| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN012M02 | Sequence | 636 | 009943 (9) | ref|XP_004917040.1| | 2e-77 | PREDICTED: histone H3.2-like isoform X2 [Xenopus (Silurana) tropicalis] | |||||
| JMSF007L03 | Sequence | 365 | 009943 (9) | ref|XP_001061048.2| | 2e-53 | PREDICTED: histone H3.1 [Rattus norvegicus] ref|XP_003751756.2| PREDICTED: histo | 609 | 009943 (9) | ref|XP_004917040.1| | 8e-78 | PREDICTED: histone H3.2-like isoform X2 [Xenopus (Silurana) tropicalis] |
| JMSF016C07 | Sequence | 407 | 009943 (9) | ref|XP_004917040.1| | 2e-60 | PREDICTED: histone H3.2-like isoform X2 [Xenopus (Silurana) tropicalis] | 558 | 009943 (9) | ref|XP_004917040.1| | 4e-78 | PREDICTED: histone H3.2-like isoform X2 [Xenopus (Silurana) tropicalis] |
| JMSF017H12 | Sequence | 496 | 009943 (9) | ref|XP_008669425.1| | 6e-74 | PREDICTED: histone H3.2-like [Zea mays] tpg|DAA37858.1| TPA: histone H3.2 [Zea m | 647 | 009943 (9) | ref|XP_007014942.1| | 3e-78 | Histone superfamily protein [Theobroma cacao] gb|EOY32561.1| Histone superfamily |
| JMSF052C02 | Sequence | 657 | 009943 (9) | ref|XP_004917040.1| | 1e-77 | PREDICTED: histone H3.2-like isoform X2 [Xenopus (Silurana) tropicalis] | 630 | 009943 (9) | ref|XP_004917040.1| | 1e-77 | PREDICTED: histone H3.2-like isoform X2 [Xenopus (Silurana) tropicalis] |
This contig is upended
. : . : . : . : . : . :
JMSF052C02+ ACAGAAATCAGTAGTCATATTTCATAGATTTGATG
____________________________________________________________
consensus ACAGAAATCAGTAGTCATATTTCATAGATTTGATG
. : . : . : . : . : . :
JMSF052C02+ TGACAAACCACAGATTCGAGAAATCAAAAGTCATATTTCATAGAAAGAGGTGAGATTAGA
rJMSF007L03- ATTCGAGAAATCAAAAGTCATATTTCATAGAAAGAGGTGAGATTAGA
rJMSF017H12- ATTCGAGAAATCAAAAGTCATATTTCATAGAAAGAGGTGAGATTAGA
____________________________________________________________
consensus TGACAAACCACAGATTCGAGAAATCAAAAGTCATATTTCATAGAAAGAGGTGAGATTAGA
. : . : . : . : . : . :
JMSF052C02+ TATAAGTGCTCTGAACTAAAACAATTTCCCGGCCTCTGCACATCTAGGTTTCGGCCGCTA
rJMSF007L03- TATAAGTGCTCTGAACTAAAACAATTTCCCGGCCTCTGCACATCTAGGTTTCGGCCGCTA
rJMSF016C07- AGTGCTCTGAACTAAAACAATTTCCCGGCCTCTGCACATCTAGGTTTCGGCCGCTA
rJMSF017H12- TATAAGTGCTCTGAACTAAAACAATTTCCCGGCCTCTGCACATCTAGGTTTCGGCCGCTA
____________________________________________________________
consensus TATAAGTGCTCTGAACTAAAACAATTTCCCGGCCTCTGCACATCTAGGTTTCGGCCGCTA
. : . : . : . : . : . :
JMSF052C02+ GAATATCTACGATGTTGCATTTATGCTCTCTCTCCCCTGATTCTCCTCGCGAGCTGGATG
rJMSF052C02- CTCTCTCCCCTGATTCTCCTCGCGAGCTGGATG
JMFN012M02+ CTCTCTCCCCTGATTCTCCTCGCGAGCTGGATG
rJMSF007L03- GAATATCTACGATGTTGCATTTATGCTCTCTCTCCCCTGATTCTCCTCGCGAGCTGGATG
rJMSF016C07- GAATATCTACGATGTTGCATTTATGCTCTCTCTCCCCTGATTCTCCTCGCGAGCTGGATG
JMSF017H12+ CCTCGCGAGCTGGATG
rJMSF017H12- GAATATCTACGATGTTGCATTTATGCTCTCTCTCCCCTGATTCTCCTCGCGAGCTGGATG
____________________________________________________________
consensus GAATATCTACGATGTTGCATTTATGCTCTCTCTCCCCTGATTCTCCTCGCGAGCTGGATG
. : . : . : . : . : . :
JMSF052C02+ TCTTTCGGCATGATTGTGACTCTCTTAGCGTGAATGGCGCAGAGATTGGTGTCCTCGAAC
rJMSF052C02- TCTTTCGGCATGATTGTGACTCTCTTAGCGTGAATGGCGCAGAGATTGGTGTCCTCGAAC
JMFN012M02+ TCTTTCGGCATGATTGTGACTCTCTTAGCGTGAATGGCGCAGAGATTGGTGTCCTCGAAC
rJMSF007L03- TCTTTCGGCATGATTGTGACTCTCTTAGCGTGAATGGCGCAGAGATTGGTGTCCTCGAAC
rJMSF016C07- TCTTTCGGCATGATTGTGACTCTCTTAGCGTGAATGGCGCAGAGATTGGTGTCCTCGAAC
JMSF017H12+ TCTTTCGGCATGATTGTGACTCTCTTAGCGTGAATGGCGCAGAGATTGGTGTCCTCGAAC
JMSF016C07+ GGCGCAGAGATTGGTGTCCTCGAAC
rJMSF017H12- TCTTTCGGCATGATTGTGACTCTCTTAGCGTGAATGGCGCAGAGATTGGTGTCCTCGAAC
____________________________________________________________
consensus TCTTTCGGCATGATTGTGACTCTCTTAGCGTGAATGGCGCAGAGATTGGTGTCCTCGAAC
. : . : . : . : . : . :
JMSF052C02+ AGTCCGACAAGGTAGGCCTCAGCAGCCTCCTGAAGCGCGGCCACGGCGGAGCTTTGGAAG
rJMSF052C02- AGTCCGACAAGGTAGGCCTCAGCAGCCTCCTGAAGCGCGGCCACGGCGGAGCTTTGGAAG
JMFN012M02+ AGTCCGACAAGGTAGGCCTCAGCAGCCTCCTGAAGCGCGGCCACGGCGGAGCTTTGGAAG
JMSF007L03+ TCAGCAGCNTCCTGAAGCGCGGCCACGGCGGAGCTTTGGAAG
rJMSF007L03- AGTCCGACAAGGTAGGCCTCAGCAGCCTCCTGAAGCGCGGCCACGGCGGAGCTTTGGAAG
rJMSF016C07- AGTCCGACAAGGTAGGCCTCAGCAGCCTCCTGAAGCGCGGCCACGGCGGAGCTTTGGAAG
JMSF017H12+ AGTCCGACAAGGTAGGCCTCAGCAGCCTCCTGAAGCGCGGCCACGGCGGAGCTTTGGAAG
JMSF016C07+ AGTCCGACAAGGTAGGCCTCAGCAGCCTCCTGAAGCGCGGCCACGGCGGAGCTTTGGAAG
rJMSF017H12- AGTCCGACAAGGTAGGCCTCAGCAGCCTCCTGAAGCGCGGCCACGGCGGAGCTTTGGAAG
____________________________________________________________
consensus AGTCCGACAAGGTAGGCCTCAGCAGCCTCCTGAAGCGCGGCCACGGCGGAGCTTTGGAAG
. : . : . : . : . : . :
JMSF052C02+ CGGAGATCGGTCTTGAAGTCCTGAGCGATCTCACGAACCAGGCGCTGGAACGGGAGCTTA
rJMSF052C02- CGGAGATCGGTCTTGAAGTCCTGAGCGATCTCACGAACCAGGCGCTGGAACGGGAGCTTA
JMFN012M02+ CGGAGATCGGTCTTGAAGTCCTGAGCGATCTCACGAACCAGGCGCTGGAACGGGAGCTTA
JMSF007L03+ CGGAGATCGGTCTTGAAGTCCTGAGCGATCTCACGAACCAGGCGCTGGAACGGGAGCTTA
rJMSF007L03- CGGAGATCGGTCTTGAAGTCCTGAGCGATCTCACGAACCAGGCGCTGGAACGGGAGCTTA
rJMSF016C07- CGGAGATCGGTCTTGAAGTCCTGAGCGATCTCACGAACCAGGCGCTGGAACGGGAGCTTA
JMSF017H12+ CGGAGATCGGTCTTGAAGTCCTGAGCGATCTCACGAACCAGGCGCTGGAACGGGAGCTTA
JMSF016C07+ CGGAGATCGGTCTTGAAGTCCTGAGCGATCTCACGAACCAGGCGCTGGAACGGGAGCTTA
rJMSF017H12- CGGAGATCGGTCTTGAAGTCCTGAGCGATCTCACGAACCAGGCGCTGGAACGGGAGCTTA
____________________________________________________________
consensus CGGAGATCGGTCTTGAAGTCCTGAGCGATCTCACGAACCAGGCGCTGGAACGGGAGCTTA
. : . : . : . : . : . :
JMSF052C02+ CGGATCAGGAGCTCGGTGGACTTCTGGTACTTTCGGATCTCACGGAGAGCCACGGTTCCT
rJMSF052C02- CGGATCAGGAGCTCGGTGGACTTCTGGTACTTTCGGATCTCACGGAGAGCCACGGTTCCT
JMFN012M02+ CGGATCAGGAGCTCGGTGGACTTCTGGTACTTTCGGATCTCACGGAGAGCCACGGTTCCT
JMSF007L03+ CGGATCAGGAGCTCGGTGGACTTCTGGTACTTTCGGATCTCACGGAGAGCCACGGTTCCT
rJMSF007L03- CGGATCAGGAGCTCGGTGGACTTCTGGTACTTTCGGATCTCACGGAGAGCCACGGTTCCT
rJMSF016C07- CGGATCAGGAGCTCGGTGGACTTCTGGTACTTTCGGATCTCACGGAGAGCCACGGTTCCT
JMSF017H12+ CGGATCAGGAGCTCGGTGGACTTCTGGTACTTTCGGATCTCACGGAGAGCCACGGTTCCT
JMSF016C07+ CGGATCAGGAGCTCGGTGGACTTCTGGTACTTTCGGATCTCACGGAGAGCCACGGTTCCT
rJMSF017H12- CGGATCAGGAGCTCGGTGGACTTCTGGTACTTTCGGATCTCACGGAGAGCCACGGTTCCT
____________________________________________________________
consensus CGGATCAGGAGCTCGGTGGACTTCTGGTACTTTCGGATCTCACGGAGAGCCACGGTTCCT
. : . : . : . : . : . :
JMSF052C02+ GGCCTGAAACGATGAGGCTTCTTCACACCGCCGGTGGCCGGAGCCGACTTCCTAGCAGCC
rJMSF052C02- GGCCTGAAACGATGAGGCTTCTTCACACCGCCGGTGGCCGGAGCCGACTTCCTAGCAGCC
JMFN012M02+ GGCCTGAAACGATGAGGCTTCTTCACACCGCCGGTGGCCGGAGCCGACTTCCTAGCAGCC
JMSF007L03+ GGCCTGAAACGATGAGGCTTCTTCACACCGCCGGTGGCCGGAGCCGACTTCCTAGCAGCC
rJMSF007L03- GGCCTGAAACGATGAGGCTTCTTCACACCGCCGGTGGCCGGAGCCGACTTCCTAGCAGCC
rJMSF016C07- GGCCTGAAACGATGAGGCTTCTTCACACCGCCGGTGGCCGGAGCCGACTTCCTAGCAGCC
JMSF017H12+ GGCCTGAAACGATGAGGCTTCTTCACACCGCCGGTGGCCGGAGCCGACTTCCTAGCAGCC
JMSF016C07+ GGCCTGAAACGATGAGGCTTCTTCACACCGCCGGTGGCCGGAGCCGACTTCCTAGCAGCC
rJMSF017H12- GGCCTGAAACGATGAGGCTTCTTCACACCGCCGGTGGCCGGAGCCGACTTCCTAGCAGCC
____________________________________________________________
consensus GGCCTGAAACGATGAGGCTTCTTCACACCGCCGGTGGCCGGAGCCGACTTCCTAGCAGCC
. : . : . : . : . : . :
JMSF052C02+ TTAGTGGCTAGCTGCTTCCTTGGCGCCTTGCCTCCGGTGGACTTGCGGGCGGTTTGCTTC
rJMSF052C02- TTAGTGGCTAGCTGCTTCCTTGGCGCCTTGCCTCCGGTGGACTTGCGGGCGGTTTGCTTC
JMFN012M02+ TTAGTGGCTAGCTGCTTCCTTGGCGCCTTGCCTCCGGTGGACTTGCGGGCGGTTTGCTTC
JMSF007L03+ TTAGTGGCTAGCTGCTTCCTTGGCGCCTTGCCTCCGGTGGACTTGCGGGCGGTTTGCTTC
rJMSF007L03- TTAGTGGCTAGCTGCTTCCTTGGCGCCTTGCCTCCGGTGGACTTGCGGGCGGTTTGCTTC
rJMSF016C07- TTAGTGGCTAGCTGCTTCCTTGGCGCCTTGCCTCCGGTGGACTTGCGGGCGGTTTGCTTC
JMSF017H12+ TTAGTGGCTAGCTGCTTCCTTGGCGCCTTGCCTCCGGTGGACTTGCGGGCGGTTTGCTTC
JMSF016C07+ TTAGTGGCTAGCTGCTTCCTTGGCGCCTTGCCTCCGGTGGACTTGCGGGCGGTTTGCTTC
rJMSF017H12- TTAGTGGCTAGCTGCTTCCTTGGCGCCTTGCCTCCGGTGGACTTGCGGGCGGTTTGCTTC
____________________________________________________________
consensus TTAGTGGCTAGCTGCTTCCTTGGCGCCTTGCCTCCGGTGGACTTGCGGGCGGTTTGCTTC
. : . : . : . : . : . :
JMSF052C02+ GTACGAGCCATTGACAATCTAGGGTTTCTAAAGCTCAAAGGATCTAAACGACTGAAATCA
rJMSF052C02- GTACGAGCCATTGACAATCTAGGGTTTCTAAAGCTCAAAGGATCTAAACGACTGAAATCA
JMFN012M02+ GTACGAGCCATTGACAATCTAGGGTTTCTAAAGCTCAAAGGATCTAAACGACTGAAATCA
JMSF007L03+ GTACGAGCCATTGACAATCTAGGGTTTCTAAAGCTCAAAGGATCTAAACGACTGAAATCA
rJMSF007L03- GTACGAGCCATTGACAATCTAGGGTTTCTAAAGCTCAAAGGATCTAAACGACTGAAATCA
rJMSF016C07- GTACGAGCCATTGACAATCTAGGGTTTCTAAAGCTCAAAGGATCTAAACGACTGAAATCA
JMSF017H12+ GTACGAGCCATTGACAATCTAGGGTTTCTAAAGCTCAAAGGATCTAAACGACTGAAATCA
JMSF016C07+ GTACGAGCCATTGACAATCTAGGGTTTCTAAAGCTCAAAGGATCTAAACGACTGAAATCA
rJMSF017H12- GTACGAGCCATTGACAATCTAGGGTTTCTAAAGCTCAAAGGATCTAAACGACTGAAATCA
____________________________________________________________
consensus GTACGAGCCATTGACAATCTAGGGTTTCTAAAGCTCAAAGGATCTAAACGACTGAAATCA
. : . : . : . : . : . :
JMSF052C02+ GTGAACGAATTCGGACTTGAGC
rJMSF052C02- GTGAACGAATTCGGACTTGAGC
JMFN012M02+ GTG
JMSF007L03+ GTGAACGAATTCGGACTTGAGC
rJMSF007L03- GTGAACGAATTCGGACTTGAGC
rJMSF016C07- GTGAACGAATTCGGACTTGAT
JMSF017H12+ GTGAACGAATTCGGACTTGATGAAATTTTCCGTGAATTTGGGTGCGATTTATAGGAGGGC
JMSF016C07+ GTGAACGAATTCGGACTTGAT
rJMSF017H12- GTGAACGAATTCGGACTTGATGAAATTTTCCGTGAATTTGGGTGCGATTTATAGGAGGGC
____________________________________________________________
consensus GTGAACGAATTCGGACTTGATCAAATTTTCCGTGAATTTGGGTGCGATTTATAGGAGGGC