clone | seq. | 5'-sequence | 3'-sequence | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
JMFF002G10 | Sequence | 569 | 007273 (11) | emb|CDP07428.1| | 4e-47 | unnamed protein product [Coffea canephora] | 732 | 007273 (11) | ref|XP_009610156.1| | 1e-101 | PREDICTED: protein BASIC PENTACYSTEINE6-like [Nicotiana tomentosiformis] ref|XP_ |
JMFF004K17 | Sequence | 444 | 007273 (11) | gb|EYU21873.1| | 1e-32 | hypothetical protein MIMGU_mgv1a0218291mg, partial [Erythranthe guttata] | 786 | 007273 (11) | ref|XP_009610156.1| | 9e-102 | PREDICTED: protein BASIC PENTACYSTEINE6-like [Nicotiana tomentosiformis] ref|XP_ |
JMFF012A13 | Sequence | 467 | 007273 (11) | gb|EYU21873.1| | 4e-37 | hypothetical protein MIMGU_mgv1a0218291mg, partial [Erythranthe guttata] | 681 | 007273 (11) | ref|XP_009610156.1| | 2e-98 | PREDICTED: protein BASIC PENTACYSTEINE6-like [Nicotiana tomentosiformis] ref|XP_ |
JMFF026I22 | Sequence | 629 | 007273 (11) | emb|CDP07428.1| | 9e-52 | unnamed protein product [Coffea canephora] | 745 | 007273 (11) | ref|XP_009610156.1| | 1e-101 | PREDICTED: protein BASIC PENTACYSTEINE6-like [Nicotiana tomentosiformis] ref|XP_ |
JMFF040N22 | Sequence | 518 | 007273 (11) | emb|CDP07428.1| | 9e-47 | unnamed protein product [Coffea canephora] | 716 | 007273 (11) | ref|XP_009610156.1| | 5e-101 | PREDICTED: protein BASIC PENTACYSTEINE6-like [Nicotiana tomentosiformis] ref|XP_ |
JMFS024F04 | Sequence | 627 | 007273 (11) | emb|CDP07428.1| | 2e-57 | unnamed protein product [Coffea canephora] |
Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.
SCORE============================================Contig007273============================================1428 108 -------------------------->JMFF004K17 <------------------------------------------------------rJMFF004K17 108 ---------------------------->JMFF012A13 <-----------------------------------------------rJMFF012A13 108 ------------------------------->JMFF040N22 <-------------------------------------------------rJMFF040N22 172 --------------------------------------->JMFF002G10 <------------------------------------rJMFF002G10 195 ------------------------------------------->JMFF026I22 <-------------------------------------rJMFF026I22
The following clones don't have the opposite end in this pair.
---------------------------------------->JMFS024F04-