Contig 001487:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF025C02Sequence507001487 (12)ref|XP_008800685.1|2e-72PREDICTED: 40S ribosomal protein S11-like [Phoenix dactylifera]672001487 (12)ref|XP_009605477.1|4e-78PREDICTED: 40S ribosomal protein S11-like [Nicotiana tomentosiformis] ref|XP_009
JMFN003I20Sequence575001487 (12)ref|XP_009605477.1|1e-88PREDICTED: 40S ribosomal protein S11-like [Nicotiana tomentosiformis] ref|XP_009
JMFN010H07Sequence626001487 (12)ref|XP_009605477.1|3e-94PREDICTED: 40S ribosomal protein S11-like [Nicotiana tomentosiformis] ref|XP_009
JMFN011H11Sequence530001487 (12)ref|XP_002325170.1|2e-8040S ribosomal protein S11-2 [Populus trichocarpa] gb|EEF03735.1| 40S ribosomal p
JMFN030P15Sequence638001487 (12)ref|XP_009605477.1|3e-94PREDICTED: 40S ribosomal protein S11-like [Nicotiana tomentosiformis] ref|XP_009
JMFN038I17Sequence599001487 (12)ref|XP_009605477.1|2e-94PREDICTED: 40S ribosomal protein S11-like [Nicotiana tomentosiformis] ref|XP_009
JMSF048D05Sequence646001487 (12)ref|XP_009605477.1|4e-94PREDICTED: 40S ribosomal protein S11-like [Nicotiana tomentosiformis] ref|XP_009595001487 (12)ref|XP_009605477.1|2e-94PREDICTED: 40S ribosomal protein S11-like [Nicotiana tomentosiformis] ref|XP_009
JMSF049D05Sequence587001487 (12)ref|XP_009605477.1|2e-94PREDICTED: 40S ribosomal protein S11-like [Nicotiana tomentosiformis] ref|XP_009
JMSF052P01Sequence688001487 (12)ref|XP_009605477.1|8e-94PREDICTED: 40S ribosomal protein S11-like [Nicotiana tomentosiformis] ref|XP_009686001487 (12)ref|XP_009605477.1|7e-94PREDICTED: 40S ribosomal protein S11-like [Nicotiana tomentosiformis] ref|XP_009

Alignment

This contig is upended


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JMFN011H11+                                       CAGTTAAGCAATTTGTAAATTCAACGAACACA
rJMFF025C02-                                                       AATTCAACGAACACA
JMFN030P15+                                                        AATTCAACGAACACA
rJMSF052P01-                                                       AATTCAACGAACACA
JMSF052P01+                                                        AATTCAACGAACACA
                      ____________________________________________________________
consensus                                         CAGTTAAGCAATTTGTAAATTCAACGAACACA
 
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JMFN011H11+           AAATCAATTGCAAGTAGTATTATAGATAAGATTCCAATGAAAT-AAAAAAAAGTGTTCAA
rJMFF025C02-          AAATCAATTGCAAGTAGTATTATAGATAAGATTCCAATGAAAT-AAAAAAAAGTGTTCAA
JMFN030P15+           AAATCAATTGCAAGTAGTATTATAGATAAGATTCCAATGAAATAAAAAAAAAGTGTTCAA
JMFN038I17+                              TTATAGATAAGATTCCAATGAAAT-AAAAAAAAGTGTTCAA
JMFN010H07+                   TGCAAGTAGTATTATAGATAAGATTCCAATGAAAT-AAAAAAAAGTGTTCAA
rJMSF052P01-          AAATCAATTGCAAGTAGTATTATAGATAAGATTCCAATGAAAT-AAAAAAAAGTGTTCAA
JMFN003I20+               CAATTGCAAGTAGTATTATAGATAAGATTCCAATGAAAT-AAAAAAAAGTGTTCAA
JMSF052P01+           AAATCAATTGCAAGTAGTATTATAGATAAGATTCCAATGAAAT-AAAAAAAAGTGTTCAA
JMSF048D05+                                 TAGATAAGATTCCAATGAAAT-AAAAAAAAGTGTTCAA
                      ____________________________________________________________
consensus             AAATCAATTGCAAGTAGTATTATAGATAAGATTCCAATGAAAT-AAAAAAAAGTGTTCAA
 
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JMFN011H11+           CGAAAACAATAAAAACAGCTCTAACACAAACTTTTTAACAAAAAGGGTCACATCGGCGTT
rJMFF025C02-          CGAAAACAATAAAAACAGCTCTAACACAAACTTTTTAACAAAAAGGGTCACATCGGCGTT
JMFN030P15+           CGAAAACAATAAAAACAGCTCTAACACAAACTTTTTAACAAAAAGGGTCACATCGGCGTT
JMFN038I17+           CGAAAACAATAAAAACAGCTCTAACACAAAC-TTTTAACAAAAAGGGTCACATCGGCGTT
JMFN010H07+           CGAAAACAATAAAAACAGCTCTAACACAAACTTTTTAACAAAAAGGGTCACATCGGCGTT
rJMSF052P01-          CGAAAACAATAAAAACAGCTCTAACACAAACTTTTTAACAAAAAGGGTCACATCGGCGTT
JMFN003I20+           CGAAAACAATAAAAACAGCTCTAACACAAACTTTTTAACAAAAAGGGTCACATCGGCGTT
JMSF052P01+           CGAAAACAATAAAAACAGCTCTAACACAAACTTTTTAACAAAAAGGGTCACATCGGCGTT
JMSF048D05+           CGAAAACAATAAAAACAGCTCTAACACAAACTTTTTAACAAAAAGGGTCACATCGGCGTT
rJMSF048D05-                  ATAAAAACAGCTCTAACACAAACTTTTTAACAAAAAGGGTCACATCGGCGTT
rJMSF049D05-                       AACAGCTCTAACACAAACTTTTTAACAAAAAGGGTCACATCGGCGTT
                      ____________________________________________________________
consensus             CGAAAACAATAAAAACAGCTCTAACACAAACTTTTTAACAAAAAGGGTCACATCGGCGTT
 
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JMFN011H11+           CACATTCCGGTGAATGCCTTCTTCCCACCACTAGCAGAACCAGCAGGGATCACCTTCAAC
rJMFF025C02-          CACATTCCGGTGAATGCCTTCTTCCCACCACTAGCAGAACCAGCAGGGATCACCTTCAAC
JMFN030P15+           CACATTCCGGTGAATGCCTTCTTCCCACCACTAGCAGAACCAGCAGGGATCACCTTCAAC
JMFN038I17+           CACATTCCGGTGAATGCCTTCTTCCCACCACTAGCAGAACCAGCAGGGATCACCTTCAAC
JMFN010H07+           CACATTCCGGTGAATGCCTTCTTCCCACCACTAGCAGAACCAGCAGGGATCACCTTCAAC
rJMSF052P01-          CACATTCCGGTGAATGCCTTCTTCCCACCACTAGCAGAACCAGCAGGGATCACCTTCAAC
JMFN003I20+           CACATTCCGGTGAATGCCTTCTTCCCACCACTAGCAGAACCAGCAGGGATCACCTTCAAC
JMFF025C02+                                         CTAGCAGAACCAGCAGGGATCACCTTCAAC
JMSF052P01+           CACATTCCGGTGAATGCCTTCTTCCCACCACTAGCAGAACCAGCAGGGATCACCTTCAAC
JMSF048D05+           CACATTCCGGTGAATGCCTTCTTCCCACCACTAGCAGAACCAGCAGGGATCACCTTCAAC
rJMSF048D05-          CACATTCCGGTGAATGCCTTCTTCCCACCACTAGCAGAACCAGCAGGGATCACCTTCAAC
rJMSF049D05-          CACATTCCGGTGAATGCCTTCTTCCCACCACTAGCAGAACCAGCAGGGATCACCTTCAAC
                      ____________________________________________________________
consensus             CACATTCCGGTGAATGCCTTCTTCCCACCACTAGCAGAACCAGCAGGGATCACCTTCAAC
 
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JMFN011H11+           ACGTTGAATCGAACAGTTTTGGACAATGGCCTGCACTGTCCAATAATTACGTGATCCCCT
rJMFF025C02-          ACGTTGAATCGAACAGTTTTGGACAATGGCCTGCACTGTCCAATAATTACGTGATCCCCT
JMFN030P15+           ACGTTGAATCGAACAGTTTTGGACAATGGCCTGCACTGTCCAATAATTACGTGATCCCCT
JMFN038I17+           ACGTTGAATCGAACAGTTTTGGACAATGGCCTGCACTGTCCAATAATTACGTGATCCCCT
JMFN010H07+           ACGTTGAATCGAACAGTTTTGGACAATGGCCTGCACTGTCCAATAATTACGTGATCCCCT
rJMSF052P01-          ACGTTGAATCGAACAGTTTTGGACAATGGCCTGCACTGTCCAATAATTACGTGATCCCCT
JMFN003I20+           ACGTTGAATCGAACAGTTTTGGACAATGGCCTGCACTGTCCAATAATTACGTGATCCCCT
JMFF025C02+           ACGTTGAATCGAACAGTTTTGGACAATGGCCTGCACTGTCCAATAATTACGTGATCCCCT
JMSF052P01+           ACGTTGAATCGAACAGTTTTGGACAATGGCCTGCACTGTCCAATAATTACGTGATCCCCT
JMSF048D05+           ACGTTGAATCGAACAGTTTTGGACAATGGCCTGCACTGTCCAATAATTACGTGATCCCCT
rJMSF048D05-          ACGTTGAATCGAACAGTTTTGGACAATGGCCTGCACTGTCCAATAATTACGTGATCCCCT
rJMSF049D05-          ACGTTGAATCGAACAGTTTTGGACAATGGCCTGCACTGTCCAATAATTACGTGATCCCCT
                      ____________________________________________________________
consensus             ACGTTGAATCGAACAGTTTTGGACAATGGCCTGCACTGTCCAATAATTACGTGATCCCCT
 
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JMFN011H11+           TCCTTGACACGGAAGCATGGTGAAACGTGAGCAGCAATATTTGAGTGGCGCTTCTCATAC
rJMFF025C02-          TCCTTGACACGGAAGCATGGTGAAACGTGAGCAGCAATATTTGAGTGGCGCTTCTCATAC
JMFN030P15+           TCCTTGACACGGAAGCATGGTGAAACGTGAGCAGCAATATTTGAGTGGCGCTTCTCATAC
JMFN038I17+           TCCTTGACACGGAAGCATGGTGAAACGTGAGCAGCAATATTTGAGTGGCGCTTCTCATAC
JMFN010H07+           TCCTTGACACGGAAGCATGGTGAAACGTGAGCAGCAATATTTGAGTGGCGCTTCTCATAC
rJMSF052P01-          TCCTTGACACGGAAGCATGGTGAAACGTGAGCAGCAATATTTGAGTGGCGCTTCTCATAC
JMFN003I20+           TCCTTGACACGGAAGCATGGTGAAACGTGAGCAGCAATATTTGAGTGGCGCTTCTCATAC
JMFF025C02+           TCCTTGACACGGAAGCATGGTGAAACGTGAGCAGCAATATTTGAGTGGCGCTTCTCATAC
JMSF052P01+           TCCTTGACACGGAAGCATGGTGAAACGTGAGCAGCAATATTTGAGTGGCGCTTCTCATAC
JMSF048D05+           TCCTTGACACGGAAGCATGGTGAAACGTGAGCAGCAATATTTGAGTGGCGCTTCTCATAC
rJMSF048D05-          TCCTTGACACGGAAGCATGGTGAAACGTGAGCAGCAATATTTGAGTGGCGCTTCTCATAC
rJMSF049D05-          TCCTTGACACGGAAGCATGGTGAAACGTGAGCAGCAATATTTGAGTGGCGCTTCTCATAC
                      ____________________________________________________________
consensus             TCCTTGACACGGAAGCATGGTGAAACGTGAGCAGCAATATTTGAGTGGCGCTTCTCATAC
 
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JMFN011H11+           CTTTGATACTTCTTAACAAAGTGAAGGTAGTTACGACGAACAATAATGGTTCGGGTCATC
rJMFF025C02-          CTTTGATACTTCTTAACAAAGTGAAGGTAGTTACGACGAACAATAATGGTTCGGGTCATC
JMFN030P15+           CTTTGATACTTCTTAACAAAGTGAAGGTAGTTACGACGAACAATAATGGTTCGGGTCATC
JMFN038I17+           CTTTGATACTTCTTAACAAAGTGAAGGTAGTTACGACGAACAATAATGGTTCGGGTCATC
JMFN010H07+           CTTTGATACTTCTTAACAAAGTGAAGGTAGTTACGACGAACAATAATGGTTCGGGTCATC
rJMSF052P01-          CTTTGATACTTCTTAACAAAGTGAAGGTAGTTACGACGAACAATAATGGTTCGGGTCATC
JMFN003I20+           CTTTGATACTTCTTAACAAAGTGAAGGTAGTTACGACGAACAATAATGGTTCGGGTCATC
JMFF025C02+           CTTTGATACTTCTTAACAAAGTGAAGGTAGTTACGACGAACAATAATGGTTCGGGTCATC
JMSF052P01+           CTTTGATACTTCTTAACAAAGTGAAGGTAGTTACGACGAACAATAATGGTTCGGGTCATC
JMSF048D05+           CTTTGATACTTCTTAACAAAGTGAAGGTAGTTACGACGAACAATAATGGTTCGGGTCATC
rJMSF048D05-          CTTTGATACTTCTTAACAAAGTGAAGGTAGTTACGACGAACAATAATGGTTCGGGTCATC
rJMSF049D05-          CTTTGATACTTCTTAACAAAGTGAAGGTAGTTACGACGAACAATAATGGTTCGGGTCATC
                      ____________________________________________________________
consensus             CTTTGATACTTCTTAACAAAGTGAAGGTAGTTACGACGAACAATAATGGTTCGGGTCATC
 
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JMFN011H11+           TTTGCACTGTGGCAAGTTCCGGCAAGGATACGACCTCTGATAGAAACAGTACCAGCAAAG
rJMFF025C02-          TTTGCACTGTGGCAAGTTCCGGCAAGGATACGACCTCTGATAGAAACAGTACCAGCAAAG
JMFN030P15+           TTTGCACTGTGGCAAGTTCCGGCAAGGATACGACCTCTGATAGAAACAGTACCAGCAAAG
JMFN038I17+           TTTGCACTGTGGCAAGTTCCGGCAAGGATACGACCTCTGATAGAAACAGTACCAGCAAAG
JMFN010H07+           TTTGCACTGTGGCAAGTTCCGGCAAGGATACGACCTCTGATAGAAACAGTACCAGCAAAG
rJMSF052P01-          TTTGCACTGTGGCAAGTTCCGGCAAGGATACGACCTCTGATAGAAACAGTACCAGCAAAG
JMFN003I20+           TTTGCACTGTGGCAAGTTCCGGCAAGGATACGACCTCTGATAGAAACAGTACCAGCAAAG
JMFF025C02+           TTTGCACTGTGGCAAGTTCCGGCAAGGATACGACCTCTGATAGAAACAGTACCAGCAAAG
JMSF052P01+           TTTGCACTGTGGCAAGTTCCGGCAAGGATACGACCTCTGATAGAAACAGTACCAGCAAAG
JMSF048D05+           TTTGCACTGTGGCAAGTTCCGGCAAGGATACGACCTCTGATAGAAACAGTACCAGCAAAG
rJMSF048D05-          TTTGCACTGTGGCAAGTTCCGGCAAGGATACGACCTCTGATAGAAACAGTACCAGCAAAG
rJMSF049D05-          TTTGCACTGTGGCAAGTTCCGGCAAGGATACGACCTCTGATAGAAACAGTACCAGCAAAG
                      ____________________________________________________________
consensus             TTTGCACTGTGGCAAGTTCCGGCAAGGATACGACCTCTGATAGAAACAGTACCAGCAAAG
 
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JMFN011H11+           GGGCATTTCTTATCAATATATGTTCCTTCAGTGGCCTCACGGGGTGTCTTGAACCCGAGA
rJMFF025C02-          GGGCATTTCTTATCAATATATGTTCCTTCAGTGGCCTCACGGGGTGTCTTGAACCCGAGA
JMFN030P15+           GGGCATTTCTTATCAATATATGTTCCTTCAGTGGCCTCACGGGGTGTCTTGAACCCGAGA
JMFN038I17+           GGGCATTTCTTATCAATATATGTTCCTTCAGTGGCCTCACGGGGTGTCTTGAACCCGAGA
JMFN010H07+           GGGCATTTCTTATCAATATATGTTCCTTCAGTGGCCTCACGGGGTGTCTTGAACCCGAGA
rJMSF052P01-          GGGCATTTCTTATCAATATATGTTCCTTCAGTGGCCTCACGGGGTGTCTTGAACCCGAGA
JMFN003I20+           GGGCATTTCTTATCAATATATGTTCCTTCAGTGGCCTCACGGGGTGTCTTGAACCCGAGA
JMFF025C02+           GGGCATTTCTTATCAATATATGTTCCTTCAGTGGCCTCACGGGGTGTCTTGAACCCGAGA
JMSF052P01+           GGGCATTTCTTATCAATATATGTTCCTTCAGTGGCCTCACGGGGTGTCTTGAACCCGAGA
JMSF048D05+           GGGCATTTCTTATCAATATATGTTCCTTCAGTGGCCTCACGGGGTGTCTTGAACCCGAGA
rJMSF048D05-          GGGCATTTCTTATCAATATATGTTCCTTCAGTGGCCTCACGGGGTGTCTTGAACCCGAGA
rJMSF049D05-          GGGCATTTCTTATCAATATATGTTCCTTCAGTGGCCTCACGGGGTGTCTTGAACCCGAGA
                      ____________________________________________________________
consensus             GGGCATTTCTTATCAATATATGTTCCTTCAGTGGCCTCACGGGGTGTCTTGAACCCGAGA
 
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JMFN011H11+           CCAATGCTCTTCCAATAAC                                         
rJMFF025C02-          CCAATGCTC-TCCAATAACGATTTCCTCCCTTACCGGGCCGCTTTCCCTTACCAGTCTTC
JMFN030P15+           CCAATGCTCTTCCAATAACGATTTCCTCCCTTACCGGGCCGCTTTCCCTTACCAGTCTTC
JMFN038I17+           CCAATGCTCTTCCAATAACGATTTCCTCCCTTACCGGGCCGCTTTCCCTTACCAGTCTTC
JMFN010H07+           CCAATGCTCTTCCAATAACGATTTCCTCCCTTACCGGGCCGCTTTCCCTTACCAGTCTTC
rJMSF052P01-          CCAATGCTCTTCCAATAACGATTTCCTCCCTTACCGGGCCGCTTTCCCTTACCAGTCTTC
JMFN003I20+           CCAATGCTCTTCCAATAACGATTTCCTCCCTTACCGGGCCGCTTTCCCTTACCAGTCTTC
JMFF025C02+           CCAATGCTC-TCCAATAACGATTTCCTCCCTTACCGGGCCGCTTTCCCTTACCAGTCTTC
JMSF052P01+           CCAATGCTCTTCCAATAACGATTTCCTCCCTTACCGGGCCGCTTTCCCTTACCAGTCTTC
JMSF048D05+           CCAATGCTCTTCCAATAACGATTTCCTCCCTTACCGGGCCGCTTTCCCTTACCAGTCTTC
rJMSF048D05-          CCAATGCTCTTCCAATAACGATTTCCTCCCTTACCGGGCCGCTTTCCCTTACCAGTCTTC
rJMSF049D05-          CCAATGCTCTTCCAATAACGATTTCCTCCCTTACCGGGCCGCTTTCCCTTACCAGTCTTC
                      ____________________________________________________________
consensus             CCAATGCTCTTCCAATAACGATTTCCTCCCTTACCGGGCCGCTTTCCCTTACCAGTCTTC
 
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rJMFF025C02-          TTCGAGCTGAGAAAAACTCCTGGCTGCTTCAAGAAAGCCTTCTCCGTCTGCTCTGCCATG
JMFN030P15+           TTCGAGCTGAGAAAAACTCCTGGCTGCTTCAAGAAAGCCTTCTCCGTCTGCTCTGCCATG
JMFN038I17+           TTCGAGCTGAGAAAAACTCCTGGCTGCTTCAAGAAAGCCTTCTCCGTCTGCTCTGCCATG
JMFN010H07+           TTCGAGCTGAGAAAAACTCCTGGCTGCTTCAAGAAAGCCTTCTCCGTCTGCTCTGCCATG
rJMSF052P01-          TTCGAGCTGAGAAAAACTCCTGGCTGCTTCAAGAAAGCCTTCTCCGTCTGCTCTGCCATG
JMFN003I20+           TTCGAGCTGAGAAAAACTCCTGGCTGCTTCAAGAAAGCCT                    
JMFF025C02+           TTCGAGCTGAGAAAAACTCCTGGCTGCTTCAAGAAAGCCTTCTCCGTCTGCTCTGCCATG
JMSF052P01+           TTCGAGCTGAGAAAAACTCCTGGCTGCTTCAAGAAAGCCTTCTCCGTCTGCTCTGCCATG
JMSF048D05+           TTCGAGCTGAGAAAAACTCCTGGCTGCTTCAAGAAAGCCTTCTCCGTCTGCTCTGCCATG
rJMSF048D05-          TTCGAGCTGAGAAAAACTCCTGGCTGCTTCAAGAAAGCCTTCTCCGTCTGCTCTGCCATG
rJMSF049D05-          TTCGAGCTGAGAAAAACTCCTGGCTGCTTCAAGAAAGCCTTCTCCGTCTGCTCTGCCATG
                      ____________________________________________________________
consensus             TTCGAGCTGAGAAAAACTCCTGGCTGCTTCAAGAAAGCCTTCTCCGTCTGCTCTGCCATG
 
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rJMFF025C02-          GTTGGAGGCTCCGAGGTGCTGTGGAAGTGAAATGGAGCAGCTA                 
JMFN030P15+           GTTGGAGGCTCCGAGGTGCTGTG                                     
JMFN038I17+           GTTGGAGGCTCCGAGGTGC                                         
JMFN010H07+           GTTGGAGGCTCCGAGGTGCTGTGGAAGT                                
rJMSF052P01-          GTTGGAGGCTCCGAGGTGCTGTGGAAGTGAAATGGAGCAGCTAAAAGCCTAGGCGTTG  
JMFF025C02+           GTTGGAGGCTCCGAGGTGCTGTGGAAGTGAAATGGAGCAGCTAAAAGCCTAGGCGTTG  
JMSF052P01+           GTTGGAGGCTCCGAGGTGCTGTGGAAGTGAAATGGAGCAGCTAAAAGCCTAGGCGTTG  
JMSF048D05+           GTTGGAGGCTCCGAGGTGCTGTGGAAGTGAAATGGAGCAGCTAAAAGCCTAGGCGTTG  
rJMSF048D05-          GTTGGAGGCTCCGAGGTGCTGTGGAAGTGAAATGGAGCAGCTAAAAGCCTAGGCGTTG  
rJMSF049D05-          GTTGGAGGCTCCGAGGTGCTGTGGAAGTGAAATGGAGCAGCTAAAAGCCTAGGCGTTGCC
                      ____________________________________________________________
consensus             GTTGGAGGCTCCGAGGTGCTGTGGAAGTGAAATGGAGCAGCTAAAAGCCTAGGCGTTGCC