clone | seq. | 5'-sequence | 3'-sequence | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
JMFF019H05 | Sequence | 563 | 002194 (9) | ref|XP_009791843.1| | 5e-90 | PREDICTED: 20 kDa chaperonin, chloroplastic [Nicotiana sylvestris] ref|XP_009791 | 701 | 002194 (9) | ref|XP_007012580.1| | 5e-70 | Chaperonin 20 isoform 1 [Theobroma cacao] ref|XP_007012582.1| Chaperonin 20 isof |
JMFN033A22 | Sequence | 470 | 002194 (9) | ref|XP_009791843.1| | 7e-55 | PREDICTED: 20 kDa chaperonin, chloroplastic [Nicotiana sylvestris] ref|XP_009791 | |||||
JMFN040K16 | Sequence | 624 | 002194 (9) | ref|XP_009791843.1| | 1e-114 | PREDICTED: 20 kDa chaperonin, chloroplastic [Nicotiana sylvestris] ref|XP_009791 | |||||
JMFN042A18 | Sequence | 603 | 002194 (9) | ref|XP_009618950.1| | 6e-78 | PREDICTED: 20 kDa chaperonin, chloroplastic-like [Nicotiana tomentosiformis] | |||||
JMSF018M19 | Sequence | 461 | 002194 (9) | ref|XP_009791843.1| | 8e-51 | PREDICTED: 20 kDa chaperonin, chloroplastic [Nicotiana sylvestris] ref|XP_009791 | 678 | 002194 (9) | ref|XP_009618950.1| | 3e-94 | PREDICTED: 20 kDa chaperonin, chloroplastic-like [Nicotiana tomentosiformis] |
JMSF051M05 | Sequence | 584 | 002194 (9) | ref|XP_009791843.1| | 1e-94 | PREDICTED: 20 kDa chaperonin, chloroplastic [Nicotiana sylvestris] ref|XP_009791 | 679 | 002194 (9) | ref|XP_009618950.1| | 6e-75 | PREDICTED: 20 kDa chaperonin, chloroplastic-like [Nicotiana tomentosiformis] |
Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.
SCORE============================================Contig002194============================================1103 56 ----------------------------------------->JMSF018M19 <-------------------------------------------------------------rJMSF018M19 137 -------------------------------------------->JMFF019H05 <---------------------------------------------------------------rJMFF019H05 180 ----------------------------------------------->JMSF051M05 <-------------------------------------------------------------rJMSF051M05
The following clones don't have the opposite end in this pair.
------------------------------------------------------>JMFN042A18- -------------------------------->JMFN033A22- -------------------------------------------------------->JMFN040K16-