clone | seq. | 5'-sequence | 3'-sequence | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
JMFN012M02 | Sequence | 636 | 009943 (9) | ref|XP_004917040.1| | 2e-77 | PREDICTED: histone H3.2-like isoform X2 [Xenopus (Silurana) tropicalis] | |||||
JMSF007L03 | Sequence | 365 | 009943 (9) | ref|XP_001061048.2| | 2e-53 | PREDICTED: histone H3.1 [Rattus norvegicus] ref|XP_003751756.2| PREDICTED: histo | 609 | 009943 (9) | ref|XP_004917040.1| | 8e-78 | PREDICTED: histone H3.2-like isoform X2 [Xenopus (Silurana) tropicalis] |
JMSF016C07 | Sequence | 407 | 009943 (9) | ref|XP_004917040.1| | 2e-60 | PREDICTED: histone H3.2-like isoform X2 [Xenopus (Silurana) tropicalis] | 558 | 009943 (9) | ref|XP_004917040.1| | 4e-78 | PREDICTED: histone H3.2-like isoform X2 [Xenopus (Silurana) tropicalis] |
JMSF017H12 | Sequence | 496 | 009943 (9) | ref|XP_008669425.1| | 6e-74 | PREDICTED: histone H3.2-like [Zea mays] tpg|DAA37858.1| TPA: histone H3.2 [Zea m | 647 | 009943 (9) | ref|XP_007014942.1| | 3e-78 | Histone superfamily protein [Theobroma cacao] gb|EOY32561.1| Histone superfamily |
JMSF052C02 | Sequence | 657 | 009943 (9) | ref|XP_004917040.1| | 1e-77 | PREDICTED: histone H3.2-like isoform X2 [Xenopus (Silurana) tropicalis] | 630 | 009943 (9) | ref|XP_004917040.1| | 1e-77 | PREDICTED: histone H3.2-like isoform X2 [Xenopus (Silurana) tropicalis] |
Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.
SCORE============================================Contig009943============================================ 695 48 ---------------------------------------------------------------------->JMSF017H12 <--------------------------------------------------------------------------------------------rJMSF017H12 86 --------------------------------------------------->JMSF007L03 <---------------------------------------------------------------------------------------rJMSF007L03 138 --------------------------------------------------------->JMSF016C07 <-------------------------------------------------------------------------------rJMSF016C07 220 ---------------------------------------------------------------------------------------------->JMSF052C02 <-------------------------------------------------------------------rJMSF052C02
The following clones don't have the opposite end in this pair.
----------------------------------------------------------------->JMFN012M02-