Contig 002194:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF019H05Sequence563002194 (9)ref|XP_009791843.1|5e-90PREDICTED: 20 kDa chaperonin, chloroplastic [Nicotiana sylvestris] ref|XP_009791701002194 (9)ref|XP_007012580.1|5e-70Chaperonin 20 isoform 1 [Theobroma cacao] ref|XP_007012582.1| Chaperonin 20 isof
JMFN033A22Sequence470002194 (9)ref|XP_009791843.1|7e-55PREDICTED: 20 kDa chaperonin, chloroplastic [Nicotiana sylvestris] ref|XP_009791
JMFN040K16Sequence624002194 (9)ref|XP_009791843.1|1e-114PREDICTED: 20 kDa chaperonin, chloroplastic [Nicotiana sylvestris] ref|XP_009791
JMFN042A18Sequence603002194 (9)ref|XP_009618950.1|6e-78PREDICTED: 20 kDa chaperonin, chloroplastic-like [Nicotiana tomentosiformis]
JMSF018M19Sequence461002194 (9)ref|XP_009791843.1|8e-51PREDICTED: 20 kDa chaperonin, chloroplastic [Nicotiana sylvestris] ref|XP_009791678002194 (9)ref|XP_009618950.1|3e-94PREDICTED: 20 kDa chaperonin, chloroplastic-like [Nicotiana tomentosiformis]
JMSF051M05Sequence584002194 (9)ref|XP_009791843.1|1e-94PREDICTED: 20 kDa chaperonin, chloroplastic [Nicotiana sylvestris] ref|XP_009791679002194 (9)ref|XP_009618950.1|6e-75PREDICTED: 20 kDa chaperonin, chloroplastic-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMFN042A18+                                                TAAACAGTAGTAAGTGTGATGAT
rJMFF019H05-                                                            GTGTGATGAT
                      ____________________________________________________________
consensus                                                  TAAACAGTAGTAAGTGTGATGAT
 
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JMFN042A18+           TCACTTATGCCATTGCTTAGTTTCCATGTAACAAAAAGAAGAGAGGAAATTCTATTACAG
rJMFF019H05-          TCACTTATGCCATTGCTTAGTTTCCATGTAACAAAAAGAAGAGAGGAAATTCTATTACAG
rJMSF018M19-                                           AAAAGAAGAGAGGAAATTCTATTACAG
rJMSF051M05-                                           AAAAGAAGAGAGGAAATTCTATTACAG
                      ____________________________________________________________
consensus             TCACTTATGCCATTGCTTAGTTTCCATGTAACAAAAAGAAGAGAGGAAATTCTATTACAG
 
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JMFN042A18+           TTGACACAAGTGTATCACTAAGACTTTGCTAAGGAATATTCTCAAACACGATTTTCCAGT
rJMFF019H05-          TTGACACAAGTGTATCACTAAGACTTTGCTAAGGAATATTCTCAAACACGATTTTCCAGT
rJMSF018M19-          TTGACACAAGTGTATCACTAAGACTTTGCTAAGGAATATTCTCAAACACGATTTTCCAGT
rJMSF051M05-          TTGACACAAGTGTATCACTAAGACTTTGCTAAGGAATATTCTCAAACACGATTTTCCAGT
                      ____________________________________________________________
consensus             TTGACACAAGTGTATCACTAAGACTTTGCTAAGGAATATTCTCAAACACGATTTTCCAGT
 
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JMFN042A18+           TTTCTGAGCCGAAATACACTACAA-TTTTTTTTTTTGGAAAAATAGAAATATTCTGCAGC
rJMFF019H05-          TTTCTGAGCCGAAATACACTACAA-TTTTTTTTTTTGGAAAAATANAAATATTCTGCAGC
rJMSF018M19-          TTTCTGAGCCGAAATACACTACAA-TTTTTTTTTTTGGAAAAATANAAATATTCTGCAGC
rJMSF051M05-          TTTCTGAGCCGAAATACACTACAATTTTTTTTTTTTGGAAAAATANAAATATTCNGCAGC
                      ____________________________________________________________
consensus             TTTCTGAGCCGAAATACACTACAA-TTTTTTTTTTTGGAAAAATAGAAATATTCTGCAGC
 
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JMFN042A18+           AAGGCGACTATGAGAGCACAGCCATTATATCGGATGCCCTCAATGCAATGTACTCAGAAC
rJMFF019H05-          AAGGCGACTATGANAGCACAGCCATTATATCGGATGCCCTCAATGCAATGTACTCANAAC
rJMSF018M19-          ANGGCGACTATGANAGCACAGCCNTTATATCGGATGCCCTCAATGCAATGTACTCANAAC
rJMSF051M05-          ANGGNGACTATGANAGCNCAGCCNTTATATCGGANGCCCNCAANGCAANGTACNCAAAAC
                      ____________________________________________________________
consensus             AAGGCGACTATGAGAGCACAGCCATTATATCGGATGCCCTCAATGCAATGTACTCAGAAC
 
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JMFN042A18+           CATCACTGCCTTTAAACTCATTGCCAGC-ATACTTGGAATACAGTACGGTGTTTCCAGAA
rJMFF019H05-          CATCACTGCCTTTAAACTCATTGCCAGCAATACTTGGAATACAGTACGGNGTTTCCANAA
rJMSF018M19-          CATCACTGCCTTTAAACTCATTGCCAGC-ATACTTGGAATACAGTACGGNGTTTCCAGAA
rJMSF051M05-          CATCNCNGCCTTTAAACTCATTGCCAGC-ATACTTGGAATACAGTACGGGGTTTCCANAA
                      ____________________________________________________________
consensus             CATCACTGCCTTTAAACTCATTGCCAGC-ATACTTGGAATACAGTACGGTGTTTCCAGAA
 
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JMFN042A18+           CTAACTGGTAAAGGTTTCCTGTTTCCTTCTTCATCAAGAGGACCAGGTCCAACAGCTACA
rJMFF019H05-          CTAACTGGTAAAGGTTTCCTGTTTCCTTCTTCATCAANAGGACCAGGTCCAACAGCTACA
rJMSF018M19-          CTAACNGGNAAAGGTTTCCNGTTTCCTTCTTCATCAAGAGGACCAGGTCCAACAGCTACA
rJMSF051M05-          CTAACNGGNAAAGGTTTCCNGTTTCCTTCTTCATCAAGAGGACCAGGTCCAACAGCTACA
JMFN040K16+                                                     CCAGGTCCAACAGCTACA
                      ____________________________________________________________
consensus             CTAACTGGTAAAGGTTTCCTGTTTCCTTCTTCATCAAGAGGACCAGGTCCAACAGCTACA
 
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JMFN042A18+           ACCGTGCCAATGGAAGGCTTCTCCTTGGTAGCCTCAGTAAGCAGCAACCCTCCTGCAGTT
rJMFF019H05-          ACCGNGCCAATGGAAGGCTTCTCCTTGGTAGCCTCAGTAAGCAGCAACCCTCCTGCAGTT
rJMSF018M19-          ACCGNGCCAATGGAAGGCTTCNCCTTGGTAGCCTCAGTAAGCAGCAACCCTCCNGCAGTT
rJMSF051M05-          ACCGGGCCAANGGAAGGCTTCNCCTTGGTAGCCNCAGTAAGCAGCAACCCNCCNGCAGTT
JMFN040K16+           ACCGTGCCAATGGAAGGCTTCTCCTTGGTAGCCTCAGTAAGCAGCAACCCTCCTGCAGTT
                      ____________________________________________________________
consensus             ACCGTGCCAATGGAAGGCTTCTCCTTGGTAGCCTCAGTAAGCAGCAACCCTCCTGCAGTT
 
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JMFN042A18+           TTTTCTTCGGCCTCAGCAACCTTTATTAAAACCCTGTCATTGAGGGGTTTCATGTCCTTG
rJMFF019H05-          TTTTCTTCGGCCTCAGCAACCTTTATTAAAACCCTGTCATTGAGGGGTTTCATGTCCTTG
rJMSF018M19-          TTTTCTTCGGCCTCAGCAACCTTTATTAAAACCCTGTCATTGAGGGGTTTCANGTCCTTG
rJMSF051M05-          TTTTCTTCGGCCTCAGCAACCTTTATTAAAACCCNGTCATTGAGGGGTTTCANGTCCTTG
JMSF051M05+                       TCAGCAACCTTTATTAAAACCCTGTCATTGAGGGGTTTCATGTCCTTG
JMFF019H05+                                              GTCATTGAGGGGTTTCATGTCCTTG
JMFN040K16+           TTTTCTTCGGCCTCAGCAACCTTTATTAAAACCCTGTCATTGAGGGGTTTCATGTCCTTG
                      ____________________________________________________________
consensus             TTTTCTTCGGCCTCAGCAACCTTTATTAAAACCCTGTCATTGAGGGGTTTCATGTCCTTG
 
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JMFN042A18+           ACATCATCTGTTTCAAGAGTACCAACAATGTCATCCTCTTTCAAAATGAGATGATTGGTT
rJMFF019H05-          ACATCATCTGTTTCAANAGTACCAACAATGTCATCCTCTTTCAAAATGANATGATTGGTT
rJMSF018M19-          ACATCATCTGTTTCAAGAGTACCAACAANGTCATCCTCTTTCAAAATGANATGATNGGTT
rJMSF051M05-          ACATCATCNGTTTCAAGAGTACCAACAANGTCANCCNCTTTCAAAANGANATGATNGGTT
JMSF051M05+           ACATCATCTGTTTCAAGAGTACCAACAATGTCATCCTCTTTCAAAATGAGATGATTGGTT
JMFF019H05+           ACATCATCTGTTTCAAGAGTACCAACAATGTCATCCTCTTTCAAAATGAGATGATTGGTT
JMFN040K16+           ACATCATCTGTTTCAAGAGTACCAACAATGTCATCCTCTTTCAAAATGAGATGATTGGTT
                      ____________________________________________________________
consensus             ACATCATCTGTTTCAAGAGTACCAACAATGTCATCCTCTTTCAAAATGAGATGATTGGTT
 
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JMFN042A18+           CCATCGAACTCAACCTCTGTCCCAGCATATTTTGAGTATACA                  
rJMFF019H05-          CCATCGAACTCAACCTCTGTCCCAGCATATTTTGAGTATACAACCTGGGCTCCAGTCTTC
rJMSF018M19-          CCATCGAACTCAACCTCTGTCCCAGCATATTTTGAGTATACAACCNGGGCTCCAGTCTTC
rJMSF051M05-          CCATCGAACTCAACCTCNGTCCCAGCANATTTTGAGTATACAACCTGGGCTCCAGTCTTC
JMSF051M05+           CCATCGAACTCAACCTCTGTCCCAGCATATTTTGAGTATACAACCTGGGCTCCAGTCTTC
JMFF019H05+           CCATCGAACTCAACCTCTGTCCCAGCATATTTTGAGTATACAACCTGGGCTCCAGTCTTC
JMFN033A22+                                                                    TTC
JMFN040K16+           CCATCGAACTCAACCTCTGTCCCAGCATATTTTGAGTATACAACCTGGGCTCCAGTCTTC
                      ____________________________________________________________
consensus             CCATCGAACTCAACCTCTGTCCCAGCATATTTTGAGTATACAACCTGGGCTCCAGTCTTC
 
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rJMFF019H05-          ANACTGACGTCCACCTTAGTCTTTCCAATTGTTCGGCCCTCTCCCACAGCAACAACCTCA
rJMSF018M19-          AGACNGACGTCCACCTTAGTCTTTCCAATTGTTCGGCCCTCTCCCACAGCAACAACCTCA
rJMSF051M05-          ANACTGACGTCCACCTTAGTCTTTCCAATTGTTCGGCCCTCTCCCACAGCAACAACCTCA
JMSF051M05+           AGACTGACGTCCACCTTAGTCTTTCCAATTGTTCGGCCCTCTCCCACAGCAACAACCTCA
JMFF019H05+           AGACTGACGTCCACCTTAGTCTTTCCAATTGTTCGGCCCTCTCCCACAGCAACAACCTCA
JMFN033A22+           AGACTGACGTCCACCTTAGTCTTTCCAATTGTTCGGCCCTCTCCCACAGCAACAACCTCA
JMFN040K16+           AGACTGACGTCCACCTTAGTCTTTCCAATTGTTCGGCCCTCTCCCACAGCAACAACCTCA
JMSF018M19+                              TCTTTCCAATTGTTCGGCCCTCTCCCACAGCAACAACCTCA
                      ____________________________________________________________
consensus             AGACTGACGTCCACCTTAGTCTTTCCAATTGTTCGGCCCTCTCCCACAGCAACAACCTCA
 
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rJMFF019H05-          CCACCCTGGGGTTTTGATTGTGCTGTTGTTGG                            
rJMSF018M19-          CCACCCTGGGGTTTTGATTGTGCTGTTGTTGGAAGTAGTATGCCCCCAACTG        
rJMSF051M05-          CCACCCTGGGGTTTTGATTGNGCTGTTGTTGGAANTAATATGCCCCCAACTGT       
JMSF051M05+           CCACCCTGGGGTTTTGATTGTGCTGTTGTTGGAAGTAGTATGCCCCCAACTGTCTTCTCT
JMFF019H05+           CCACCCTGGGGTTTTGATTGTGCTGTTGTTGGAAGTAGTATGCCCCCAACTGTCTTCTCT
JMFN033A22+           CCACCCTGGGGTTTTGATTGTGCTGTTGTTGGAAGTAGTATGCCCCCAACTGTCTTCTCT
JMFN040K16+           CCACCCTGGGGTTTTGATTGTGCTGTTGTTGGAAGTAGTATGCCCCCAACTGTCTTCTCT
JMSF018M19+           CCACCCTGGGGTTTTGATTGTGCTGTTGTTGGAAGTAGTATGCCCCCAACTGTCTTCTCT
                      ____________________________________________________________
consensus             CCACCCTGGGGTTTTGATTGTGCTGTTGTTGGAAGTAGTATGCCCCCAACTGTCTTCTCT
 
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JMSF051M05+           TCAGAAGTCTTTATCTTCACCAACACTCTATCTGCCAGTGGCTTAAGTGTAGTGTACTTA
JMFF019H05+           TCAGAAGTCTTTATCTTCACCAACACTCTATCTGCCAGTGGCTTAAGTGTAGTGTACTTA
JMFN033A22+           TCAGAAGTCTTTATCTTCACCAACACTCTATCTGCCAGTGGCTTAAGTGTAGTGTACTTA
JMFN040K16+           TCAGAAGTCTTTATCTTCACCAACACTCTATCTGCCAGTGGCTTAAGTGTAGTGTACTTA
JMSF018M19+           TCAGAAGTCTTTATCTTCACCAACACTCTATCTGCCAGTGGCTTAAGTGTAGTGTACTTA
                      ____________________________________________________________
consensus             TCAGAAGTCTTTATCTTCACCAACACTCTATCTGCCAGTGGCTTAAGTGTAGTGTACTTA
 
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JMSF051M05+           GGGGCAACAGTAGTAGCGGCCCTGACGACGAGACCCCGGAAGGGGCTGTTTGCGCTCTGC
JMFF019H05+           GGGGCAACAGTAGTAGCGGCCCTGACGACGAGACCCCGGAAGGGGCTGTTTGCGCTCTGC
JMFN033A22+           GGGGCAACAGTAGTAGCGGCCCTGACGACGAGACCCCGGAAGGGGCTGTTTGCGCTCTGC
JMFN040K16+           GGGGCAACAGTAGTAGCGGCCCTGACGACGAGACCCCGGAAGGGGCTGTTTGCGCTCTGC
JMSF018M19+           GGGGCAACAGTAGTAGCGGCCCTGACGACGAGACCCCGGAAGGGGCTGTTTGCGCTCTGC
                      ____________________________________________________________
consensus             GGGGCAACAGTAGTAGCGGCCCTGACGACGAGACCCCGGAAGGGGCTGTTTGCGCTCTGC
 
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JMSF051M05+           CTATGAGGAGCGAAAGACGCAACCTTTACGGTGTTAGTGGACCTGAGCCCATCAAAGGAA
JMFF019H05+           CTATGAGGAGCGAAAGACGCAACCTTTACGGTGTTAGTGGACCTGAGCCCATCAAAGGAA
JMFN033A22+           CTATGAGGAGCGAAAGACGCAACCTTTACGGTGTTAGTGGACCTGAGCCCATCAAAGGAA
JMFN040K16+           CTATGAGGAGCGAAAGACGCAACCTTTACGGTGTTAGTGGACCTGAGCCCATCAAAGGAA
JMSF018M19+           CTATGAGGAGCGAAAGACGCAACCTTTACGGTGTTAGTGGACCTGAGCCCATCAAAGGAA
                      ____________________________________________________________
consensus             CTATGAGGAGCGAAAGACGCAACCTTTACGGTGTTAGTGGACCTGAGCCCATCAAAGGAA
 
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JMSF051M05+           GCAAATCCCTTGGCGGAGATGGTTGAAGCAGTGAGCTGAATTGATGCCATTCCCTG    
JMFF019H05+           GCAAATCCCTTGGCGGAGATGGTTGAAGCAGTGAGCTGAATTGATGCCATTCCCTG    
JMFN033A22+           GCAAATCCCTTGGCGGAGATGGTTGAAGCAGTGAGCTGAATTGATGCCATTCCCTG    
JMFN040K16+           GCAAATCCCTTGGCGGAGATGGTTGAAGCAGTGAGCTGAATTGATGCCATTCCCTGAGTA
JMSF018M19+           GCAAATCCCTTGGCGGAGATGGTTGAAGCAGTGAGCTGAATTGATGCCATTCCCTGAGTA
                      ____________________________________________________________
consensus             GCAAATCCCTTGGCGGAGATGGTTGAAGCAGTGAGCTGAATTGATGCCATTCCCTGAGTA
 
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JMFN040K16+           TTAGGA                                                      
JMSF018M19+           TTAGGAAGAATGCAGTGGAGAAACCGAGGAATGGAGAGTGTGGAATGAGGATAGTGTTGA
                      ____________________________________________________________
consensus             TTAGGAAGAATGCAGTGGAGAAACCGAGGAATGGAGAGTGTGGAATGAGGATAGTGTTGA
 
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JMSF018M19+           GTGATAATTGCTTGTAGGGGATAATAAAACCCTAGAAGGTTCGAGAGGGATGGGTCGACC
                      ____________________________________________________________
consensus             GTGATAATTGCTTGTAGGGGATAATAAAACCCTAGAAGGTTCGAGAGGGATGGGTCGACC