clone | seq. | 5'-sequence | 3'-sequence | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
JMFF025C02 | Sequence | 507 | 001487 (12) | ref|XP_008800685.1| | 2e-72 | PREDICTED: 40S ribosomal protein S11-like [Phoenix dactylifera] | 672 | 001487 (12) | ref|XP_009605477.1| | 4e-78 | PREDICTED: 40S ribosomal protein S11-like [Nicotiana tomentosiformis] ref|XP_009 |
JMFN003I20 | Sequence | 575 | 001487 (12) | ref|XP_009605477.1| | 1e-88 | PREDICTED: 40S ribosomal protein S11-like [Nicotiana tomentosiformis] ref|XP_009 | |||||
JMFN010H07 | Sequence | 626 | 001487 (12) | ref|XP_009605477.1| | 3e-94 | PREDICTED: 40S ribosomal protein S11-like [Nicotiana tomentosiformis] ref|XP_009 | |||||
JMFN011H11 | Sequence | 530 | 001487 (12) | ref|XP_002325170.1| | 2e-80 | 40S ribosomal protein S11-2 [Populus trichocarpa] gb|EEF03735.1| 40S ribosomal p | |||||
JMFN030P15 | Sequence | 638 | 001487 (12) | ref|XP_009605477.1| | 3e-94 | PREDICTED: 40S ribosomal protein S11-like [Nicotiana tomentosiformis] ref|XP_009 | |||||
JMFN038I17 | Sequence | 599 | 001487 (12) | ref|XP_009605477.1| | 2e-94 | PREDICTED: 40S ribosomal protein S11-like [Nicotiana tomentosiformis] ref|XP_009 | |||||
JMSF048D05 | Sequence | 646 | 001487 (12) | ref|XP_009605477.1| | 4e-94 | PREDICTED: 40S ribosomal protein S11-like [Nicotiana tomentosiformis] ref|XP_009 | 595 | 001487 (12) | ref|XP_009605477.1| | 2e-94 | PREDICTED: 40S ribosomal protein S11-like [Nicotiana tomentosiformis] ref|XP_009 |
JMSF049D05 | Sequence | 587 | 001487 (12) | ref|XP_009605477.1| | 2e-94 | PREDICTED: 40S ribosomal protein S11-like [Nicotiana tomentosiformis] ref|XP_009 | |||||
JMSF052P01 | Sequence | 688 | 001487 (12) | ref|XP_009605477.1| | 8e-94 | PREDICTED: 40S ribosomal protein S11-like [Nicotiana tomentosiformis] ref|XP_009 | 686 | 001487 (12) | ref|XP_009605477.1| | 7e-94 | PREDICTED: 40S ribosomal protein S11-like [Nicotiana tomentosiformis] ref|XP_009 |
Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.
SCORE============================================Contig001487============================================ 692 19 ------------------------------------------------------------------------>JMFF025C02 <----------------------------------------------------------------------------------------------rJMFF025C02 19 ------------------------------------------------------------------------------------------------>JMSF052P01 <------------------------------------------------------------------------------------------------rJMSF052P01 102 ------------------------------------------------------------------------------------------->JMSF048D05 <------------------------------------------------------------------------------------rJMSF048D05
The following clones don't have the opposite end in this pair.
---------------------------------------------------------------------------------->JMFN003I20- <------------------------------------------------------------------------------------rJMSF049D05- -------------------------------------------------------------------------------------->JMFN038I17- ------------------------------------------------------------------------------------------->JMFN030P15- ----------------------------------------------------------------------------------------->JMFN010H07- ---------------------------------------------------------------------------->JMFN011H11-