clone | seq. | 5'-sequence | 3'-sequence | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
JMFF013C05 | Sequence | 568 | 008539 (11) | gb|AEC10957.1| | 1e-107 | ribosomal petrp-like protein [Camellia sinensis] | 695 | 008539 (11) | ref|XP_011071217.1| | 3e-109 | PREDICTED: 60S ribosomal protein L17-2 [Sesamum indicum] |
JMFF018D21 | Sequence | 520 | 008539 (11) | gb|AEC10957.1| | 8e-106 | ribosomal petrp-like protein [Camellia sinensis] | 317 | 008539 (11) | gb|ACJ02347.1| | 2e-31 | 60S ribosomal protein L17 [Vernicia fordii] |
JMFS064B06 | Sequence | 519 | 008539 (11) | ref|XP_009337495.1| | 8e-62 | PREDICTED: 60S ribosomal protein L17-1 isoform X1 [Pyrus x bretschneideri] | |||||
JMSF021J07 | Sequence | 692 | 008539 (11) | gb|AEC10957.1| | 3e-109 | ribosomal petrp-like protein [Camellia sinensis] | 744 | 008539 (11) | emb|CDP21557.1| | 6e-109 | unnamed protein product [Coffea canephora] |
JMSF024P05 | Sequence | 685 | 008539 (11) | gb|AEC10957.1| | 3e-109 | ribosomal petrp-like protein [Camellia sinensis] | 714 | 008539 (11) | gb|AEC10957.1| | 4e-109 | ribosomal petrp-like protein [Camellia sinensis] |
JMSF043B13 | Sequence | 476 | 008539 (11) | gb|EYU42099.1| | 2e-107 | hypothetical protein MIMGU_mgv1a013753mg [Erythranthe guttata] | 600 | 008539 (11) | gb|AEC10957.1| | 2e-92 | ribosomal petrp-like protein [Camellia sinensis] |
Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.
SCORE============================================Contig008539============================================ 764 40 ------------------------------------------------------------------------->JMFF013C05 <-----------------------------------------------------------------------------------------rJMFF013C05 52 ---------------------------------------------------------------------------------------->JMSF024P05 <--------------------------------------------------------------------------------------------rJMSF024P05 84 ------------------------------------------------------------->JMSF043B13 <------------------------------------------------------------------------------rJMSF043B13 164 ------------------------------------------------------------------->JMFF018D21 <----------------------------------------rJMFF018D21 178 ----------------------------------------------------------------------------------------->JMSF021J07 <---------------------------------------------------------------------------rJMSF021J07
The following clones don't have the opposite end in this pair.
------------------------------------------------------------------->JMFS064B06-