAATGTGTGTTTTTAACTTTTAACGTTTGGCAAGTGCAATAAAACCTCTCATGCAA
rJMFF024D18- TTTTTACTTTTAACGTTTGGCAAGTGCAATAAAACCTCTCATGCAA
rJMFF016P23- AATTGAATGTGTGTTTTTAACTTTTAACGTTTGGCAAGTGCAATAAAACCTCTCATGCAA
                      ____________________________________________________________
consensus AATTGAATGTGTGTTTTTAACTTTTAACGTTTGGCAAGTGCAATAAAACCTCTCATGCAA
 
. : . : . : . : . : . :
JMFN040H02+ AGAGGCAAAACAAGAGCTCTATGAAACAATTAGCACAGGATACCAGAAAAAGGTCTCTTT
JMFN037D12+ TACCAGAAAAAGGTCTGTTT
JMFN043E15+ AGAGGCAAAACAAGAGCTCTATGAAACAATTAGCACAGGATACCAGAAAAAGGTCTCTTT
JMFN038J10+ AGAGGCAAAACAAGAGCTCTATGAAACAATTAGCACAGGATACCAGAAAAAGGTCTCTTT
JMFN041J19+ AGAGGCAAAACAAGAGCTCTATGAAACAATTAGCACAGGATACCAGAAAAAGGTCTCTTT
rJMFF024D18- AGAGGCAAAACAAGAGCTCTATGAAACAATTAGCACAGGATACCAGAAAAAGGTCTCTTT
JMFF016P23+ AATTAGCACAGGATACCAGAAAAAGGTCTCTTT
rJMFF016P23- AGAGGCAAAACAAGAGCTCTATGAAACAATTAGCACAGGATACCAGAAAAAGGTCTCTTT
                      ____________________________________________________________
consensus AGAGGCAAAACAAGAGCTCTATGAAACAATTAGCACAGGATACCAGAAAAAGGTCTCTTT
 
. : . : . : . : . : . :
JMFN040H02+ ATTACAAAGAATAATGGGTAACTGGTCAACTTAGCTTAGCTTAGGCAAAATCATTCATTA
JMFN037D12+ ATTACAAAGAATAAGGGGTAGGTGGTCAGGTTAGGTTAGCTGAGGCAGAATCATTCGTTA
JMFN043E15+ ATTACAAAGAATAATGGGTAACTGGTCAACTTAGCTTAGCTTAGGCAAAATCATTCATTA
JMFN038J10+ ATTACAAAGAATAATGGGTAACTGGTCAACTTAGCTTAGCTTAGGCAAAATCATTCATTA
JMFN041J19+ ATTACAAAGAATAATGGGTAACTGGTCAACTTAGCTTAGCTTAGGCAAAATCATTCATTA
rJMFF024D18- ATTACAAAGAATAATGGGTAACTGGTCAACTTAGCTTAGCTTAGGCAAAATCATTCATTA
JMFF016P23+ ATTACAAAGAATAATGGGTAACTGGTCAACTTAGCTTAGCTTAGGCAAAATCATTCATTA
JMFF024D18+ TTAGCTTAGCTTAGGCAAAATCATTCATTA
rJMFF016P23- ATTACAAAGAATAATGGGTAACTGGTCAACTTAGCTTAGCTTAGGCAAAATCATTCATTA
                      ____________________________________________________________
consensus ATTACAAAGAATAATGGGTAACTGGTCAACTTAGCTTAGCTTAGGCAAAATCATTCATTA
 
. : . : . : . : . : . :
JMFN040H02+ AGCTGT-TGACTCTTTAAGATATGCAATGAGGTCAGCA-CGCTCTTGTGGCTTCTTCAAT
JMFN037D12+ AGGTGTGTGACTCTTTAAGATATTCAATGAGGTCAGCAGCGCTGTAGTGGCTTCTTCAAT
JMFN043E15+ AGCTGT-TGACTCTTTAAGATATGCAATGAGGTCAGCA-CGCTCTTGTGGCTTCTTCAAT
JMFN038J10+ AGCTGT-TGACTCTTTAAGATATGCAATGAGGTCAGCA-CGCTCTTGTGGCTTCTTCAAT
JMFN041J19+ AGCTGT-TGACTCTTTAAGATATGCAATGAGGTCAGCA-CGCTCTTGTGGCTTCTTCAAT
rJMFF024D18- AGCTGT-TGACTCTTTAAGATATGCAATGAGGTCAGCA-CGCTCTTGTGGCTTCTTCAAT
JMFF016P23+ AGCTGT-TGACTCTTTAAGATATGCAATGAGGTCAGCA-CGCTCTTGTGGCTTCTTCAAT
JMFF024D18+ AGCTGT-TGACTCTTTAAGATATGCAATGAGGTCAGCA-CGCTCTTGTGGCTTCTTCAAT
rJMFF016P23- AGCTGT-TGACTCTTTAAGATATGCAATGAGGTCAGCA-CGCTCTTGTGGCTTCTTCAAT
                      ____________________________________________________________
consensus AGCTGT-TGACTCTTTAAGATATGCAATGAGGTCAGCA-CGCTCTTGTGGCTTCTTCAAT
 
. : . : . : . : . : . :
JMFN040H02+ CCTGGAAAAACCATCTTTGTTCC-GGGGATATACTTCTTTGGGTTAAGCAAATAGTCATA
JMFN037D12+ TCTGGAAAAGCCATTTTTGTTCCGGGGGATATACGTCTTTGGGGTAAGCAAATAGTCATG
JMFN043E15+ CCTGGAAAAACCATCTTTGTTCC-GGGGATATACTTCTTTGGGTTAAGCAAATAGTCATA
JMFN038J10+ CCTGGAAAAACCATCTTTGTTCC-GGGGATATACTTCTTTGGGTTAAGCAAATAGTCATA
JMFN041J19+ CCTGGAAAAACCATCTTTGTTCC-GGGGATATACTTCTTTGGGTTAAGCAAATAGTCATA
rJMFF024D18- CCTGGAAAAACCATCTTTGTTCC-GGGGATATACTTCTTTGGGTTAAGCAAATAGTCATA
JMFF016P23+ CCTGGAAAAACCATCTTTGTTCC-GGGGATATACTTCTTTGGGTTAAGCAAATAGTCATA
JMFF024D18+ CCTGGAAAAACCATCTTTGTTCC-GGGGATATACTTCTTTGGGTTAAGCAAATAGTCATA
rJMFF016P23- CCTGGAAAAACCATCTTTGTTCC-GGGGATATACTTCTTTGGGTTAAGCAAATAGTCATA
                      ____________________________________________________________
consensus CCTGGAAAAACCATCTTTGTTCC-GGGGATATACTTCTTTGGGTTAAGCAAATAGTCATA
 
. : . : . : . : . : . :
JMFN040H02+ CAGCGTCTTTTCTTGCCAAATAACAGCCATGTTCTTGTTAGCAGCAGAGTAGGAGTAACC
JMFN037D12+ CAGGGTCTTTTCTTGCCAAATAACAGCCATGTTCTTGTTAGCAGCAGAGTAGGAGTAGCC
JMFN043E15+ CAGCGTCTTTTCTTGCCAAATAACAGCCATGTTCTTGTTAGCAGCAGAGTAGGAGTAACC
JMFN038J10+ CAGCGTCTTTTCTTGCCAAATAACAGCCATGTTCTTGTTAGCAGCAGAGTAGGAGTAACC
JMFN041J19+ CAGCGTCTTTTCTTGCCAAATAACAGCCATGTTCTTGTTAGCAGCAGAGTAGGAGTAACC
rJMFF024D18- CAGCGTCTTTTCTTGCCAAATAACAGCCATGTTCTTGTTAGCAGCAGAGTAGGAGTAACC
JMFF016P23+ CAGCGTCTTTTCTTGCCAAATAACAGCCATGTTCTTGTTAGCAGCAGAGTAGGAGTAACC
JMFF024D18+ CAGCGTCTTTTCTTGCCAAATAACAGCCATGTTCTTGTTAGCAGCAGAGTAGGAGTAACC
rJMFF016P23- CAGCGTCTTTTCTTGCCAAATAACAGCCATGTTCTTGTTAGCAGCAGAGTAGGAGTAACC
                      ____________________________________________________________
consensus CAGCGTCTTTTCTTGCCAAATAACAGCCATGTTCTTGTTAGCAGCAGAGTAGGAGTAACC
 
. : . : . : . : . : . :
JMFN040H02+ AGGAGTAGTTCCAGACTGCCTACCAAAAAGACCATTCAAATTCGGCCCTTGTTTGTGGCC
JMFN037D12+ AGGAGTAGTTCCAGACTGCCTACCAAAAAGACCATTCAAATTCGGCCCTGGTTTGTGGCC
JMFN043E15+ AGGAGTAGTTCCAGACTGCCTACCAAAAAGACCATTCAAATTCGGCCCTTGTTTGTGGCC
JMFN038J10+ AGGAGTAGTTCCAGACTGCCTACCAAAAAGACCATTCAAATTCGGCCCTTGTTTGTGGCC
JMFN041J19+ AGGAGTAGTTCCAGACTGCCTACCAAAAAGACCATTCAAATTCGGCCCTTGTTTGTGGCC
rJMFF024D18- AGGAGTAGTTCCAGACTGCCTACCAAAAAGACCATTCAAATTCGGCCCTTGTTTGTGGCC
JMFF016P23+ AGGAGTAGTTCCAGACTGCCTACCAAAAAGACCATTCAAATTCGGCCCTTGTTTGTGGCC
JMFF024D18+ AGGAGTAGTTCCAGACTGCCTACCAAAAAGACCATTCAAATTCGGCCCTTGTTTGTGGCC
rJMFF016P23- AGGAGTAGTTCCAGACTGCCTACCAAAAAGACCATTCAAATTCGGCCCTTGTTTGTGGCC
                      ____________________________________________________________
consensus AGGAGTAGTTCCAGACTGCCTACCAAAAAGACCATTCAAATTCGGCCCTTGTTTGTGGCC
 
. : . : . : . : . : . :
JMFN040H02+ GGCGCCTTTGTCGACGGTGTGGCACTGAGCGCATTTGGTCCTGAAGATCTTCTCCCCGGC
JMFN037D12+ GGCGCCTTTGTCGACGGTGTGGCATTGAGCGCATTTGGTCCTGAAGATCTTCTCCCCGGC
JMFN043E15+ GGCGCCTTTGTCGACGGTGTGGCACTGAGCGCATTTGGTCCTGAAGATCTTCTCCCCGGC
JMFN038J10+ GGCGCCTTTGTCGACGGTGTGGCACTGAGCGCATTTGGTCCTGAAGATCTTCTCCCCGGC
JMFN041J19+ GGCGCCTTTGTCGACGGTGTGGCACTGAGCGCATTTGGTCCTGAAGATCTTCTCCCCGGC
rJMFF024D18- GGCGCCTTTGTCGACGGTGTGGCACTGAGCGCATTTGGTCCTAAAGATCTTCTCCCCGGC
JMFF016P23+ GGCGCCTTTGTCGACGGTGTGGCACTGAGCGCATTTGGTCCTGAAGATCTTCTCCCCGGC
JMFF024D18+ GGCGCCTTTGTCGACGGTGTGGCACTGAGCGCATTTGGTCCTAAAGATCTTCTCCCCGGC
rJMFF016P23- GGCGCCTTTGTCGACGGTGTGGCACTGAGCGCATTTGGTCCTGAAGATCTTCTCCCCGGC
                      ____________________________________________________________
consensus GGCGCCTTTGTCGACGGTGTGGCACTGAGCGCATTTGGTCCTGAAGATCTTCTCCCCGGC
 
. : . : . : . : . : . :
JMFN040H02+ TTTCACGTCTCCCGGCGGTGCCTCTGCGAACGACGCCATTTCTTTACCTTCTTTGTTTGT
JMFN037D12+ TTTCACGTCTCCCGGCGGTGCCTCTGCGAACGACGCCATTTCTTTACCTTCTTTGTTTGT
JMFN043E15+ TTTCACGTCTCCCGGCGGTGCCTCTGCGAACGACGCCATTTCTTTACCTTCTTTGTTTGT
JMFN038J10+ TTTCACGTCTCCCGGCGGTGCCTCTGCGAACGACGCCATTTCTTTACCTTCTTTGTTTGT
JMFN041J19+ TTTCACGTCTCCCGGCGGTGCCTCTGCGAACGACGCCATTTCTCTACCTTCTTCGTTTGT
rJMFF024D18- TTTCACGTCTCCCGGCGGTGCCTCTGCGAACGACGCCATTTCTTTACCTTCTTTGTTTGT
JMFF016P23+ TTTCACGTCTCCCGGCGGTGCCTCTGCGAACGACGCCATTTCTTTACCTTCTTTGTTTGT
JMFF024D18+ TTTCACGTCTCCCGGCGGTGCCTCTGCGAACGACGCCATTTCTTTACCTTCTTTGTTTGT
rJMFF016P23- TTTCACGTCTCCCGGCGGTGCCTCTGCGAACGACGCCATTTCTTTACCTTCTTTGTTTGT
                      ____________________________________________________________
consensus TTTCACGTCTCCCGGCGGTGCCTCTGCGAACGACGCCATTTCTTTACCTTCTTTGTTTGT
 
. : . : . : . : . : . :
JMFN040H02+ TTGTTATTTTTGGGTGTTTCTAGAAGGAA
JMFN037D12+ TGGTTATTTTTGGGTGTTTCTAGA
JMFN043E15+ TTGTTATTTTTGGGTGTTTCTAGAA
JMFN038J10+ TTGTTATTTTTGGGTGTTTCTAGAAGGAATAGTACAA
JMFN041J19+ TTGTTATTTTTGGGTGTTTCTAGAAGGAATAGTACAACGGGGAAAGGA
rJMFF024D18- TTGTTATTTTTGGGTGTTTCTAGAAGGAATAGTACAACGGGGAAAGGAGGTGTGGAACT
JMFF016P23+ TTGTTATTTTTGGGTGTTTCTAGAAGGAATAGTACAACGGGGAAAGGAGGTGTGGAACT
JMFF024D18+ TTGTTATTTTTGGGTGTTTCTAGAAGGAATAGTACAACGGGGAAAGGAGGTGTGGAACT
rJMFF016P23- TTGTTATTTTTGGGTGTTTCTAGAAGGAATAGTACAACGGGGAAAGGAGGTGTGGAACTA
                      ____________________________________________________________
consensus TTGTTATTTTTGGGTGTTTCTAGAAGGAATAGTACAACGGGGAAAGGAGGTGTGGAACTA